Wall clock time and date at job start Sat Apr 11 2020 06:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86788 * 119.99726 * 2 1 4 4 H 1.48501 * 109.47083 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47755 * 299.99666 * 3 2 1 6 6 H 1.48500 * 109.47396 * 60.00257 * 3 2 1 7 7 C 1.37870 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00029 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00538 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47401 * 175.13160 * 9 7 2 11 11 C 1.46900 * 111.00225 * 287.92664 * 10 9 7 12 12 C 1.52997 * 109.47350 * 159.38136 * 11 10 9 13 13 N 1.46903 * 109.47021 * 184.12420 * 12 11 10 14 14 C 1.47011 * 111.00183 * 293.63701 * 13 12 11 15 15 C 1.53102 * 109.25851 * 177.61037 * 14 13 12 16 16 O 1.43012 * 109.25827 * 56.84267 * 15 14 13 17 17 C 1.43008 * 113.74220 * 301.32921 * 16 15 14 18 18 C 1.47013 * 110.99941 * 169.99569 * 13 12 11 19 19 C 1.46902 * 111.00268 * 163.97027 * 10 9 7 20 20 C 1.50704 * 109.47133 * 293.95533 * 19 10 9 21 21 C 1.38228 * 119.98491 * 104.99452 * 20 19 10 22 22 C 1.38186 * 120.04786 * 180.25081 * 21 20 19 23 23 C 1.38498 * 120.02539 * 359.45933 * 22 21 20 24 24 F 1.35096 * 120.01935 * 180.27792 * 23 22 21 25 25 C 1.38405 * 119.96976 * 0.53892 * 23 22 21 26 26 C 1.38428 * 119.95238 * 359.73263 * 25 23 22 27 27 F 1.35104 * 120.01511 * 179.97438 * 26 25 23 28 28 H 0.96996 * 120.00519 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46834 * 55.12699 * 9 7 2 30 30 H 1.08999 * 109.46782 * 295.13337 * 9 7 2 31 31 H 1.09001 * 109.47061 * 279.38282 * 11 10 9 32 32 H 1.08998 * 109.47354 * 39.37555 * 11 10 9 33 33 H 1.08999 * 109.47114 * 304.11768 * 12 11 10 34 34 H 1.08995 * 109.47582 * 64.12726 * 12 11 10 35 35 H 1.09004 * 109.50166 * 297.53742 * 14 13 12 36 36 H 1.08995 * 109.51080 * 57.66989 * 14 13 12 37 37 H 1.09002 * 109.50349 * 296.90811 * 15 14 13 38 38 H 1.09001 * 109.53854 * 176.80011 * 15 14 13 39 39 H 1.09003 * 109.50935 * 298.73734 * 17 16 15 40 40 H 1.08997 * 109.54383 * 178.62721 * 17 16 15 41 41 H 1.09005 * 109.50990 * 302.32812 * 18 13 12 42 42 H 1.09005 * 109.50375 * 62.41692 * 18 13 12 43 43 H 1.09000 * 109.47471 * 173.95543 * 19 10 9 44 44 H 1.09000 * 109.47054 * 53.95158 * 19 10 9 45 45 H 1.07991 * 119.97656 * 359.97438 * 21 20 19 46 46 H 1.07994 * 119.99189 * 179.70035 * 22 21 20 47 47 H 1.08009 * 120.02176 * 179.74913 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2013 -3.6132 -0.1164 11 6 2.7669 -3.6829 -1.4703 12 6 4.0775 -4.4715 -1.4356 13 7 4.6930 -4.4573 -2.7694 14 6 3.8715 -5.1993 -3.7368 15 6 4.5172 -5.1088 -5.1220 16 8 5.8554 -5.6085 -5.0522 17 6 6.6836 -4.9081 -4.1201 18 6 6.0599 -4.9966 -2.7247 19 6 1.5691 -4.8859 0.2562 20 6 1.2212 -4.8637 1.7223 21 6 -0.0928 -4.6980 2.1181 22 6 -0.4125 -4.6723 3.4623 23 6 0.5819 -4.8238 4.4142 24 9 0.2684 -4.8043 5.7281 25 6 1.8979 -4.9898 4.0189 26 6 2.2178 -5.0098 2.6723 27 9 3.5020 -5.1712 2.2850 28 1 -0.4851 0.8400 -0.0004 29 1 0.5608 -2.5202 -0.8429 30 1 0.6910 -2.5954 0.9307 31 1 2.0604 -4.1814 -2.1340 32 1 2.9593 -2.6743 -1.8361 33 1 4.7576 -4.0145 -0.7169 34 1 3.8746 -5.5008 -1.1402 35 1 3.8065 -6.2442 -3.4331 36 1 2.8715 -4.7671 -3.7723 37 1 4.5334 -4.0690 -5.4487 38 1 3.9428 -5.7044 -5.8316 39 1 6.7629 -3.8625 -4.4177 40 1 7.6761 -5.3583 -4.1044 41 1 6.6574 -4.4163 -2.0215 42 1 6.0299 -6.0380 -2.4041 43 1 2.2594 -5.7060 0.0589 44 1 0.6612 -5.0260 -0.3305 45 1 -0.8694 -4.5841 1.3765 46 1 -1.4388 -4.5380 3.7705 47 1 2.6747 -5.1040 4.7607 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084863941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:56 Heat of formation + Delta-G solvation = -114.200050 kcal Electronic energy + Delta-G solvation = -30237.898025 eV Core-core repulsion = 25863.063070 eV Total energy + Delta-G solvation = -4374.834954 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.99786 -49.87537 -40.62226 -40.11273 -38.35885 -36.55255 -34.69817 -32.66841 -32.13326 -31.70319 -30.76347 -28.91275 -27.21364 -25.88911 -24.99876 -24.17929 -23.67336 -22.76795 -21.52131 -21.19241 -19.16090 -18.58993 -18.10496 -17.64199 -17.15500 -17.09923 -16.95300 -16.69991 -16.43684 -16.40301 -16.15421 -15.98958 -15.87255 -15.53670 -15.45187 -15.22761 -14.87189 -14.71002 -14.29535 -14.13492 -13.91573 -13.61891 -13.26980 -13.12644 -12.89436 -12.88069 -12.70646 -12.54286 -12.38629 -12.34970 -12.32967 -12.11788 -11.85180 -11.68828 -11.44713 -11.26702 -10.67390 -10.56129 -10.01311 -9.59072 -9.37649 -9.00265 -8.16803 -6.23721 -0.03360 0.06801 1.39174 1.41321 1.53400 2.31904 2.42952 2.67897 2.91770 2.95976 3.16397 3.43595 3.49406 3.64939 3.68826 3.89784 3.93398 4.00262 4.04039 4.14190 4.18353 4.21136 4.34356 4.44403 4.46313 4.48787 4.60973 4.65576 4.73976 4.82696 4.82869 4.86723 4.88277 4.97729 4.99682 5.03545 5.04797 5.08387 5.26674 5.31394 5.35981 5.70574 5.80404 5.96242 6.00274 6.12077 6.17498 6.35076 6.62175 6.91457 7.44750 8.93257 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.007939 B = 0.003926 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3526.250309 B = 7131.006428 C = 9589.867365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.211 3.789 10 N -0.537 5.537 11 C 0.078 3.922 12 C 0.082 3.918 13 N -0.550 5.550 14 C 0.016 3.984 15 C 0.065 3.935 16 O -0.402 6.402 17 C 0.065 3.935 18 C 0.020 3.980 19 C 0.096 3.904 20 C -0.122 4.122 21 C -0.056 4.056 22 C -0.159 4.159 23 C 0.116 3.884 24 F -0.135 7.135 25 C -0.197 4.197 26 C 0.137 3.863 27 F -0.132 7.132 28 H 0.262 0.738 29 H -0.032 1.032 30 H 0.019 0.981 31 H 0.028 0.972 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.035 0.965 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.117 0.883 39 H 0.058 0.942 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.041 0.959 43 H 0.088 0.912 44 H 0.046 0.954 45 H 0.149 0.851 46 H 0.163 0.837 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.381 -13.974 -1.366 15.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.190 4.190 3 Si 0.781 3.219 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.085 3.915 10 N -0.261 5.261 11 C -0.050 4.050 12 C -0.047 4.047 13 N -0.276 5.276 14 C -0.112 4.112 15 C -0.012 4.012 16 O -0.321 6.321 17 C -0.012 4.012 18 C -0.108 4.108 19 C -0.032 4.032 20 C -0.124 4.124 21 C -0.075 4.075 22 C -0.178 4.178 23 C 0.097 3.903 24 F -0.114 7.114 25 C -0.216 4.216 26 C 0.117 3.883 27 F -0.110 7.110 28 H 0.071 0.929 29 H -0.014 1.014 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.135 0.865 39 H 0.076 0.924 40 H 0.137 0.863 41 H 0.109 0.891 42 H 0.059 0.941 43 H 0.106 0.894 44 H 0.064 0.936 45 H 0.167 0.833 46 H 0.180 0.820 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.769 -13.446 -1.286 14.688 hybrid contribution -0.543 0.452 0.264 0.754 sum 5.226 -12.994 -1.022 14.042 Atomic orbital electron populations 1.70047 1.07246 1.27495 1.52212 1.25697 0.95624 1.02412 0.95224 0.85546 0.79060 0.79697 0.77632 1.19306 1.20465 1.20639 1.21425 0.93303 0.91286 1.49192 0.92813 1.19403 0.89652 0.88030 0.94426 1.61933 1.35893 1.02670 1.25649 1.21795 0.94487 1.00291 0.88458 1.21849 0.95679 0.97898 0.89231 1.62096 1.02954 1.54599 1.07920 1.22849 0.98192 0.96476 0.93653 1.22749 0.82670 1.00196 0.95539 1.87929 1.22764 1.59313 1.62059 1.22780 0.94412 0.97528 0.86498 1.22816 0.89865 0.98686 0.99464 1.20979 0.98461 0.93245 0.90505 1.20032 0.93370 1.02913 0.96043 1.20996 0.95365 0.95060 0.96077 1.21371 1.00761 1.03547 0.92082 1.17334 0.92997 1.01972 0.78042 1.91500 1.93519 1.93920 1.32453 1.21107 0.97119 1.07890 0.95492 1.17170 0.78680 1.00459 0.91969 1.91487 1.35242 1.92540 1.91763 0.92867 1.01416 0.96299 0.95351 0.91957 0.91173 0.94723 0.94079 0.89751 0.92481 0.86525 0.92394 0.86263 0.89101 0.94107 0.89401 0.93584 0.83315 0.81956 0.82126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.27 13.29 21.44 0.28 -53.98 16 2 C 0.01 0.48 5.46 84.65 0.46 0.94 16 3 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.51 -28.51 8.30 25.60 0.21 -28.30 16 8 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 9 C 0.21 10.55 4.59 85.56 0.39 10.94 16 10 N -0.54 -21.78 4.37 -905.37 -3.95 -25.73 16 11 C 0.08 2.88 4.66 86.30 0.40 3.28 16 12 C 0.08 2.52 5.02 86.30 0.43 2.95 16 13 N -0.55 -15.17 4.73 -895.20 -4.23 -19.40 16 14 C 0.02 0.40 5.44 86.32 0.47 0.87 16 15 C 0.07 1.39 7.01 72.02 0.50 1.89 16 16 O -0.40 -9.40 10.83 -148.98 -1.61 -11.01 16 17 C 0.06 1.30 7.01 72.02 0.50 1.81 16 18 C 0.02 0.45 5.65 86.32 0.49 0.94 16 19 C 0.10 3.16 4.60 85.56 0.39 3.56 16 20 C -0.12 -3.96 4.48 -19.81 -0.09 -4.04 16 21 C -0.06 -1.65 8.66 22.25 0.19 -1.46 16 22 C -0.16 -4.22 10.03 22.32 0.22 -4.00 16 23 C 0.12 3.21 7.30 22.37 0.16 3.37 16 24 F -0.14 -3.63 17.27 44.97 0.78 -2.85 16 25 C -0.20 -5.56 10.01 22.35 0.22 -5.34 16 26 C 0.14 4.39 7.24 22.37 0.16 4.55 16 27 F -0.13 -4.39 16.75 44.97 0.75 -3.64 16 28 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 29 H -0.03 -1.74 8.05 -2.39 -0.02 -1.76 16 30 H 0.02 1.00 6.13 -2.39 -0.01 0.98 16 31 H 0.03 0.99 6.56 -2.39 -0.02 0.97 16 32 H 0.06 2.72 7.12 -2.39 -0.02 2.70 16 33 H 0.07 2.37 8.04 -2.39 -0.02 2.35 16 34 H 0.03 1.01 6.94 -2.39 -0.02 0.99 16 35 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.08 2.11 6.47 -2.39 -0.02 2.09 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.09 1.97 8.09 -2.38 -0.02 1.95 16 42 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.09 2.61 6.69 -2.39 -0.02 2.59 16 44 H 0.05 1.45 7.93 -2.39 -0.02 1.44 16 45 H 0.15 4.00 8.00 -2.92 -0.02 3.98 16 46 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 47 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -63.71 384.63 0.15 -63.56 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.97 Total: 14.65 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 5.14 Total: -8.03 kcal Atomic # 7 Polarization: -91.22 SS G_CDS: -7.90 Total: -99.12 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -1.61 Total: -11.01 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 1.53 Total: -6.49 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -63.71 0.15 -63.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084863941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.641 kcal (2) G-P(sol) polarization free energy of solvation -63.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds