Wall clock time and date at job start Sat Apr 11 2020 06:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99888 * 2 1 4 4 C 1.52997 * 109.46848 * 66.04509 * 3 2 1 5 5 C 1.53006 * 109.46931 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.46962 * 180.02562 * 5 4 3 7 7 C 1.46503 * 119.99942 * 89.99970 * 6 5 4 8 8 C 1.34776 * 120.00229 * 270.00436 * 6 5 4 9 9 O 1.21283 * 119.99562 * 359.97438 * 8 6 5 10 10 C 1.50698 * 120.00280 * 180.02562 * 8 6 5 11 11 S 1.80992 * 109.47106 * 179.97438 * 10 8 6 12 12 C 1.76202 * 100.00112 * 179.97438 * 11 10 8 13 13 H 1.08002 * 119.99679 * 0.02562 * 12 11 10 14 14 C 1.38797 * 120.00273 * 180.02562 * 12 11 10 15 15 N 1.31626 * 119.99800 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99974 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46802 * 89.99931 * 16 14 12 18 18 H 1.48500 * 109.47045 * 209.99801 * 16 14 12 19 19 H 1.48498 * 109.47241 * 330.00274 * 16 14 12 20 20 C 1.46902 * 111.00283 * 236.05039 * 2 1 3 21 21 C 1.50708 * 109.46760 * 293.95026 * 20 2 1 22 22 C 1.34665 * 126.58839 * 95.02591 * 21 20 2 23 23 N 1.34132 * 108.02073 * 179.97438 * 22 21 20 24 24 C 1.30501 * 109.25495 * 359.97438 * 23 22 21 25 25 N 1.35046 * 108.69974 * 359.76873 * 24 23 22 26 26 C 1.46500 * 126.39878 * 180.26633 * 25 24 23 27 27 H 1.08997 * 109.47334 * 60.00212 * 1 2 3 28 28 H 1.09000 * 109.46674 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47296 * 299.99911 * 1 2 3 30 30 H 1.08998 * 109.47121 * 186.04343 * 3 2 1 31 31 H 1.09000 * 109.47141 * 306.04541 * 3 2 1 32 32 H 1.08998 * 109.47584 * 300.00097 * 4 3 2 33 33 H 1.09005 * 109.46901 * 60.00396 * 4 3 2 34 34 H 1.08998 * 109.47207 * 299.99936 * 5 4 3 35 35 H 1.09000 * 109.46973 * 60.00084 * 5 4 3 36 36 H 1.09007 * 109.46682 * 89.99776 * 7 6 5 37 37 H 1.08997 * 109.47193 * 209.99800 * 7 6 5 38 38 H 1.08996 * 109.47063 * 330.00716 * 7 6 5 39 39 H 1.09004 * 109.47055 * 299.99737 * 10 8 6 40 40 H 1.09003 * 109.46856 * 59.99680 * 10 8 6 41 41 H 0.97006 * 119.99438 * 179.97438 * 15 14 12 42 42 H 1.08993 * 109.47196 * 53.94614 * 20 2 1 43 43 H 1.09000 * 109.47010 * 173.95423 * 20 2 1 44 44 H 1.08001 * 125.99366 * 359.95632 * 22 21 20 45 45 H 1.08002 * 125.65272 * 180.02562 * 24 23 22 46 46 H 1.09000 * 109.47294 * 270.11815 * 26 25 24 47 47 H 1.08996 * 109.46718 * 30.12220 * 26 25 24 48 48 H 1.09003 * 109.46795 * 150.11907 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3182 5 6 2.1802 3.4857 1.3185 6 7 1.8321 4.1423 2.5811 7 6 2.7405 4.0545 3.7271 8 6 0.6762 4.8270 2.6883 9 8 -0.0756 4.8999 1.7394 10 6 0.3185 5.5029 3.9868 11 16 -1.2805 6.3333 3.8142 12 6 -1.4461 7.0171 5.4296 13 1 -0.6732 6.8552 6.1664 14 6 -2.5699 7.7637 5.7554 15 7 -3.5117 7.9613 4.8573 16 14 -2.7458 8.4880 7.4683 17 1 -2.1421 9.8444 7.4965 18 1 -4.1853 8.5793 7.8216 19 1 -2.0499 7.6160 8.4483 20 6 1.9955 -0.7659 -1.1376 21 6 1.6370 -2.2204 -0.9729 22 6 0.5711 -2.8495 -1.5035 23 7 0.6146 -4.1343 -1.1207 24 6 1.6673 -4.3253 -0.3735 25 7 2.3359 -3.1574 -0.2606 26 6 3.5758 -2.9343 0.4870 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 3.0797 1.3445 -0.1082 31 1 1.5611 1.9274 -0.8309 32 1 0.5471 2.0844 1.4265 33 1 2.0658 1.5015 2.1492 34 1 3.2645 3.4583 1.2105 35 1 1.7462 4.0418 0.4876 36 1 3.4432 4.8874 3.6984 37 1 2.1644 4.0969 4.6514 38 1 3.2900 3.1142 3.6840 39 1 0.2574 4.7574 4.7797 40 1 1.0839 6.2375 4.2369 41 1 -4.2973 8.4828 5.0851 42 1 1.5611 -0.3872 -2.0628 43 1 3.0798 -0.6610 -1.1756 44 1 -0.1863 -2.3986 -2.1275 45 1 1.9582 -5.2631 0.0764 46 1 3.3362 -2.6487 1.5112 47 1 4.1659 -3.8507 0.4938 48 1 4.1480 -2.1373 0.0120 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733768647.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:51 Heat of formation + Delta-G solvation = 36.144080 kcal Electronic energy + Delta-G solvation = -26474.674299 eV Core-core repulsion = 22692.491893 eV Total energy + Delta-G solvation = -3782.182406 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.38117 -39.53680 -38.02476 -35.55704 -34.31574 -32.87197 -32.43330 -30.61936 -29.04184 -27.52402 -27.32585 -26.96727 -25.65740 -25.28470 -23.08721 -21.72118 -21.07180 -20.12638 -19.18375 -17.67816 -17.33844 -16.69372 -16.55298 -15.93870 -15.83878 -15.58396 -15.08176 -14.84342 -14.80828 -14.65102 -14.02880 -13.93602 -13.75038 -13.30017 -13.23529 -13.19341 -12.98092 -12.80783 -12.62279 -12.45781 -12.44604 -12.15463 -12.08667 -11.81075 -11.62552 -11.50518 -11.06774 -11.02785 -10.78439 -10.68453 -10.21040 -9.86956 -9.81062 -9.36768 -9.07055 -8.83107 -8.58818 -8.50179 -8.23048 -6.50535 -6.22022 -3.92627 1.68185 2.47817 2.85814 2.94535 3.05142 3.21759 3.25573 3.29866 3.58089 3.75114 4.19925 4.27749 4.33241 4.43314 4.63947 4.69199 4.73445 4.87751 4.91941 4.98816 5.02832 5.11478 5.13216 5.14572 5.19604 5.23513 5.34554 5.36895 5.40321 5.45549 5.51889 5.57549 5.62377 5.70270 5.83807 5.89774 6.00560 6.04957 6.12810 6.15216 6.42855 6.63922 6.68434 6.73347 6.89022 7.52459 7.59182 7.79305 8.34703 8.55696 9.23233 10.85384 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.019686 B = 0.001792 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.991528 B =15623.633757 C =16049.693828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.540 5.540 3 C 0.059 3.941 4 C -0.131 4.131 5 C 0.120 3.880 6 N -0.625 5.625 7 C 0.081 3.919 8 C 0.532 3.468 9 O -0.515 6.515 10 C -0.150 4.150 11 S -0.062 6.062 12 C -0.535 4.535 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.128 3.872 21 C -0.012 4.012 22 C -0.023 4.023 23 N -0.494 5.494 24 C 0.178 3.822 25 N -0.450 5.450 26 C 0.076 3.924 27 H 0.030 0.970 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.060 0.940 43 H 0.079 0.921 44 H 0.166 0.834 45 H 0.204 0.796 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.489 -20.576 -9.182 29.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.264 5.264 3 C -0.069 4.069 4 C -0.170 4.170 5 C -0.004 4.004 6 N -0.361 5.361 7 C -0.062 4.062 8 C 0.320 3.680 9 O -0.390 6.390 10 C -0.301 4.301 11 S 0.164 5.836 12 C -0.683 4.683 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.502 5.502 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.197 1.197 20 C 0.000 4.000 21 C -0.128 4.128 22 C -0.172 4.172 23 N -0.212 5.212 24 C -0.104 4.104 25 N -0.133 5.133 26 C -0.067 4.067 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.183 0.817 45 H 0.220 0.780 46 H 0.099 0.901 47 H 0.103 0.897 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 17.929 -21.181 -10.325 29.609 hybrid contribution 1.184 1.293 1.887 2.576 sum 19.114 -19.888 -8.438 28.845 Atomic orbital electron populations 1.22488 0.86473 1.02476 1.01461 1.62007 1.08991 1.13572 1.41805 1.22052 0.99668 0.87571 0.97593 1.21957 1.02723 0.95161 0.97176 1.21301 0.99391 0.92541 0.87138 1.47852 1.21271 1.53849 1.13127 1.21753 0.93825 1.01509 0.89133 1.20352 0.80037 0.77641 0.89943 1.90690 1.48871 1.59704 1.39694 1.23556 1.06718 1.02815 0.96987 1.85391 1.15018 1.64324 1.18821 1.22856 1.08934 1.38519 0.98014 0.90960 1.24994 0.94773 0.95581 0.98258 1.70020 1.08650 1.37757 1.33816 0.86170 0.77562 0.79300 0.82482 1.20274 1.20742 1.19698 1.20395 1.00110 0.86543 0.93001 1.21016 0.97119 0.92399 1.02254 1.22079 0.99132 0.90507 1.05479 1.70283 1.19097 1.17753 1.14083 1.24923 0.91692 0.91108 1.02717 1.45237 1.20837 1.09207 1.37981 1.22004 0.84033 1.03485 0.97153 0.95131 0.91053 0.90732 0.90898 0.94152 0.90936 0.91259 0.91015 0.89947 0.92773 0.90702 0.91455 0.89299 0.89319 0.92187 0.92179 0.90246 0.81690 0.77990 0.90114 0.89711 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.12 60.06 0.55 0.74 16 2 N -0.54 -4.75 4.75 -244.37 -1.16 -5.91 16 3 C 0.06 0.49 4.96 -3.82 -0.02 0.48 16 4 C -0.13 -1.36 5.46 -26.73 -0.15 -1.51 16 5 C 0.12 1.34 5.41 -4.04 -0.02 1.31 16 6 N -0.63 -8.53 2.87 -181.57 -0.52 -9.05 16 7 C 0.08 0.81 10.24 59.85 0.61 1.42 16 8 C 0.53 10.02 7.69 -10.99 -0.08 9.93 16 9 O -0.52 -11.63 15.44 5.55 0.09 -11.54 16 10 C -0.15 -3.05 4.71 36.00 0.17 -2.88 16 11 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 12 C -0.53 -15.23 9.50 30.94 0.29 -14.94 16 13 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 14 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 15 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 16 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 C 0.13 0.95 5.21 -4.97 -0.03 0.92 16 21 C -0.01 -0.11 5.69 -81.60 -0.46 -0.57 16 22 C -0.02 -0.24 10.68 -17.81 -0.19 -0.43 16 23 N -0.49 -5.69 11.25 -14.66 -0.16 -5.86 16 24 C 0.18 1.51 12.56 -90.37 -1.14 0.37 16 25 N -0.45 -3.42 3.15 -121.36 -0.38 -3.80 16 26 C 0.08 0.30 11.01 59.85 0.66 0.96 16 27 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.75 6.34 -51.93 -0.33 0.42 16 29 H 0.07 0.85 6.47 -51.93 -0.34 0.51 16 30 H 0.07 0.47 7.93 -51.93 -0.41 0.06 16 31 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 32 H 0.07 0.98 6.55 -51.93 -0.34 0.64 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 35 H 0.08 1.07 7.42 -51.93 -0.39 0.69 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.78 6.44 -51.93 -0.33 0.44 16 38 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 39 H 0.09 1.67 7.40 -51.91 -0.38 1.29 16 40 H 0.09 1.67 8.11 -51.91 -0.42 1.25 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.06 0.43 8.12 -51.93 -0.42 0.00 16 43 H 0.08 0.47 7.16 -51.93 -0.37 0.10 16 44 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.20 0.96 8.06 -52.49 -0.42 0.54 16 46 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 48 H 0.08 0.27 7.30 -51.93 -0.38 -0.11 16 LS Contribution 406.33 15.07 6.12 6.12 Total: -1.00 -36.96 406.33 -10.30 -47.26 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -7.88 Total: -2.04 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 0.10 Total: -2.20 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -1.50 Total: -50.06 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.96 -10.30 -47.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733768647.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.406 kcal (2) G-P(sol) polarization free energy of solvation -36.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds