Wall clock time and date at job start Sat Apr 11 2020 06:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00008 * 2 1 4 4 H 1.48501 * 109.47340 * 240.00588 * 3 2 1 5 5 H 1.48508 * 109.46674 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47336 * 119.99720 * 3 2 1 7 7 C 1.37877 * 120.00611 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00317 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99381 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46718 * 184.71350 * 9 7 2 11 11 C 1.46897 * 110.99925 * 62.04853 * 10 9 7 12 12 C 1.52991 * 109.47574 * 66.04516 * 11 10 9 13 13 N 1.46906 * 109.47572 * 180.02562 * 12 11 10 14 14 C 1.47019 * 110.99453 * 293.63473 * 13 12 11 15 15 C 1.53100 * 109.25244 * 177.60469 * 14 13 12 16 16 O 1.43008 * 109.25997 * 56.84974 * 15 14 13 17 17 C 1.43012 * 113.73931 * 301.32741 * 16 15 14 18 18 C 1.47008 * 111.00165 * 170.00036 * 13 12 11 19 19 C 1.46900 * 110.99944 * 298.08787 * 10 9 7 20 20 C 1.50700 * 109.47135 * 288.08483 * 19 10 9 21 21 C 1.38257 * 119.99728 * 105.00212 * 20 19 10 22 22 C 1.38207 * 120.06826 * 180.02562 * 21 20 19 23 23 C 1.38258 * 120.07425 * 359.97438 * 22 21 20 24 24 C 1.38368 * 119.99836 * 359.97438 * 23 22 21 25 25 F 1.35097 * 120.03503 * 180.02562 * 24 23 22 26 26 C 1.38367 * 120.00150 * 284.72628 * 20 19 10 27 27 F 1.35102 * 120.03700 * 359.97438 * 26 20 19 28 28 H 0.96994 * 120.00637 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47268 * 64.71267 * 9 7 2 30 30 H 1.09002 * 109.47032 * 304.70839 * 9 7 2 31 31 H 1.08998 * 109.47009 * 306.04073 * 11 10 9 32 32 H 1.09003 * 109.47125 * 186.04859 * 11 10 9 33 33 H 1.08998 * 109.47314 * 59.99744 * 12 11 10 34 34 H 1.09003 * 109.47356 * 299.99790 * 12 11 10 35 35 H 1.09002 * 109.50480 * 297.53980 * 14 13 12 36 36 H 1.08997 * 109.50655 * 57.67096 * 14 13 12 37 37 H 1.09000 * 109.50809 * 296.91171 * 15 14 13 38 38 H 1.09001 * 109.53859 * 176.80420 * 15 14 13 39 39 H 1.08997 * 109.50759 * 298.73611 * 17 16 15 40 40 H 1.08998 * 109.54275 * 178.62897 * 17 16 15 41 41 H 1.09004 * 109.50546 * 302.32281 * 18 13 12 42 42 H 1.08994 * 109.51088 * 62.41508 * 18 13 12 43 43 H 1.08999 * 109.46726 * 48.08945 * 19 10 9 44 44 H 1.09000 * 109.46691 * 168.08666 * 19 10 9 45 45 H 1.08004 * 119.96596 * 0.02562 * 21 20 19 46 46 H 1.08008 * 119.96559 * 180.02562 * 22 21 20 47 47 H 1.07998 * 120.00204 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2018 -3.6133 0.1127 11 6 2.9446 -3.5450 1.3781 12 6 1.9827 -3.7671 2.5469 13 7 2.7255 -3.6981 3.8124 14 6 3.6719 -4.8171 3.9294 15 6 4.4649 -4.6737 5.2311 16 8 3.5557 -4.6161 6.3335 17 6 2.6200 -3.5376 6.2523 18 6 1.8083 -3.6694 4.9609 19 6 3.1182 -3.6420 -1.0351 20 6 2.3720 -4.0979 -2.2624 21 6 2.0187 -3.1824 -3.2364 22 6 1.3339 -3.5987 -4.3623 23 6 1.0011 -4.9316 -4.5175 24 6 1.3542 -5.8505 -3.5451 25 9 1.0298 -7.1533 -3.6962 26 6 2.0455 -5.4335 -2.4174 27 9 2.3957 -6.3297 -1.4690 28 1 -0.4851 0.8399 0.0004 29 1 0.6889 -2.5941 -0.9295 30 1 0.5630 -2.5214 0.8445 31 1 3.4113 -2.5645 1.4729 32 1 3.7146 -4.3164 1.3895 33 1 1.5160 -4.7475 2.4521 34 1 1.2128 -2.9956 2.5355 35 1 3.1228 -5.7587 3.9395 36 1 4.3575 -4.8040 3.0822 37 1 5.0558 -3.7583 5.1984 38 1 5.1278 -5.5307 5.3505 39 1 3.1572 -2.5891 6.2492 40 1 1.9480 -3.5725 7.1098 41 1 1.1335 -2.8185 4.8666 42 1 1.2289 -4.5923 4.9871 43 1 3.5200 -2.6430 -1.2041 44 1 3.9361 -4.3327 -0.8297 45 1 2.2782 -2.1407 -3.1172 46 1 1.0591 -2.8822 -5.1223 47 1 0.4656 -5.2556 -5.3976 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081157984.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:51 Heat of formation + Delta-G solvation = -112.239086 kcal Electronic energy + Delta-G solvation = -30472.508197 eV Core-core repulsion = 26097.758276 eV Total energy + Delta-G solvation = -4374.749921 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.39315 -49.47290 -40.62897 -40.11979 -38.49674 -36.58072 -34.55846 -32.86802 -32.16348 -31.19050 -30.48471 -28.98623 -27.35873 -26.04565 -24.97990 -24.35648 -23.69536 -22.54656 -21.45484 -21.17936 -18.88519 -18.43445 -18.10555 -17.76315 -17.68645 -17.25974 -17.11648 -16.76686 -16.44819 -16.08417 -16.00824 -15.86438 -15.73489 -15.68667 -15.38595 -15.30955 -14.88026 -14.51707 -14.22095 -14.12384 -13.86974 -13.27112 -13.21024 -13.02595 -12.94409 -12.89878 -12.72981 -12.51662 -12.41758 -12.33240 -12.28138 -12.01641 -11.84616 -11.79885 -11.53086 -11.34576 -10.66777 -10.52731 -9.82811 -9.64116 -9.40252 -9.02017 -8.09210 -6.26121 0.03511 0.08825 1.40444 1.42765 1.48880 2.41522 2.41779 2.69634 2.88363 2.95210 3.17542 3.42864 3.50023 3.69264 3.86878 3.91821 3.95458 4.02891 4.14217 4.18651 4.24660 4.27354 4.34506 4.41198 4.45867 4.55883 4.65695 4.72593 4.76194 4.81435 4.87647 4.89731 4.97395 4.97933 5.00396 5.10365 5.18530 5.27376 5.28101 5.42138 5.45611 5.79626 5.86891 5.91644 5.99489 6.10228 6.16139 6.29077 6.46853 6.91894 7.44168 8.93427 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.008154 B = 0.004175 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3432.960493 B = 6704.651731 C = 9466.473434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.022 3.978 3 Si 0.945 3.055 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.206 3.794 10 N -0.541 5.541 11 C 0.079 3.921 12 C 0.080 3.920 13 N -0.544 5.544 14 C 0.016 3.984 15 C 0.066 3.934 16 O -0.401 6.401 17 C 0.069 3.931 18 C 0.018 3.982 19 C 0.099 3.901 20 C -0.082 4.082 21 C -0.091 4.091 22 C -0.094 4.094 23 C -0.120 4.120 24 C 0.042 3.958 25 F -0.140 7.140 26 C 0.064 3.936 27 F -0.138 7.138 28 H 0.262 0.738 29 H 0.008 0.992 30 H 0.005 0.995 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.055 0.945 35 H 0.035 0.965 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.120 0.880 39 H 0.060 0.940 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.037 0.963 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.136 0.864 46 H 0.171 0.829 47 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.291 -8.145 -0.885 10.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.178 4.178 3 Si 0.771 3.229 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.076 0.924 9 C 0.079 3.921 10 N -0.264 5.264 11 C -0.050 4.050 12 C -0.048 4.048 13 N -0.270 5.270 14 C -0.112 4.112 15 C -0.011 4.011 16 O -0.320 6.320 17 C -0.008 4.008 18 C -0.111 4.111 19 C -0.028 4.028 20 C -0.083 4.083 21 C -0.110 4.110 22 C -0.111 4.111 23 C -0.139 4.139 24 C 0.022 3.978 25 F -0.119 7.119 26 C 0.043 3.957 27 F -0.116 7.116 28 H 0.071 0.929 29 H 0.026 0.974 30 H 0.023 0.977 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.138 0.862 39 H 0.078 0.922 40 H 0.136 0.864 41 H 0.099 0.901 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.098 0.902 45 H 0.154 0.846 46 H 0.188 0.812 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 6.151 -8.261 -0.678 10.322 hybrid contribution -0.134 0.820 0.034 0.831 sum 6.017 -7.441 -0.644 9.591 Atomic orbital electron populations 1.70046 1.07421 1.27595 1.51230 1.25610 0.95305 1.02086 0.94767 0.85813 0.78524 0.79676 0.78893 1.19030 1.21370 1.20246 1.21785 0.93170 0.92420 1.50788 0.92392 1.19392 0.91079 0.86185 0.95397 1.62400 1.17515 1.45397 1.01112 1.21748 0.95044 0.99862 0.88296 1.21784 0.95601 0.99070 0.88339 1.62137 1.18792 1.44182 1.01898 1.22893 0.96330 0.91692 1.00311 1.22784 0.91103 1.03366 0.83827 1.87925 1.47374 1.51552 1.45159 1.22726 0.91401 0.90057 0.96598 1.22803 0.95333 1.01377 0.91540 1.20827 0.93539 1.00423 0.88045 1.19864 1.00319 0.90636 0.97521 1.21326 0.96911 0.99766 0.92985 1.21403 0.96390 0.95461 0.97888 1.21363 1.01123 0.92408 0.99002 1.17900 1.03596 0.79553 0.96768 1.91469 1.91100 1.33590 1.95758 1.17692 1.02790 0.87682 0.87487 1.91451 1.90171 1.66842 1.63173 0.92859 0.97398 0.97663 0.94757 0.91063 0.95455 0.92685 0.94628 0.88944 0.92110 0.86228 0.92208 0.86356 0.90062 0.94485 0.92555 0.90202 0.84590 0.81190 0.80792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.23 13.29 21.45 0.28 -51.94 16 2 C 0.02 1.17 5.46 84.66 0.46 1.63 16 3 Si 0.94 41.70 29.54 68.60 2.03 43.73 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 7 C -0.54 -27.67 7.33 25.60 0.19 -27.48 16 8 H 0.06 2.90 5.95 -2.92 -0.02 2.89 16 9 C 0.21 10.13 4.77 85.56 0.41 10.54 16 10 N -0.54 -22.29 4.66 -905.38 -4.22 -26.51 16 11 C 0.08 2.97 4.70 86.30 0.41 3.38 16 12 C 0.08 2.96 4.88 86.30 0.42 3.39 16 13 N -0.54 -17.21 4.73 -895.21 -4.23 -21.44 16 14 C 0.02 0.41 5.44 86.31 0.47 0.88 16 15 C 0.07 1.47 7.01 72.02 0.50 1.98 16 16 O -0.40 -10.23 10.83 -148.98 -1.61 -11.84 16 17 C 0.07 1.62 7.01 72.02 0.50 2.12 16 18 C 0.02 0.50 5.65 86.32 0.49 0.99 16 19 C 0.10 3.63 4.63 85.56 0.40 4.03 16 20 C -0.08 -2.82 4.67 -19.83 -0.09 -2.91 16 21 C -0.09 -2.82 9.14 22.27 0.20 -2.61 16 22 C -0.09 -2.25 10.04 22.27 0.22 -2.03 16 23 C -0.12 -2.84 10.02 22.31 0.22 -2.62 16 24 C 0.04 1.26 7.31 22.41 0.16 1.42 16 25 F -0.14 -4.30 17.18 44.97 0.77 -3.52 16 26 C 0.06 2.19 7.25 22.41 0.16 2.36 16 27 F -0.14 -5.05 16.67 44.97 0.75 -4.30 16 28 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 29 H 0.01 0.42 7.01 -2.39 -0.02 0.41 16 30 H 0.01 0.29 6.38 -2.39 -0.02 0.28 16 31 H 0.03 1.44 6.52 -2.39 -0.02 1.43 16 32 H 0.07 2.36 6.24 -2.39 -0.01 2.35 16 33 H 0.03 1.02 8.12 -2.39 -0.02 1.00 16 34 H 0.05 2.39 6.41 -2.39 -0.02 2.37 16 35 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 2.30 6.38 -2.39 -0.02 2.29 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.08 2.35 8.09 -2.38 -0.02 2.33 16 42 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.06 2.17 6.03 -2.39 -0.01 2.15 16 44 H 0.08 2.64 7.74 -2.39 -0.02 2.62 16 45 H 0.14 4.38 8.00 -2.91 -0.02 4.35 16 46 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 47 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -62.08 379.66 -0.11 -62.19 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.98 Total: 18.58 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 5.13 Total: -4.95 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -8.16 Total: -99.89 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -1.61 Total: -11.84 kcal Atomic # 9 Polarization: -9.34 SS G_CDS: 1.52 Total: -7.82 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -62.08 -0.11 -62.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081157984.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.048 kcal (2) G-P(sol) polarization free energy of solvation -62.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds