Wall clock time and date at job start Sat Apr 11 2020 06:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00008 * 2 1 4 4 H 1.48501 * 109.47340 * 240.00588 * 3 2 1 5 5 H 1.48508 * 109.46674 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47336 * 119.99720 * 3 2 1 7 7 C 1.37877 * 120.00611 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00317 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99381 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46718 * 184.71350 * 9 7 2 11 11 C 1.46897 * 110.99925 * 62.04853 * 10 9 7 12 12 C 1.52991 * 109.47574 * 66.04516 * 11 10 9 13 13 N 1.46906 * 109.47572 * 180.02562 * 12 11 10 14 14 C 1.47019 * 110.99453 * 293.63473 * 13 12 11 15 15 C 1.53100 * 109.25244 * 177.60469 * 14 13 12 16 16 O 1.43008 * 109.25997 * 56.84974 * 15 14 13 17 17 C 1.43012 * 113.73931 * 301.32741 * 16 15 14 18 18 C 1.47008 * 111.00165 * 170.00036 * 13 12 11 19 19 C 1.46900 * 110.99944 * 298.08787 * 10 9 7 20 20 C 1.50700 * 109.47135 * 288.08483 * 19 10 9 21 21 C 1.38257 * 119.99728 * 105.00212 * 20 19 10 22 22 C 1.38207 * 120.06826 * 180.02562 * 21 20 19 23 23 C 1.38258 * 120.07425 * 359.97438 * 22 21 20 24 24 C 1.38368 * 119.99836 * 359.97438 * 23 22 21 25 25 F 1.35097 * 120.03503 * 180.02562 * 24 23 22 26 26 C 1.38367 * 120.00150 * 284.72628 * 20 19 10 27 27 F 1.35102 * 120.03700 * 359.97438 * 26 20 19 28 28 H 0.96994 * 120.00637 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47268 * 64.71267 * 9 7 2 30 30 H 1.09002 * 109.47032 * 304.70839 * 9 7 2 31 31 H 1.08998 * 109.47009 * 306.04073 * 11 10 9 32 32 H 1.09003 * 109.47125 * 186.04859 * 11 10 9 33 33 H 1.08998 * 109.47314 * 59.99744 * 12 11 10 34 34 H 1.09003 * 109.47356 * 299.99790 * 12 11 10 35 35 H 1.09002 * 109.50480 * 297.53980 * 14 13 12 36 36 H 1.08997 * 109.50655 * 57.67096 * 14 13 12 37 37 H 1.09000 * 109.50809 * 296.91171 * 15 14 13 38 38 H 1.09001 * 109.53859 * 176.80420 * 15 14 13 39 39 H 1.08997 * 109.50759 * 298.73611 * 17 16 15 40 40 H 1.08998 * 109.54275 * 178.62897 * 17 16 15 41 41 H 1.09004 * 109.50546 * 302.32281 * 18 13 12 42 42 H 1.08994 * 109.51088 * 62.41508 * 18 13 12 43 43 H 1.08999 * 109.46726 * 48.08945 * 19 10 9 44 44 H 1.09000 * 109.46691 * 168.08666 * 19 10 9 45 45 H 1.08004 * 119.96596 * 0.02562 * 21 20 19 46 46 H 1.08008 * 119.96559 * 180.02562 * 22 21 20 47 47 H 1.07998 * 120.00204 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2018 -3.6133 0.1127 11 6 2.9446 -3.5450 1.3781 12 6 1.9827 -3.7671 2.5469 13 7 2.7255 -3.6981 3.8124 14 6 3.6719 -4.8171 3.9294 15 6 4.4649 -4.6737 5.2311 16 8 3.5557 -4.6161 6.3335 17 6 2.6200 -3.5376 6.2523 18 6 1.8083 -3.6694 4.9609 19 6 3.1182 -3.6420 -1.0351 20 6 2.3720 -4.0979 -2.2624 21 6 2.0187 -3.1824 -3.2364 22 6 1.3339 -3.5987 -4.3623 23 6 1.0011 -4.9316 -4.5175 24 6 1.3542 -5.8505 -3.5451 25 9 1.0298 -7.1533 -3.6962 26 6 2.0455 -5.4335 -2.4174 27 9 2.3957 -6.3297 -1.4690 28 1 -0.4851 0.8399 0.0004 29 1 0.6889 -2.5941 -0.9295 30 1 0.5630 -2.5214 0.8445 31 1 3.4113 -2.5645 1.4729 32 1 3.7146 -4.3164 1.3895 33 1 1.5160 -4.7475 2.4521 34 1 1.2128 -2.9956 2.5355 35 1 3.1228 -5.7587 3.9395 36 1 4.3575 -4.8040 3.0822 37 1 5.0558 -3.7583 5.1984 38 1 5.1278 -5.5307 5.3505 39 1 3.1572 -2.5891 6.2492 40 1 1.9480 -3.5725 7.1098 41 1 1.1335 -2.8185 4.8666 42 1 1.2289 -4.5923 4.9871 43 1 3.5200 -2.6430 -1.2041 44 1 3.9361 -4.3327 -0.8297 45 1 2.2782 -2.1407 -3.1172 46 1 1.0591 -2.8822 -5.1223 47 1 0.4656 -5.2556 -5.3976 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081157984.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:52 Heat of formation + Delta-G solvation = -94.606709 kcal Electronic energy + Delta-G solvation = -30471.743600 eV Core-core repulsion = 26097.758276 eV Total energy + Delta-G solvation = -4373.985324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.11583 -48.16917 -39.46297 -38.86613 -37.03537 -35.30122 -32.61254 -31.56298 -31.09606 -29.98070 -29.08303 -27.20542 -26.11151 -24.38413 -23.87436 -22.84016 -22.46432 -21.26677 -20.24700 -19.56995 -17.56400 -16.93770 -16.66592 -16.47194 -16.29080 -16.04524 -15.97917 -15.17854 -15.03996 -14.96957 -14.70497 -14.52660 -14.44459 -14.35346 -14.09921 -13.85332 -13.52279 -13.06819 -12.81966 -12.68453 -12.35907 -12.10475 -11.82975 -11.76884 -11.57455 -11.34721 -11.30530 -11.19009 -10.93563 -10.88093 -10.72801 -10.51252 -10.30773 -10.09516 -10.03845 -9.65130 -9.58296 -8.59045 -8.49628 -8.40166 -8.13483 -7.29526 -6.09465 -4.18608 1.25901 1.28371 3.22824 3.29123 3.31497 3.63489 3.83428 4.02183 4.09582 4.34256 4.64970 4.84624 4.93790 4.99667 5.10214 5.13158 5.18641 5.22271 5.23080 5.34663 5.37122 5.43774 5.58108 5.63321 5.72627 5.77135 5.85953 5.91683 5.94797 6.01054 6.06389 6.09807 6.18509 6.25300 6.38659 6.48048 6.51262 6.69955 6.76870 7.04922 7.10802 7.13055 7.26445 7.27836 7.45972 7.82935 7.94764 8.13785 8.20026 8.90243 9.48098 10.95453 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.008154 B = 0.004175 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3432.960493 B = 6704.651731 C = 9466.473434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.070 3.930 3 Si 0.885 3.115 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.185 3.815 10 N -0.538 5.538 11 C 0.071 3.929 12 C 0.066 3.934 13 N -0.534 5.534 14 C 0.016 3.984 15 C 0.064 3.936 16 O -0.391 6.391 17 C 0.065 3.935 18 C 0.020 3.980 19 C 0.096 3.904 20 C -0.064 4.064 21 C -0.079 4.079 22 C -0.106 4.106 23 C -0.136 4.136 24 C 0.051 3.949 25 F -0.138 7.138 26 C 0.085 3.915 27 F -0.126 7.126 28 H 0.263 0.737 29 H 0.030 0.970 30 H 0.036 0.964 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.033 0.967 34 H 0.087 0.913 35 H 0.039 0.961 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.039 0.961 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.144 0.856 46 H 0.135 0.865 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.257 -8.029 -0.124 9.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.133 4.133 3 Si 0.712 3.288 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.587 4.587 8 H 0.075 0.925 9 C 0.059 3.941 10 N -0.262 5.262 11 C -0.057 4.057 12 C -0.061 4.061 13 N -0.260 5.260 14 C -0.113 4.113 15 C -0.013 4.013 16 O -0.309 6.309 17 C -0.012 4.012 18 C -0.109 4.109 19 C -0.032 4.032 20 C -0.066 4.066 21 C -0.097 4.097 22 C -0.125 4.125 23 C -0.155 4.155 24 C 0.031 3.969 25 F -0.116 7.116 26 C 0.064 3.936 27 F -0.104 7.104 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.106 0.894 35 H 0.057 0.943 36 H 0.106 0.894 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.057 0.943 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.162 0.838 46 H 0.153 0.847 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.091 -8.131 0.082 9.594 hybrid contribution 0.197 0.840 -0.166 0.879 sum 5.288 -7.291 -0.084 9.007 Atomic orbital electron populations 1.69922 1.05975 1.26952 1.49771 1.24898 0.94664 0.98917 0.94864 0.86778 0.79760 0.83539 0.78677 1.20300 1.21290 1.20205 1.21597 0.93117 0.91886 1.52057 0.92534 1.19827 0.91012 0.85271 0.97979 1.62469 1.16841 1.47241 0.99641 1.21784 0.94801 1.00385 0.88761 1.22064 0.96314 1.00698 0.87066 1.62133 1.18479 1.42897 1.02479 1.22813 0.96727 0.92778 0.98941 1.22664 0.91392 1.02013 0.85215 1.87933 1.47087 1.51202 1.44696 1.22661 0.91388 0.90253 0.96925 1.22735 0.95210 1.01746 0.91176 1.20839 0.93437 1.00626 0.88295 1.19915 0.99115 0.90173 0.97382 1.21237 0.96110 1.00333 0.92063 1.21029 0.98340 0.94690 0.98392 1.20953 1.02561 0.93119 0.98862 1.17669 1.03479 0.79184 0.96568 1.91477 1.91093 1.33311 1.95768 1.17503 1.01474 0.87777 0.86820 1.91494 1.89858 1.66521 1.62548 0.92739 0.95239 0.94616 0.92651 0.93288 0.94909 0.89436 0.94256 0.89445 0.92352 0.88855 0.92268 0.88755 0.89416 0.94281 0.91476 0.91644 0.83798 0.84693 0.84469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.57 13.29 55.43 0.74 -23.83 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.88 20.25 29.54 -169.99 -5.02 15.23 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.55 -13.67 7.33 -34.44 -0.25 -13.92 16 8 H 0.06 1.40 5.95 -52.49 -0.31 1.09 16 9 C 0.18 4.36 4.77 -4.97 -0.02 4.34 16 10 N -0.54 -10.78 4.66 -237.52 -1.11 -11.88 16 11 C 0.07 1.31 4.70 -3.83 -0.02 1.30 16 12 C 0.07 1.17 4.88 -3.83 -0.02 1.16 16 13 N -0.53 -8.39 4.73 -234.31 -1.11 -9.50 16 14 C 0.02 0.21 5.44 -3.71 -0.02 0.19 16 15 C 0.06 0.78 7.01 37.21 0.26 1.04 16 16 O -0.39 -5.33 10.83 -35.23 -0.38 -5.71 16 17 C 0.06 0.80 7.01 37.21 0.26 1.06 16 18 C 0.02 0.28 5.65 -3.71 -0.02 0.26 16 19 C 0.10 1.73 4.63 -4.98 -0.02 1.71 16 20 C -0.06 -1.10 4.67 -104.57 -0.49 -1.59 16 21 C -0.08 -1.24 9.14 -39.59 -0.36 -1.60 16 22 C -0.11 -1.41 10.04 -39.59 -0.40 -1.81 16 23 C -0.14 -1.80 10.02 -39.53 -0.40 -2.20 16 24 C 0.05 0.80 7.31 -39.37 -0.29 0.51 16 25 F -0.14 -2.19 17.18 2.25 0.04 -2.15 16 26 C 0.08 1.46 7.25 -39.37 -0.29 1.17 16 27 F -0.13 -2.28 16.67 2.25 0.04 -2.25 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.03 0.75 7.01 -51.93 -0.36 0.39 16 30 H 0.04 0.93 6.38 -51.93 -0.33 0.60 16 31 H 0.06 1.14 6.52 -51.93 -0.34 0.80 16 32 H 0.05 0.82 6.24 -51.93 -0.32 0.50 16 33 H 0.03 0.59 8.12 -51.93 -0.42 0.17 16 34 H 0.09 1.78 6.41 -51.93 -0.33 1.45 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 1.14 6.38 -51.93 -0.33 0.81 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 1.27 6.03 -51.93 -0.31 0.96 16 44 H 0.07 1.08 7.74 -51.93 -0.40 0.68 16 45 H 0.14 2.31 8.00 -52.48 -0.42 1.89 16 46 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 47 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 379.66 15.07 5.72 5.72 Total: -1.00 -28.28 379.66 -10.08 -38.36 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.83 Total: 2.67 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -2.17 Total: -6.66 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: -1.48 Total: -45.21 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.38 Total: -5.71 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.08 Total: -4.40 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.28 -10.08 -38.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081157984.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.246 kcal (2) G-P(sol) polarization free energy of solvation -28.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds