Wall clock time and date at job start Sat Apr 11 2020 06:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99665 * 2 1 4 4 H 1.48497 * 109.46927 * 239.99217 * 3 2 1 5 5 H 1.48500 * 109.47287 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47123 * 119.99444 * 3 2 1 7 7 C 1.37879 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99843 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00226 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47524 * 175.03926 * 9 7 2 11 11 C 1.46901 * 110.99816 * 74.51794 * 10 9 7 12 12 C 1.53004 * 109.46834 * 199.39337 * 11 10 9 13 13 N 1.46901 * 109.46926 * 174.37273 * 12 11 10 14 14 C 1.47021 * 110.99670 * 46.31889 * 13 12 11 15 15 C 1.53100 * 109.25496 * 182.34866 * 14 13 12 16 16 O 1.43010 * 109.29525 * 303.22236 * 15 14 13 17 17 C 1.43012 * 113.73949 * 58.64507 * 16 15 14 18 18 C 1.47009 * 111.00323 * 170.00162 * 13 12 11 19 19 C 1.46892 * 111.00462 * 198.47963 * 10 9 7 20 20 C 1.50702 * 109.47484 * 66.04014 * 19 10 9 21 21 C 1.38419 * 120.02788 * 269.73201 * 20 19 10 22 22 F 1.35104 * 120.00751 * 359.97223 * 21 20 19 23 23 C 1.38474 * 119.97217 * 179.69867 * 21 20 19 24 24 C 1.38201 * 120.02535 * 0.59079 * 23 21 20 25 25 C 1.38213 * 120.05126 * 359.68699 * 24 23 21 26 26 C 1.38419 * 120.02024 * 90.00077 * 20 19 10 27 27 F 1.35094 * 120.01602 * 359.97438 * 26 20 19 28 28 H 0.97001 * 120.00721 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46731 * 55.03587 * 9 7 2 30 30 H 1.09004 * 109.47194 * 295.03990 * 9 7 2 31 31 H 1.09004 * 109.46578 * 79.40114 * 11 10 9 32 32 H 1.08997 * 109.47319 * 319.39472 * 11 10 9 33 33 H 1.08993 * 109.46990 * 54.37712 * 12 11 10 34 34 H 1.09001 * 109.47409 * 294.36787 * 12 11 10 35 35 H 1.08997 * 109.47204 * 62.44139 * 14 13 12 36 36 H 1.09003 * 109.54916 * 302.30694 * 14 13 12 37 37 H 1.09003 * 109.51114 * 183.25879 * 15 14 13 38 38 H 1.09007 * 109.50659 * 63.17780 * 15 14 13 39 39 H 1.09004 * 109.50944 * 61.26878 * 17 16 15 40 40 H 1.09010 * 109.50883 * 181.35083 * 17 16 15 41 41 H 1.08996 * 109.50541 * 57.67057 * 18 13 12 42 42 H 1.09007 * 109.50250 * 297.54381 * 18 13 12 43 43 H 1.08997 * 109.47722 * 186.04588 * 19 10 9 44 44 H 1.09005 * 109.46893 * 306.03971 * 19 10 9 45 45 H 1.08003 * 119.98202 * 180.31972 * 23 21 20 46 46 H 1.08002 * 119.97572 * 179.69817 * 24 23 21 47 47 H 1.08002 * 119.98619 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2012 -3.6131 -0.1186 11 6 2.9181 -3.8310 1.1450 12 6 4.1956 -4.6287 0.8755 13 7 4.9793 -4.7310 2.1138 14 6 4.1240 -5.1068 3.2491 15 6 4.9677 -5.1446 4.5261 16 8 6.0583 -6.0518 4.3452 17 6 6.9120 -5.7145 3.2484 18 6 6.0883 -5.6835 1.9584 19 6 1.5222 -4.8397 -0.5571 20 6 1.0084 -4.6548 -1.9617 21 6 -0.2656 -4.1568 -2.1733 22 9 -1.0494 -3.8366 -1.1205 23 6 -0.7342 -3.9815 -3.4645 24 6 0.0650 -4.3152 -4.5415 25 6 1.3352 -4.8180 -4.3313 26 6 1.8082 -4.9883 -3.0411 27 9 3.0500 -5.4791 -2.8360 28 1 -0.4851 0.8400 -0.0004 29 1 0.5598 -2.5195 -0.8419 30 1 0.6924 -2.5962 0.9314 31 1 2.2809 -4.3870 1.8329 32 1 3.1769 -2.8687 1.5865 33 1 4.7863 -4.1218 0.1126 34 1 3.9335 -5.6280 0.5279 35 1 3.6925 -6.0913 3.0687 36 1 3.3252 -4.3738 3.3622 37 1 4.3508 -5.4788 5.3602 38 1 5.3547 -4.1475 4.7363 39 1 7.3556 -4.7338 3.4207 40 1 7.7017 -6.4605 3.1590 41 1 6.7227 -5.3711 1.1289 42 1 5.6888 -6.6776 1.7576 43 1 2.2252 -5.6723 -0.5339 44 1 0.6868 -5.0509 0.1105 45 1 -1.7263 -3.5881 -3.6299 46 1 -0.3031 -4.1827 -5.5482 47 1 1.9587 -5.0787 -5.1737 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154750494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:12 Heat of formation + Delta-G solvation = -89.007916 kcal Electronic energy + Delta-G solvation = -30774.969750 eV Core-core repulsion = 26401.227209 eV Total energy + Delta-G solvation = -4373.742542 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.67714 -48.57703 -39.58861 -38.70723 -37.08619 -35.36965 -32.65915 -31.63049 -31.13731 -30.02588 -29.30823 -27.29705 -26.20161 -24.36006 -24.03095 -22.64027 -22.06797 -21.60467 -20.38834 -19.64547 -17.81219 -17.09765 -16.61805 -16.38414 -16.09065 -15.90757 -15.65881 -15.24172 -15.09888 -15.02713 -14.95583 -14.90071 -14.67314 -14.19200 -14.02809 -13.91511 -13.62918 -13.05948 -12.65036 -12.49654 -12.43662 -12.18007 -12.05821 -11.90258 -11.69648 -11.47023 -11.41446 -11.23039 -10.88679 -10.85572 -10.71666 -10.65355 -10.37923 -10.34819 -9.83847 -9.62901 -9.22680 -8.61331 -8.46502 -8.38813 -8.24031 -7.35063 -5.98733 -3.99993 1.24666 1.25560 3.35624 3.39095 3.42769 3.57313 3.75345 3.91824 4.23645 4.45472 4.70377 4.76762 4.84459 4.90332 4.95606 5.01505 5.05890 5.12738 5.19604 5.25996 5.36006 5.37755 5.47937 5.52935 5.58701 5.67685 5.73371 5.76913 5.80829 5.87564 5.96514 6.00641 6.08055 6.18130 6.21494 6.32325 6.35595 6.42973 6.54880 7.02363 7.03062 7.12020 7.15313 7.20604 7.31717 7.80669 8.06271 8.15592 8.51329 9.06615 9.63318 11.11316 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.008170 B = 0.004311 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3426.420877 B = 6493.072458 C = 8714.986020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.188 3.812 10 N -0.527 5.527 11 C 0.064 3.936 12 C 0.063 3.937 13 N -0.534 5.534 14 C 0.012 3.988 15 C 0.064 3.936 16 O -0.390 6.390 17 C 0.064 3.936 18 C 0.019 3.981 19 C 0.092 3.908 20 C -0.136 4.136 21 C 0.149 3.851 22 F -0.120 7.120 23 C -0.167 4.167 24 C -0.069 4.069 25 C -0.174 4.174 26 C 0.145 3.855 27 F -0.130 7.130 28 H 0.261 0.739 29 H 0.043 0.957 30 H -0.011 1.011 31 H 0.022 0.978 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.026 0.974 35 H 0.038 0.962 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.039 0.961 43 H 0.075 0.925 44 H 0.039 0.961 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.754 -13.170 -2.284 14.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.064 3.936 10 N -0.252 5.252 11 C -0.065 4.065 12 C -0.064 4.064 13 N -0.260 5.260 14 C -0.116 4.116 15 C -0.013 4.013 16 O -0.309 6.309 17 C -0.013 4.013 18 C -0.109 4.109 19 C -0.036 4.036 20 C -0.138 4.138 21 C 0.129 3.871 22 F -0.098 7.098 23 C -0.186 4.186 24 C -0.087 4.087 25 C -0.193 4.193 26 C 0.125 3.875 27 F -0.109 7.109 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.006 0.994 31 H 0.040 0.960 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.057 0.943 45 H 0.156 0.844 46 H 0.155 0.845 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.185 -12.615 -2.353 13.841 hybrid contribution -0.568 0.280 0.354 0.725 sum 4.617 -12.335 -1.999 13.322 Atomic orbital electron populations 1.69960 1.05946 1.26724 1.50928 1.24952 0.94820 0.99109 0.95533 0.86609 0.79476 0.82939 0.78680 1.20246 1.21421 1.20257 1.21093 0.93460 0.89790 1.49978 0.91963 1.19925 0.90257 0.87054 0.96387 1.62126 1.30026 1.03696 1.29322 1.22073 0.92793 1.00813 0.90784 1.22181 0.95132 0.98436 0.90663 1.62235 1.11066 1.47718 1.04962 1.22878 0.96690 1.00320 0.91733 1.22694 0.88014 0.93970 0.96662 1.87942 1.40325 1.52167 1.50444 1.22647 0.92203 1.01161 0.85250 1.22751 0.94530 0.94617 0.99029 1.20849 0.97356 0.95049 0.90315 1.19804 0.93399 1.03787 0.96808 1.17220 0.88541 0.97117 0.84216 1.91574 1.73080 1.89652 1.55528 1.21149 1.02249 1.04416 0.90806 1.20716 0.92718 0.96446 0.98809 1.21073 0.97798 1.05052 0.95338 1.17090 0.80065 0.97583 0.92811 1.91484 1.38710 1.84841 1.95834 0.92973 0.93903 0.99355 0.96033 0.88697 0.89529 0.95544 0.94367 0.88712 0.88671 0.92134 0.92247 0.88773 0.89635 0.94296 0.90669 0.94254 0.84353 0.84452 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.88 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.50 -14.18 8.49 -34.44 -0.29 -14.48 16 8 H 0.06 1.75 7.70 -52.49 -0.40 1.35 16 9 C 0.19 4.87 4.23 -4.98 -0.02 4.85 16 10 N -0.53 -11.27 4.36 -237.52 -1.03 -12.30 16 11 C 0.06 1.21 3.84 -3.82 -0.01 1.19 16 12 C 0.06 1.03 5.30 -3.82 -0.02 1.01 16 13 N -0.53 -7.79 4.87 -234.31 -1.14 -8.93 16 14 C 0.01 0.16 4.95 -3.71 -0.02 0.14 16 15 C 0.06 0.76 7.01 37.21 0.26 1.03 16 16 O -0.39 -5.08 10.83 -35.23 -0.38 -5.46 16 17 C 0.06 0.72 7.01 37.20 0.26 0.98 16 18 C 0.02 0.24 5.63 -3.72 -0.02 0.21 16 19 C 0.09 1.72 4.62 -4.98 -0.02 1.69 16 20 C -0.14 -2.45 4.95 -104.49 -0.52 -2.97 16 21 C 0.15 2.71 5.92 -39.43 -0.23 2.47 16 22 F -0.12 -2.46 14.85 2.25 0.03 -2.43 16 23 C -0.17 -2.48 10.02 -39.51 -0.40 -2.88 16 24 C -0.07 -0.85 10.04 -39.60 -0.40 -1.25 16 25 C -0.17 -2.32 10.03 -39.50 -0.40 -2.71 16 26 C 0.14 2.35 7.24 -39.43 -0.29 2.06 16 27 F -0.13 -2.13 16.48 2.25 0.04 -2.10 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.04 1.17 4.44 -51.93 -0.23 0.94 16 30 H -0.01 -0.32 8.02 -51.93 -0.42 -0.73 16 31 H 0.02 0.39 6.52 -51.93 -0.34 0.05 16 32 H 0.09 2.03 7.16 -51.93 -0.37 1.66 16 33 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.03 0.42 6.90 -51.93 -0.36 0.06 16 35 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 1.34 6.18 -51.93 -0.32 1.02 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 1.26 6.21 -51.93 -0.32 0.94 16 44 H 0.04 0.74 7.61 -51.93 -0.40 0.35 16 45 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 46 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 47 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 378.60 15.07 5.71 5.71 Total: -1.00 -31.48 378.60 -10.22 -41.70 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.94 Total: -0.09 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -2.21 Total: -7.12 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -1.44 Total: -47.07 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.38 Total: -5.46 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.07 Total: -4.52 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.48 -10.22 -41.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154750494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.303 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds