Wall clock time and date at job start Sat Apr 11 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34221 * 117.00010 * 2 1 4 4 O 1.20825 * 120.00128 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00194 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47446 * 180.02562 * 5 3 2 7 7 C 1.37096 * 120.00089 * 269.99992 * 6 5 3 8 8 H 1.08004 * 120.00342 * 197.50960 * 7 6 5 9 9 C 1.38951 * 119.99876 * 17.50889 * 7 6 5 10 10 N 1.31410 * 120.00155 * 14.80761 * 9 7 6 11 11 Si 1.86798 * 120.00006 * 194.81128 * 9 7 6 12 12 H 1.48506 * 109.47270 * 89.99869 * 11 9 7 13 13 H 1.48503 * 109.47346 * 209.99648 * 11 9 7 14 14 H 1.48496 * 109.47288 * 329.99946 * 11 9 7 15 15 C 1.34777 * 120.00411 * 89.99634 * 6 5 3 16 16 O 1.21298 * 119.99459 * 4.55242 * 15 6 5 17 17 C 1.50696 * 120.00462 * 184.54821 * 15 6 5 18 18 H 1.09000 * 109.67220 * 322.69536 * 17 15 6 19 19 C 1.53070 * 109.66930 * 83.19117 * 17 15 6 20 20 C 1.50180 * 109.88906 * 168.67112 * 19 17 15 21 21 O 1.21288 * 118.24434 * 162.44230 * 20 19 17 22 22 N 1.33352 * 123.51028 * 342.41519 * 20 19 17 23 23 C 1.45752 * 124.10433 * 2.22730 * 22 20 19 24 24 H 1.08998 * 109.30178 * 101.03047 * 23 22 20 25 25 C 1.53000 * 109.29960 * 220.61226 * 23 22 20 26 26 C 1.52997 * 109.47042 * 296.75653 * 25 23 22 27 27 C 1.52998 * 109.47345 * 174.96387 * 26 25 23 28 28 C 1.53003 * 109.47338 * 294.96653 * 26 25 23 29 29 C 1.52920 * 110.48744 * 340.92046 * 23 22 20 30 30 H 1.08994 * 109.47156 * 300.00072 * 1 2 3 31 31 H 1.09009 * 109.46750 * 60.00229 * 1 2 3 32 32 H 1.09004 * 109.46795 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47537 * 59.99921 * 5 3 2 34 34 H 1.09008 * 109.47072 * 299.99881 * 5 3 2 35 35 H 0.96999 * 120.00250 * 185.00761 * 10 9 7 36 36 H 1.08999 * 109.40356 * 48.54497 * 19 17 15 37 37 H 1.09002 * 109.40306 * 288.79590 * 19 17 15 38 38 H 0.96998 * 117.94806 * 182.19642 * 22 20 19 39 39 H 1.09003 * 109.47113 * 56.75455 * 25 23 22 40 40 H 1.08998 * 109.47042 * 176.75995 * 25 23 22 41 41 H 1.09002 * 109.47129 * 54.96653 * 26 25 23 42 42 H 1.09006 * 109.46811 * 64.56693 * 27 26 25 43 43 H 1.09004 * 109.47412 * 184.56108 * 27 26 25 44 44 H 1.08991 * 109.47587 * 304.56985 * 27 26 25 45 45 H 1.09007 * 109.46630 * 60.00066 * 28 26 25 46 46 H 1.08994 * 109.47011 * 179.97438 * 28 26 25 47 47 H 1.08993 * 109.47121 * 300.00190 * 28 26 25 48 48 H 1.08999 * 109.60585 * 170.50903 * 29 23 22 49 49 H 1.09002 * 109.60342 * 290.99942 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.1756 3.3378 -1.1868 8 1 4.7411 4.2578 -1.2081 9 6 3.6446 2.8213 -2.3624 10 7 2.7266 1.8824 -2.3118 11 14 4.2357 3.4616 -4.0146 12 1 5.3928 2.6519 -4.4741 13 1 3.1357 3.3604 -5.0071 14 1 4.6487 4.8812 -3.8764 15 6 4.1732 3.3253 1.1676 16 8 4.0824 2.7221 2.2161 17 6 4.5003 4.7963 1.1705 18 1 5.1550 5.0283 0.3305 19 6 3.2095 5.6113 1.0582 20 6 3.4938 7.0595 1.3364 21 8 2.6772 7.8832 0.9817 22 7 4.5958 7.4882 1.9530 23 6 5.6788 6.6166 2.3908 24 1 6.4989 6.6736 1.6750 25 6 6.1735 7.0754 3.7640 26 6 6.7560 8.4857 3.6512 27 6 7.1354 8.9937 5.0436 28 6 8.0015 8.4536 2.7631 29 6 5.1958 5.1688 2.4854 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.9558 0.7809 -0.8908 34 1 3.9564 0.7805 0.8892 35 1 2.4085 1.4705 -3.1304 36 1 2.4827 5.2398 1.7806 37 1 2.8030 5.5090 0.0520 38 1 4.6821 8.4397 2.1203 39 1 5.3404 7.0816 4.4669 40 1 6.9441 6.3915 4.1197 41 1 6.0133 9.1514 3.2115 42 1 7.9359 8.3755 5.4502 43 1 7.4745 10.0272 4.9734 44 1 6.2664 8.9401 5.6993 45 1 7.7310 8.0917 1.7711 46 1 8.4161 9.4584 2.6824 47 1 8.7441 7.7879 3.2027 48 1 6.0479 4.5088 2.6481 49 1 4.4918 5.0715 3.3119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349129711.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:36 Heat of formation + Delta-G solvation = -183.382500 kcal Electronic energy + Delta-G solvation = -31689.702466 eV Core-core repulsion = 27422.955051 eV Total energy + Delta-G solvation = -4266.747415 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.86618 -41.11111 -40.04099 -38.57336 -37.32490 -36.45025 -36.14334 -33.97403 -33.43385 -31.40251 -30.28774 -27.99150 -27.95973 -27.70089 -26.79752 -24.89971 -23.35147 -22.07180 -21.21672 -20.73581 -20.17045 -18.87230 -18.42180 -18.19464 -18.09259 -17.31839 -17.06544 -16.90880 -16.52023 -16.19491 -16.01017 -15.85495 -15.49160 -15.16309 -14.72709 -14.63694 -14.55927 -14.26418 -14.13497 -13.90971 -13.54582 -13.28483 -13.07023 -13.03699 -12.95351 -12.83699 -12.75169 -12.60479 -12.52294 -12.46143 -12.16480 -12.02932 -11.79327 -11.61964 -11.51731 -11.49692 -11.43665 -11.34789 -11.13323 -10.91444 -10.30515 -10.06356 -9.87998 -8.36361 -5.96585 1.40467 1.48746 1.52867 1.58461 1.69390 1.89207 2.20248 2.28223 2.38539 2.80246 3.11952 3.56281 3.67356 3.73225 3.87736 4.04492 4.08044 4.12365 4.26983 4.34235 4.37376 4.38600 4.43022 4.45212 4.54690 4.63775 4.72567 4.73142 4.78512 4.82855 4.85256 4.90189 4.97226 5.04588 5.11587 5.14934 5.19300 5.29286 5.39464 5.44512 5.52767 5.56317 5.65376 5.78310 5.85210 6.26697 6.30969 7.07107 7.15759 7.32047 7.47028 7.85257 8.69388 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013210 B = 0.003531 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.154379 B = 7927.829867 C = 8746.494746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.379 6.379 3 C 0.491 3.509 4 O -0.539 6.539 5 C 0.156 3.844 6 N -0.437 5.437 7 C -0.341 4.341 8 H 0.117 0.883 9 C -0.002 4.002 10 N -0.897 5.897 11 Si 0.991 3.009 12 H -0.264 1.264 13 H -0.296 1.296 14 H -0.262 1.262 15 C 0.466 3.534 16 O -0.623 6.623 17 C -0.082 4.082 18 H 0.106 0.894 19 C -0.108 4.108 20 C 0.533 3.467 21 O -0.603 6.603 22 N -0.696 5.696 23 C 0.142 3.858 24 H 0.099 0.901 25 C -0.120 4.120 26 C -0.098 4.098 27 C -0.145 4.145 28 C -0.152 4.152 29 C -0.103 4.103 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.132 0.868 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.270 0.730 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.404 0.596 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.063 0.937 48 H 0.097 0.903 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.098 5.640 7.724 13.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.296 6.296 3 C 0.334 3.666 4 O -0.427 6.427 5 C 0.030 3.970 6 N -0.154 5.154 7 C -0.468 4.468 8 H 0.134 0.866 9 C -0.203 4.203 10 N -0.537 5.537 11 Si 0.815 3.185 12 H -0.189 1.189 13 H -0.222 1.222 14 H -0.186 1.186 15 C 0.257 3.743 16 O -0.511 6.511 17 C -0.103 4.103 18 H 0.124 0.876 19 C -0.149 4.149 20 C 0.321 3.679 21 O -0.485 6.485 22 N -0.348 5.348 23 C 0.038 3.962 24 H 0.116 0.884 25 C -0.158 4.158 26 C -0.117 4.117 27 C -0.202 4.202 28 C -0.209 4.209 29 C -0.142 4.142 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.150 0.850 33 H 0.135 0.865 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.242 0.758 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.116 0.884 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.258 5.733 7.859 13.430 hybrid contribution -0.768 0.273 -1.140 1.401 sum 8.490 6.006 6.720 12.382 Atomic orbital electron populations 1.23229 0.76508 1.04587 1.00966 1.86409 1.23807 1.34081 1.85261 1.23887 0.92501 0.80722 0.69474 1.90476 1.67281 1.37594 1.47354 1.20456 0.87171 0.85784 1.03566 1.43610 1.57277 1.08532 1.06021 1.20032 1.32739 1.10453 0.83610 0.86590 1.26001 0.93853 0.97355 1.03068 1.69693 1.26035 1.28285 1.29685 0.84941 0.77494 0.79172 0.76891 1.18933 1.22208 1.18649 1.20638 0.81254 0.89711 0.82731 1.90515 1.59039 1.69297 1.32213 1.21103 0.97131 0.90787 1.01301 0.87631 1.21268 0.98613 0.90835 1.04155 1.19971 0.81123 0.90594 0.76229 1.90702 1.47397 1.55839 1.54577 1.45569 1.18893 1.12103 1.58282 1.21280 0.88506 0.88333 0.98077 0.88367 1.22019 1.01540 0.97650 0.94549 1.21128 0.97789 0.95666 0.97085 1.21811 1.01576 1.01247 0.95609 1.21929 0.97215 1.02242 0.99495 1.21742 1.01473 0.95532 0.95416 0.93286 0.93914 0.85008 0.86517 0.89146 0.91920 0.90102 0.89576 0.75777 0.91510 0.88603 0.91765 0.91994 0.92265 0.92934 0.92602 0.92326 0.91770 0.88410 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.40 10.56 113.37 1.20 2.60 16 2 O -0.38 -16.23 10.57 -51.33 -0.54 -16.77 16 3 C 0.49 24.33 5.81 71.23 0.41 24.74 16 4 O -0.54 -30.20 15.53 21.97 0.34 -29.86 16 5 C 0.16 7.33 5.29 85.63 0.45 7.78 16 6 N -0.44 -20.85 2.11 -639.59 -1.35 -22.20 16 7 C -0.34 -16.14 8.91 84.04 0.75 -15.39 16 8 H 0.12 5.06 5.94 -2.91 -0.02 5.04 16 9 C 0.00 -0.07 5.06 84.93 0.43 0.36 16 10 N -0.90 -45.65 8.33 21.66 0.18 -45.47 16 11 Si 0.99 38.65 29.58 68.60 2.03 40.68 16 12 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 13 H -0.30 -12.06 7.11 99.48 0.71 -11.36 16 14 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 15 C 0.47 21.01 6.75 87.66 0.59 21.60 16 16 O -0.62 -30.46 15.78 -3.08 -0.05 -30.51 16 17 C -0.08 -2.95 1.88 -11.40 -0.02 -2.97 16 18 H 0.11 3.58 6.26 -2.39 -0.01 3.56 16 19 C -0.11 -4.24 5.30 29.71 0.16 -4.09 16 20 C 0.53 18.88 7.71 87.72 0.68 19.56 16 21 O -0.60 -25.84 17.78 -3.06 -0.05 -25.89 16 22 N -0.70 -17.79 5.12 -446.64 -2.29 -20.08 16 23 C 0.14 2.94 2.93 45.11 0.13 3.08 16 24 H 0.10 1.77 6.39 -2.39 -0.02 1.75 16 25 C -0.12 -1.88 4.34 30.59 0.13 -1.74 16 26 C -0.10 -1.31 2.84 -10.79 -0.03 -1.34 16 27 C -0.15 -1.73 9.19 71.98 0.66 -1.07 16 28 C -0.15 -1.87 8.95 71.98 0.64 -1.22 16 29 C -0.10 -2.86 3.98 30.68 0.12 -2.74 16 30 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 31 H 0.04 1.57 8.13 -2.38 -0.02 1.55 16 32 H 0.13 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.12 5.45 6.65 -2.39 -0.02 5.43 16 34 H 0.09 4.01 7.36 -2.38 -0.02 3.99 16 35 H 0.27 13.32 8.32 -92.71 -0.77 12.55 16 36 H 0.08 3.42 8.09 -2.39 -0.02 3.40 16 37 H 0.09 3.87 7.93 -2.39 -0.02 3.85 16 38 H 0.40 9.02 6.86 -92.71 -0.64 8.39 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.06 0.91 6.43 -2.39 -0.02 0.90 16 42 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.05 0.74 6.49 -2.38 -0.02 0.72 16 46 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 49 H 0.07 2.01 8.08 -2.39 -0.02 2.00 16 Total: -1.00 -69.30 389.96 4.91 -64.39 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: 0.33 Total: 36.56 kcal Atomic # 6 Polarization: 42.84 SS G_CDS: 6.31 Total: 49.15 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -3.46 Total: -87.74 kcal Atomic # 8 Polarization: -102.73 SS G_CDS: -0.30 Total: -103.04 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -69.30 4.91 -64.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349129711.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.992 kcal (2) G-P(sol) polarization free energy of solvation -69.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds