Wall clock time and date at job start Sat Apr 11 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99576 * 2 1 4 4 H 1.48502 * 109.46994 * 269.99917 * 3 2 1 5 5 H 1.48495 * 109.47299 * 30.00326 * 3 2 1 6 6 H 1.48503 * 109.46524 * 150.00369 * 3 2 1 7 7 C 1.37872 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99988 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00076 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47281 * 184.39515 * 9 7 2 11 11 C 1.46899 * 111.00158 * 195.99039 * 10 9 7 12 12 C 1.53001 * 109.47170 * 66.04708 * 11 10 9 13 13 N 1.46900 * 109.47543 * 180.02562 * 12 11 10 14 14 C 1.47012 * 111.00017 * 293.63676 * 13 12 11 15 15 C 1.53091 * 109.25827 * 177.60588 * 14 13 12 16 16 O 1.43011 * 109.26182 * 56.84821 * 15 14 13 17 17 C 1.43022 * 113.73807 * 301.33167 * 16 15 14 18 18 C 1.47008 * 111.00055 * 169.99798 * 13 12 11 19 19 C 1.46906 * 111.00033 * 72.03747 * 10 9 7 20 20 C 1.50695 * 109.47179 * 200.31898 * 19 10 9 21 21 C 1.38207 * 120.00179 * 254.14625 * 20 19 10 22 22 C 1.38425 * 119.99903 * 179.77090 * 21 20 19 23 23 F 1.35107 * 120.00194 * 180.26944 * 22 21 20 24 24 C 1.38467 * 120.00151 * 0.52878 * 22 21 20 25 25 C 1.38165 * 119.99919 * 359.72142 * 24 22 21 26 26 C 1.38431 * 119.99754 * 74.42050 * 20 19 10 27 27 F 1.35100 * 120.00176 * 359.97438 * 26 20 19 28 28 H 0.97002 * 120.00247 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47064 * 64.39330 * 9 7 2 30 30 H 1.09003 * 109.47244 * 304.39936 * 9 7 2 31 31 H 1.08998 * 109.47244 * 306.04942 * 11 10 9 32 32 H 1.08996 * 109.47245 * 186.04885 * 11 10 9 33 33 H 1.09000 * 109.47336 * 59.99818 * 12 11 10 34 34 H 1.09003 * 109.46900 * 299.99945 * 12 11 10 35 35 H 1.09001 * 109.50441 * 297.54256 * 14 13 12 36 36 H 1.09001 * 109.50678 * 57.66630 * 14 13 12 37 37 H 1.09002 * 109.50984 * 296.91203 * 15 14 13 38 38 H 1.09006 * 109.54084 * 176.80556 * 15 14 13 39 39 H 1.09001 * 109.50087 * 298.73185 * 17 16 15 40 40 H 1.08994 * 109.54166 * 178.62229 * 17 16 15 41 41 H 1.08993 * 109.51204 * 302.32722 * 18 13 12 42 42 H 1.09001 * 109.50771 * 62.41609 * 18 13 12 43 43 H 1.08994 * 109.47102 * 320.32189 * 19 10 9 44 44 H 1.09007 * 109.46753 * 80.31946 * 19 10 9 45 45 H 1.08003 * 119.99591 * 0.02562 * 21 20 19 46 46 H 1.08003 * 120.00726 * 179.70564 * 24 22 21 47 47 H 1.08007 * 120.00180 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5749 -0.1078 11 6 5.4198 -2.6606 0.2640 12 6 5.5784 -2.3319 1.7498 13 7 6.9971 -2.4171 2.1216 14 6 7.4857 -3.8000 2.0220 15 6 8.9786 -3.8336 2.3592 16 8 9.1804 -3.2806 3.6625 17 6 8.7165 -1.9342 3.7949 18 6 7.2209 -1.8814 3.4722 19 6 3.7774 -3.1101 -1.4574 20 6 3.8121 -4.6160 -1.4128 21 6 4.9069 -5.2971 -1.9105 22 6 4.9407 -6.6801 -1.8652 23 9 6.0133 -7.3458 -2.3468 24 6 3.8731 -7.3817 -1.3312 25 6 2.7764 -6.7011 -0.8383 26 6 2.7449 -5.3173 -0.8784 27 9 1.6726 -4.6517 -0.3965 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.7501 0.9256 30 1 3.8746 -0.6132 -0.8491 31 1 5.9944 -1.9490 -0.3288 32 1 5.7848 -3.6700 0.0742 33 1 5.0038 -3.0435 2.3428 34 1 5.2134 -1.3225 1.9396 35 1 6.9397 -4.4304 2.7239 36 1 7.3333 -4.1677 1.0072 37 1 9.5309 -3.2465 1.6253 38 1 9.3332 -4.8642 2.3421 39 1 9.2611 -1.2920 3.1027 40 1 8.8809 -1.5907 4.8161 41 1 6.8753 -0.8487 3.5161 42 1 6.6701 -2.4806 4.1972 43 1 2.8051 -2.7797 -1.8227 44 1 4.5588 -2.7482 -2.1259 45 1 5.7377 -4.7499 -2.3311 46 1 3.8974 -8.4610 -1.3001 47 1 1.9434 -7.2483 -0.4221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176265088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:25 Heat of formation + Delta-G solvation = -90.230266 kcal Electronic energy + Delta-G solvation = -30582.198097 eV Core-core repulsion = 26208.402551 eV Total energy + Delta-G solvation = -4373.795547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.90842 -48.37561 -39.65833 -38.96163 -37.17900 -35.46859 -32.65209 -31.85093 -31.30043 -30.07113 -29.52528 -27.75447 -26.39917 -24.37986 -24.04541 -22.86893 -22.09715 -21.53846 -20.42320 -19.76686 -17.43752 -17.12371 -17.04594 -16.75238 -16.55410 -16.21503 -15.77398 -15.33856 -15.16690 -15.09488 -14.91533 -14.68704 -14.51965 -14.25853 -14.06104 -13.81214 -13.58834 -13.43256 -13.11674 -12.82822 -12.51578 -12.35734 -12.31667 -12.02248 -11.82952 -11.63746 -11.52780 -11.48355 -11.08062 -10.91498 -10.82036 -10.66887 -10.54668 -10.03097 -9.88215 -9.75549 -9.35699 -9.04690 -8.59072 -8.37879 -8.33496 -7.54947 -6.06114 -4.03523 1.08010 1.08391 3.24877 3.33478 3.34413 3.42680 3.65152 3.81254 4.17708 4.39176 4.43661 4.58704 4.75181 4.81381 4.85166 4.93811 4.96090 5.04473 5.06045 5.19210 5.23864 5.25627 5.36664 5.44781 5.50347 5.53845 5.67690 5.71983 5.74051 5.78535 5.86935 5.92105 6.00791 6.01591 6.15086 6.19785 6.23090 6.30541 6.37650 6.73631 6.81082 6.92793 6.94296 7.01005 7.04459 7.56489 7.76881 7.90321 8.62774 9.08868 9.55494 11.06809 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.006224 B = 0.005417 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4497.460864 B = 5167.773130 C = 8916.626301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.870 3.130 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.510 4.510 8 H 0.088 0.912 9 C 0.162 3.838 10 N -0.520 5.520 11 C 0.058 3.942 12 C 0.059 3.941 13 N -0.538 5.538 14 C 0.016 3.984 15 C 0.065 3.935 16 O -0.389 6.389 17 C 0.065 3.935 18 C 0.018 3.982 19 C 0.098 3.902 20 C -0.074 4.074 21 C -0.126 4.126 22 C 0.076 3.924 23 F -0.142 7.142 24 C -0.132 4.132 25 C -0.135 4.135 26 C 0.125 3.875 27 F -0.111 7.111 28 H 0.263 0.737 29 H 0.032 0.968 30 H -0.013 1.013 31 H 0.033 0.967 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.058 0.942 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.107 0.893 44 H 0.040 0.960 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.534 -10.890 0.593 18.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.698 3.302 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.548 4.548 8 H 0.106 0.894 9 C 0.036 3.964 10 N -0.244 5.244 11 C -0.070 4.070 12 C -0.068 4.068 13 N -0.264 5.264 14 C -0.113 4.113 15 C -0.013 4.013 16 O -0.307 6.307 17 C -0.012 4.012 18 C -0.110 4.110 19 C -0.030 4.030 20 C -0.076 4.076 21 C -0.145 4.145 22 C 0.057 3.943 23 F -0.121 7.121 24 C -0.151 4.151 25 C -0.154 4.154 26 C 0.104 3.896 27 F -0.089 7.089 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.005 0.995 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.125 0.875 44 H 0.058 0.942 45 H 0.156 0.844 46 H 0.157 0.843 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 14.447 -10.833 0.755 18.073 hybrid contribution 0.162 1.091 -0.224 1.126 sum 14.609 -9.742 0.531 17.567 Atomic orbital electron populations 1.69895 1.06075 1.26718 1.50945 1.24886 0.94668 0.98605 0.94984 0.86948 0.80337 0.84456 0.78476 1.20376 1.21215 1.19322 1.21106 0.88564 0.95030 1.50148 0.89385 1.20274 0.97329 0.83302 0.95493 1.61847 1.14456 1.24359 1.23756 1.22020 0.90034 1.00087 0.94903 1.22149 0.85769 1.02549 0.96350 1.62177 1.19554 1.19479 1.25150 1.22814 0.96192 0.89942 1.02317 1.22664 0.94710 0.99094 0.84783 1.87958 1.82437 1.28563 1.31759 1.22658 0.92959 0.83761 1.01816 1.22756 0.97240 1.01328 0.89719 1.20943 1.03589 0.87600 0.90890 1.19997 0.92408 0.97576 0.97609 1.20920 0.99222 0.92115 1.02245 1.17574 0.85404 0.90131 1.01188 1.91484 1.53735 1.80752 1.86137 1.20861 0.92789 1.00671 1.00770 1.21021 0.99650 0.92547 1.02221 1.17580 0.85374 0.89527 0.97082 1.91654 1.52023 1.80425 1.84766 0.92706 0.95013 0.99540 0.94869 0.91861 0.93698 0.89896 0.93952 0.89486 0.92392 0.88676 0.92355 0.88614 0.89535 0.93886 0.87459 0.94193 0.84408 0.84337 0.83994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 20.94 27.38 -169.99 -4.65 16.29 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.19 6.67 56.52 0.38 -5.81 16 7 C -0.51 -13.87 8.85 -34.44 -0.30 -14.18 16 8 H 0.09 2.64 7.60 -52.48 -0.40 2.24 16 9 C 0.16 3.69 3.66 -4.98 -0.02 3.67 16 10 N -0.52 -10.06 4.37 -237.52 -1.04 -11.10 16 11 C 0.06 0.94 4.71 -3.82 -0.02 0.93 16 12 C 0.06 0.94 4.92 -3.82 -0.02 0.92 16 13 N -0.54 -7.28 4.73 -234.32 -1.11 -8.39 16 14 C 0.02 0.19 5.44 -3.72 -0.02 0.17 16 15 C 0.06 0.69 7.01 37.20 0.26 0.95 16 16 O -0.39 -4.75 10.83 -35.23 -0.38 -5.13 16 17 C 0.07 0.69 7.01 37.21 0.26 0.95 16 18 C 0.02 0.22 5.64 -3.71 -0.02 0.20 16 19 C 0.10 1.72 4.64 -4.97 -0.02 1.70 16 20 C -0.07 -1.14 4.83 -104.56 -0.51 -1.65 16 21 C -0.13 -1.63 9.04 -39.52 -0.36 -1.98 16 22 C 0.08 0.94 7.30 -39.43 -0.29 0.65 16 23 F -0.14 -1.75 17.27 2.25 0.04 -1.71 16 24 C -0.13 -1.48 10.02 -39.52 -0.40 -1.88 16 25 C -0.14 -1.70 10.02 -39.52 -0.40 -2.10 16 26 C 0.12 1.99 7.24 -39.42 -0.29 1.70 16 27 F -0.11 -2.17 16.31 2.25 0.04 -2.13 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 29 H 0.03 0.74 5.30 -51.93 -0.28 0.46 16 30 H -0.01 -0.30 7.24 -51.93 -0.38 -0.68 16 31 H 0.03 0.55 8.12 -51.93 -0.42 0.12 16 32 H 0.06 0.94 5.34 -51.93 -0.28 0.66 16 33 H 0.04 0.76 8.12 -51.93 -0.42 0.34 16 34 H 0.08 1.44 6.18 -51.93 -0.32 1.12 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 1.01 6.38 -51.93 -0.33 0.68 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 42 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.11 2.19 7.06 -51.93 -0.37 1.82 16 44 H 0.04 0.63 7.79 -51.92 -0.40 0.23 16 45 H 0.14 1.56 8.00 -52.48 -0.42 1.14 16 46 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 47 H 0.14 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 380.03 15.07 5.73 5.73 Total: -1.00 -30.37 380.03 -9.81 -40.18 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.98 Total: 0.51 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -2.23 Total: -8.08 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: -1.37 Total: -45.65 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.38 Total: -5.13 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.08 Total: -3.84 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.65 Total: 16.29 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.37 -9.81 -40.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176265088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.055 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds