Wall clock time and date at job start Sat Apr 11 2020 06:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 5 5 C 1.36939 * 119.99933 * 85.27615 * 4 2 1 6 6 H 1.08001 * 119.99700 * 359.72658 * 5 4 2 7 7 C 1.38810 * 120.00095 * 179.71972 * 5 4 2 8 8 N 1.31612 * 120.00054 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99751 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47517 * 89.99708 * 9 7 5 11 11 H 1.48502 * 109.46736 * 209.99481 * 9 7 5 12 12 H 1.48496 * 109.47375 * 329.99177 * 9 7 5 13 13 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 14 14 H 1.09005 * 110.88719 * 60.70330 * 13 2 1 15 15 C 1.55161 * 111.00639 * 296.82167 * 13 2 1 16 16 C 1.54320 * 102.94244 * 206.42577 * 15 13 2 17 17 N 1.47019 * 107.27253 * 22.18982 * 16 15 13 18 18 C 1.34784 * 125.64549 * 181.09541 * 17 16 15 19 19 O 1.21550 * 119.99532 * 179.97438 * 18 17 16 20 20 C 1.47888 * 120.00100 * 359.97438 * 18 17 16 21 21 N 1.32136 * 120.03828 * 359.97438 * 20 18 17 22 22 C 1.31974 * 122.77251 * 179.97438 * 21 20 18 23 23 C 1.37776 * 121.73098 * 0.02562 * 22 21 20 24 24 C 1.40389 * 118.72619 * 359.97438 * 23 22 21 25 25 C 1.40647 * 122.28577 * 179.97438 * 24 23 22 26 26 C 1.36635 * 117.95444 * 179.97438 * 25 24 23 27 27 C 1.39398 * 119.92876 * 0.02562 * 26 25 24 28 28 N 1.31214 * 121.85216 * 359.97438 * 27 26 25 29 29 C 1.33260 * 121.21674 * 359.77059 * 28 27 26 30 30 C 1.47460 * 108.72348 * 1.03013 * 17 16 15 31 31 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 32 32 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 33 33 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 34 34 H 0.97001 * 119.99790 * 264.99588 * 4 2 1 35 35 H 0.96998 * 120.00381 * 180.02562 * 8 7 5 36 36 H 1.09000 * 110.71909 * 324.78931 * 15 13 2 37 37 H 1.08995 * 110.71728 * 87.88234 * 15 13 2 38 38 H 1.09003 * 109.88595 * 141.61343 * 16 15 13 39 39 H 1.09006 * 109.87941 * 262.62304 * 16 15 13 40 40 H 1.08001 * 119.13728 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.63935 * 179.97438 * 23 22 21 42 42 H 1.07999 * 121.01921 * 0.02562 * 25 24 23 43 43 H 1.08005 * 120.04105 * 179.97438 * 26 25 24 44 44 H 1.07992 * 119.07932 * 179.97438 * 27 26 25 45 45 H 1.09006 * 110.40751 * 217.08310 * 30 17 16 46 46 H 1.09000 * 110.35276 * 94.74144 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1545 -0.0062 -2.3743 6 1 1.8977 1.0417 -2.4228 7 6 2.6228 -0.6591 -3.5062 8 7 2.7532 -0.0014 -4.6387 9 14 3.0665 -2.4717 -3.4224 10 1 1.8709 -3.2897 -3.7486 11 1 4.1467 -2.7625 -4.3990 12 1 3.5349 -2.8039 -2.0529 13 6 2.0399 -0.7212 1.2493 14 1 1.6996 -1.7566 1.2665 15 6 1.6091 0.0272 2.5384 16 6 2.7008 -0.3744 3.5525 17 7 3.8814 -0.7902 2.7812 18 6 5.0429 -1.2343 3.3012 19 8 5.9560 -1.5525 2.5648 20 6 5.2062 -1.3343 4.7676 21 7 4.2142 -0.9880 5.5688 22 6 4.3010 -1.0561 6.8839 23 6 5.4448 -1.4971 7.5127 24 6 6.5416 -1.8826 6.7257 25 6 7.7453 -2.3435 7.2887 26 6 8.7559 -2.6960 6.4395 27 6 8.5743 -2.5922 5.0613 28 7 7.4491 -2.1615 4.5416 29 6 6.4228 -1.8066 5.3140 30 6 3.5842 -0.6426 1.3444 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6318 -1.1525 35 1 3.0801 -0.4577 -5.4298 36 1 1.6104 1.1052 2.3771 37 1 0.6274 -0.3104 2.8704 38 1 2.9518 0.4778 4.1841 39 1 2.3479 -1.2013 4.1689 40 1 3.4535 -0.7575 7.4830 41 1 5.4968 -1.5453 8.5904 42 1 7.8666 -2.4172 8.3593 43 1 9.6948 -3.0539 6.8355 44 1 9.3824 -2.8742 4.4027 45 1 4.0409 -1.4532 0.7766 46 1 3.9379 0.3224 0.9813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733529549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:38 Heat of formation + Delta-G solvation = 66.670635 kcal Electronic energy + Delta-G solvation = -29014.028834 eV Core-core repulsion = 25097.726207 eV Total energy + Delta-G solvation = -3916.302627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.65940 -39.76523 -38.33437 -37.63062 -35.23907 -34.07981 -32.47513 -31.86440 -31.07927 -30.43355 -28.79884 -28.33883 -25.87277 -24.50279 -24.23960 -23.56849 -22.55998 -21.24418 -20.00961 -19.76274 -18.88946 -17.89646 -17.66597 -17.29810 -16.56311 -16.02209 -15.60142 -15.15557 -15.01107 -14.77141 -14.65002 -14.13188 -13.97378 -13.75283 -13.53108 -13.43263 -13.10333 -12.87206 -12.67221 -12.60212 -12.48103 -12.22477 -12.05011 -11.68485 -11.54451 -11.17856 -10.94037 -10.76298 -10.53127 -10.48121 -10.29007 -10.14475 -10.06625 -9.85665 -9.75236 -9.50960 -9.36457 -8.86928 -8.85944 -8.36751 -7.20495 -5.70035 -3.05229 -0.43546 0.28364 1.28654 2.40250 2.91835 3.05691 3.45520 3.50073 3.53500 3.76116 3.79975 3.86827 4.01716 4.17744 4.29787 4.38817 4.66847 4.69074 4.70759 4.86827 4.95167 4.97453 5.08012 5.14167 5.19653 5.45157 5.45491 5.58780 5.60544 5.64496 5.69914 5.84781 5.88981 5.95425 5.99977 6.14624 6.16207 6.19594 6.29071 6.36844 6.43962 6.48770 6.61210 6.84708 7.05506 7.26259 7.54551 7.67601 8.05899 8.29726 8.49074 9.27670 10.00583 10.20008 11.48423 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.002826 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.986492 B = 9906.563184 C =11368.996707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.190 3.810 3 H 0.058 0.942 4 N -0.749 5.749 5 C -0.240 4.240 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.935 5.935 9 Si 0.881 3.119 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.275 1.275 13 C -0.106 4.106 14 H 0.079 0.921 15 C -0.128 4.128 16 C 0.118 3.882 17 N -0.601 5.601 18 C 0.571 3.429 19 O -0.494 6.494 20 C 0.151 3.849 21 N -0.438 5.438 22 C 0.072 3.928 23 C -0.125 4.125 24 C -0.085 4.085 25 C -0.065 4.065 26 C -0.155 4.155 27 C 0.132 3.868 28 N -0.420 5.420 29 C 0.106 3.894 30 C 0.119 3.881 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.167 0.833 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.166 0.834 45 H 0.080 0.920 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.078 -3.818 32.184 32.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.080 3.920 3 H 0.076 0.924 4 N -0.392 5.392 5 C -0.369 4.369 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.583 5.583 9 Si 0.712 3.288 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.201 1.201 13 C -0.126 4.126 14 H 0.098 0.902 15 C -0.167 4.167 16 C -0.005 4.005 17 N -0.335 5.335 18 C 0.356 3.644 19 O -0.366 6.366 20 C -0.003 4.003 21 N -0.151 5.151 22 C -0.073 4.073 23 C -0.146 4.146 24 C -0.092 4.092 25 C -0.091 4.091 26 C -0.176 4.176 27 C -0.042 4.042 28 N -0.128 5.128 29 C -0.019 4.019 30 C -0.003 4.003 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.193 0.807 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.184 0.816 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.183 0.817 45 H 0.098 0.902 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.633 -3.412 30.409 31.114 hybrid contribution 1.191 -1.713 1.408 2.517 sum 6.825 -5.125 31.817 32.942 Atomic orbital electron populations 1.22396 0.98564 1.00878 1.00501 1.20131 0.92085 0.95454 0.84324 0.92426 1.42804 1.79708 1.09443 1.07231 1.19043 1.36693 0.95551 0.85652 0.89210 1.24643 1.01398 0.97404 0.95617 1.69694 1.52690 1.35542 1.00393 0.86588 0.78027 0.86953 0.77248 1.21245 1.21806 1.20149 1.22715 0.93895 1.00509 0.95513 0.90243 1.22763 0.98088 1.01189 0.94613 1.22071 0.84635 1.00091 0.93661 1.48424 1.13113 1.63270 1.08741 1.17211 0.82200 0.79429 0.85531 1.90900 1.39072 1.47655 1.59017 1.21509 0.88370 0.95670 0.94710 1.67659 1.29243 1.12360 1.05860 1.22649 0.97699 0.96982 0.90017 1.22380 0.92989 0.98124 1.01085 1.18975 0.96055 1.00244 0.93908 1.21417 0.91448 0.95472 1.00769 1.22148 1.00410 1.00030 0.95001 1.23381 0.95052 0.92525 0.93233 1.68349 0.98985 1.07550 1.37874 1.19479 0.94397 0.98563 0.89433 1.22328 0.95520 1.03005 0.79428 0.93997 0.92344 0.93650 0.80678 0.93135 0.90397 0.90113 0.91107 0.91049 0.81626 0.83674 0.83713 0.83843 0.81652 0.90152 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.31 37.16 0.35 -2.39 16 2 C 0.19 3.52 2.40 -67.93 -0.16 3.35 16 3 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 4 N -0.75 -17.59 4.70 -53.43 -0.25 -17.84 16 5 C -0.24 -6.75 10.41 -15.06 -0.16 -6.91 16 6 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 7 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 8 N -0.94 -29.86 13.97 55.49 0.78 -29.08 16 9 Si 0.88 22.87 27.74 -169.99 -4.71 18.16 16 10 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.29 -7.72 7.11 56.52 0.40 -7.31 16 12 H -0.28 -6.84 6.52 56.52 0.37 -6.47 16 13 C -0.11 -1.65 2.64 -88.47 -0.23 -1.88 16 14 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 15 C -0.13 -1.53 5.44 -24.90 -0.14 -1.66 16 16 C 0.12 1.46 5.40 -3.07 -0.02 1.44 16 17 N -0.60 -9.57 3.33 -171.58 -0.57 -10.14 16 18 C 0.57 9.95 7.84 -12.31 -0.10 9.85 16 19 O -0.49 -10.29 15.47 5.32 0.08 -10.21 16 20 C 0.15 2.16 6.78 -82.55 -0.56 1.60 16 21 N -0.44 -5.05 6.82 -9.55 -0.07 -5.11 16 22 C 0.07 0.57 11.12 -17.66 -0.20 0.38 16 23 C -0.12 -0.87 9.93 -38.94 -0.39 -1.25 16 24 C -0.08 -0.80 5.75 -106.79 -0.61 -1.41 16 25 C -0.06 -0.42 9.94 -39.25 -0.39 -0.81 16 26 C -0.15 -1.00 10.03 -39.73 -0.40 -1.39 16 27 C 0.13 1.27 11.14 -17.38 -0.19 1.07 16 28 N -0.42 -6.00 8.49 -10.75 -0.09 -6.10 16 29 C 0.11 1.43 6.61 -84.62 -0.56 0.87 16 30 C 0.12 2.08 6.16 -2.51 -0.02 2.06 16 31 H 0.04 0.57 7.38 -51.93 -0.38 0.18 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.36 8.50 5.66 -40.82 -0.23 8.27 16 35 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 36 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 37 H 0.08 0.82 8.11 -51.93 -0.42 0.39 16 38 H 0.07 0.82 7.55 -51.93 -0.39 0.43 16 39 H 0.07 0.83 7.42 -51.93 -0.39 0.45 16 40 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 42 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 43 H 0.14 0.42 8.06 -52.48 -0.42 0.00 16 44 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.08 1.60 8.04 -51.93 -0.42 1.19 16 46 H 0.08 1.41 8.03 -51.93 -0.42 0.99 16 LS Contribution 377.04 15.07 5.68 5.68 Total: -1.00 -37.10 377.04 -9.48 -46.58 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -6.46 Total: 5.09 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -3.87 Total: 2.97 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: -0.20 Total: -68.27 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.71 Total: 18.16 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.10 -9.48 -46.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733529549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.248 kcal (2) G-P(sol) polarization free energy of solvation -37.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds