Wall clock time and date at job start Sat Apr 11 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99960 * 2 1 4 4 C 1.53005 * 109.46869 * 270.00126 * 3 2 1 5 5 H 1.09000 * 109.47173 * 305.00062 * 4 3 2 6 6 O 1.42892 * 109.47140 * 65.00168 * 4 3 2 7 7 C 1.53004 * 109.46798 * 185.00034 * 4 3 2 8 8 N 1.46896 * 109.46938 * 179.97438 * 7 4 3 9 9 C 1.46897 * 111.00201 * 180.02562 * 8 7 4 10 10 C 1.50701 * 109.47509 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99823 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00095 * 179.97438 * 10 9 8 13 13 C 1.37092 * 119.99917 * 180.02562 * 12 10 9 14 14 H 1.08005 * 120.00267 * 0.02562 * 13 12 10 15 15 C 1.38958 * 120.00009 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99787 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99965 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47101 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47099 * 119.99959 * 17 15 13 20 20 H 1.48497 * 109.46865 * 239.99929 * 17 15 13 21 21 C 1.34775 * 119.99876 * 180.02562 * 2 1 3 22 22 O 1.21561 * 119.99768 * 183.61914 * 21 2 1 23 23 C 1.47794 * 120.00283 * 3.60940 * 21 2 1 24 24 C 1.40922 * 127.24112 * 173.39930 * 23 21 2 25 25 N 1.31133 * 105.78205 * 179.77649 * 24 23 21 26 26 N 1.28522 * 109.05316 * 0.22656 * 25 24 23 27 27 C 1.46499 * 124.43883 * 180.02562 * 26 25 24 28 28 N 1.28585 * 111.11503 * 0.02562 * 26 25 24 29 29 H 1.09006 * 109.46848 * 264.07914 * 1 2 3 30 30 H 1.09005 * 109.46904 * 24.07388 * 1 2 3 31 31 H 1.08993 * 109.47330 * 144.07817 * 1 2 3 32 32 H 1.09000 * 109.47400 * 30.00046 * 3 2 1 33 33 H 1.09003 * 109.47040 * 150.00503 * 3 2 1 34 34 H 0.96703 * 113.99965 * 59.99900 * 6 4 3 35 35 H 1.09000 * 109.47281 * 299.99962 * 7 4 3 36 36 H 1.08999 * 109.46893 * 60.00190 * 7 4 3 37 37 H 1.00902 * 111.00166 * 303.95279 * 8 7 4 38 38 H 1.08997 * 109.47011 * 300.00402 * 9 8 7 39 39 H 1.09005 * 109.47064 * 59.99996 * 9 8 7 40 40 H 0.96997 * 120.00204 * 0.02562 * 12 10 9 41 41 H 0.97005 * 119.99697 * 179.97438 * 16 15 13 42 42 H 1.08005 * 127.10784 * 0.04473 * 24 23 21 43 43 H 1.09002 * 109.46826 * 89.98488 * 27 26 25 44 44 H 1.09000 * 109.47037 * 209.97617 * 27 26 25 45 45 H 1.08993 * 109.47480 * 329.98081 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4426 5 1 2.9641 0.9131 -1.9816 6 8 1.2060 1.9935 -2.0814 7 6 3.3238 2.9681 -1.4444 8 7 3.5691 3.3918 -2.8294 9 6 4.4049 4.5991 -2.8704 10 6 4.6350 5.0024 -4.3041 11 8 4.1501 4.3486 -5.2032 12 7 5.3789 6.0901 -4.5871 13 6 5.5878 6.4572 -5.8913 14 1 5.1560 5.8750 -6.6920 15 6 6.3552 7.5783 -6.1832 16 7 6.8810 8.2863 -5.2089 17 14 6.6405 8.0781 -7.9603 18 1 5.9473 7.1221 -8.8607 19 1 6.1047 9.4452 -8.1822 20 1 8.0967 8.0639 -8.2508 21 6 2.1388 -1.1672 -0.0005 22 8 3.3526 -1.1683 0.0659 23 6 1.4021 -2.4458 -0.0817 24 6 1.9482 -3.7373 -0.2224 25 7 0.9248 -4.5569 -0.2443 26 7 -0.1601 -3.8763 -0.1359 27 6 -1.5048 -4.4575 -0.1220 28 7 0.0897 -2.6185 -0.0411 29 1 -0.3633 -0.1060 1.0223 30 1 -0.3633 0.9383 -0.4192 31 1 -0.3633 -0.8322 -0.6029 32 1 1.6085 2.0284 0.5138 33 1 3.1500 1.1384 0.5138 34 1 0.6955 2.6950 -1.6542 35 1 2.8121 3.7654 -0.9053 36 1 4.2745 2.7521 -0.9571 37 1 3.9848 2.6463 -3.3674 38 1 3.9009 5.4080 -2.3415 39 1 5.3630 4.3942 -2.3927 40 1 5.7664 6.6131 -3.8680 41 1 7.4170 9.0687 -5.4127 42 1 2.9938 -3.9985 -0.2927 43 1 -1.7902 -4.6885 0.9043 44 1 -2.2130 -3.7447 -0.5443 45 1 -1.5117 -5.3716 -0.7156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734529484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:59 Heat of formation + Delta-G solvation = -21.473143 kcal Electronic energy + Delta-G solvation = -28663.731330 eV Core-core repulsion = 24332.757239 eV Total energy + Delta-G solvation = -4330.974091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.73250 -40.97296 -40.16270 -38.79658 -36.59590 -36.09023 -35.53699 -34.79239 -33.79668 -33.27074 -31.61354 -29.30745 -28.67406 -27.54517 -26.73991 -25.29172 -23.96572 -23.06829 -22.71838 -21.09854 -20.77373 -19.91285 -18.48206 -18.28484 -18.09919 -17.94575 -17.36617 -17.14235 -16.93334 -16.60402 -16.19544 -16.06750 -15.87142 -15.77350 -15.23364 -15.07604 -14.64076 -14.43731 -14.12501 -13.84852 -13.81068 -13.64450 -13.55435 -13.44211 -13.19289 -13.00405 -12.92933 -12.77320 -12.58999 -12.40991 -12.11817 -12.03834 -11.80202 -11.54697 -11.51879 -11.43644 -11.11807 -10.50400 -10.35239 -10.01636 -9.61448 -9.29130 -8.47112 -5.95809 0.16810 0.83708 1.23878 1.36509 1.41649 1.56105 1.84978 2.05137 2.09597 2.29415 2.79519 2.90957 3.20039 3.44333 3.54340 3.68211 3.84864 3.92148 4.09870 4.14580 4.28607 4.31935 4.33292 4.39732 4.44282 4.47600 4.52191 4.56602 4.66607 4.67528 4.74916 4.80894 4.84934 5.01713 5.09607 5.40824 5.43946 5.59669 5.88141 6.10362 6.17023 6.31943 6.60276 6.87053 6.99616 7.06160 7.12662 7.56014 8.12078 8.70486 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.001648 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.420237 B =16983.474698 C =17157.723399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.590 5.590 3 C 0.090 3.910 4 C 0.107 3.893 5 H 0.067 0.933 6 O -0.559 6.559 7 C 0.033 3.967 8 N -0.675 5.675 9 C 0.066 3.934 10 C 0.436 3.564 11 O -0.625 6.625 12 N -0.573 5.573 13 C -0.335 4.335 14 H 0.077 0.923 15 C -0.012 4.012 16 N -0.919 5.919 17 Si 0.994 3.006 18 H -0.275 1.275 19 H -0.269 1.269 20 H -0.270 1.270 21 C 0.599 3.401 22 O -0.564 6.564 23 C -0.068 4.068 24 C 0.025 3.975 25 N -0.300 5.300 26 N -0.137 5.137 27 C 0.087 3.913 28 N -0.240 5.240 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.091 0.909 34 H 0.385 0.615 35 H 0.102 0.898 36 H 0.048 0.952 37 H 0.338 0.662 38 H 0.110 0.890 39 H 0.065 0.935 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.218 0.782 43 H 0.115 0.885 44 H 0.125 0.875 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.752 -20.637 19.307 33.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.320 5.320 3 C -0.033 4.033 4 C 0.046 3.954 5 H 0.085 0.915 6 O -0.366 6.366 7 C -0.097 4.097 8 N -0.307 5.307 9 C -0.067 4.067 10 C 0.223 3.777 11 O -0.512 6.512 12 N -0.210 5.210 13 C -0.465 4.465 14 H 0.095 0.905 15 C -0.212 4.212 16 N -0.560 5.560 17 Si 0.817 3.183 18 H -0.200 1.200 19 H -0.194 1.194 20 H -0.195 1.195 21 C 0.385 3.615 22 O -0.441 6.441 23 C -0.228 4.228 24 C -0.158 4.158 25 N -0.141 5.141 26 N -0.042 5.042 27 C -0.050 4.050 28 N -0.091 5.091 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.141 0.859 33 H 0.109 0.891 34 H 0.234 0.766 35 H 0.120 0.880 36 H 0.066 0.934 37 H 0.156 0.844 38 H 0.128 0.872 39 H 0.083 0.917 40 H 0.231 0.769 41 H 0.087 0.913 42 H 0.234 0.766 43 H 0.133 0.867 44 H 0.144 0.856 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.996 -21.547 18.325 34.072 hybrid contribution 2.174 0.923 -0.084 2.364 sum -16.821 -20.624 18.241 32.266 Atomic orbital electron populations 1.22237 0.76594 1.04786 1.02806 1.47612 1.08840 1.04747 1.70774 1.22298 0.99391 0.85079 0.96555 1.22097 0.85127 0.95265 0.92906 0.91504 1.86646 1.31929 1.59989 1.57992 1.22699 0.99781 0.98167 0.89054 1.60009 1.51233 1.06905 1.12540 1.21559 0.97401 0.95373 0.92334 1.20950 0.82049 0.82501 0.92172 1.90501 1.54653 1.56071 1.49942 1.41924 1.45861 1.25073 1.08152 1.19705 1.31226 1.10729 0.84840 0.90521 1.26037 0.95773 0.95541 1.03852 1.69676 1.34417 1.18420 1.33504 0.84866 0.78241 0.78148 0.77027 1.19990 1.19422 1.19547 1.16988 0.85744 0.82347 0.76449 1.90796 1.13953 1.87074 1.52320 1.22933 0.90113 0.96620 1.13171 1.25101 1.00834 0.87926 1.01903 1.74030 0.93329 1.26725 1.20005 1.48791 1.09150 1.00821 1.45422 1.22810 0.73362 1.01588 1.07276 1.74538 1.16125 1.01570 1.16841 0.91389 0.88979 0.89956 0.85856 0.89115 0.76551 0.88017 0.93383 0.84447 0.87206 0.91745 0.76893 0.91265 0.76579 0.86702 0.85650 0.86049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.02 9.42 127.77 1.20 2.23 16 2 N -0.59 -10.92 2.84 -850.22 -2.41 -13.33 16 3 C 0.09 1.43 5.07 86.38 0.44 1.87 16 4 C 0.11 2.28 3.42 30.60 0.10 2.39 16 5 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 6 O -0.56 -12.54 12.14 -148.98 -1.81 -14.35 16 7 C 0.03 0.71 5.35 86.31 0.46 1.17 16 8 N -0.68 -21.99 5.99 -517.94 -3.10 -25.10 16 9 C 0.07 2.28 6.17 85.56 0.53 2.80 16 10 C 0.44 21.39 7.82 87.66 0.69 22.08 16 11 O -0.63 -36.22 15.78 -3.05 -0.05 -36.27 16 12 N -0.57 -30.03 5.29 -306.99 -1.62 -31.65 16 13 C -0.34 -19.51 9.68 84.04 0.81 -18.69 16 14 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 15 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 16 N -0.92 -50.03 13.05 21.67 0.28 -49.75 16 17 Si 0.99 43.66 29.55 68.60 2.03 45.68 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 21 C 0.60 14.39 7.68 86.77 0.67 15.05 16 22 O -0.56 -16.84 16.52 -3.91 -0.06 -16.91 16 23 C -0.07 -1.46 6.87 42.24 0.29 -1.17 16 24 C 0.02 0.49 12.05 85.46 1.03 1.52 16 25 N -0.30 -5.46 12.01 -56.16 -0.67 -6.14 16 26 N -0.14 -1.97 4.34 -206.55 -0.90 -2.86 16 27 C 0.09 0.24 11.55 127.77 1.48 1.71 16 28 N -0.24 -4.16 8.71 -48.17 -0.42 -4.58 16 29 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.09 0.93 7.24 -2.38 -0.02 0.91 16 31 H 0.08 1.27 5.36 -2.39 -0.01 1.26 16 32 H 0.12 1.07 8.07 -2.39 -0.02 1.05 16 33 H 0.09 1.62 7.37 -2.39 -0.02 1.60 16 34 H 0.39 5.44 9.04 -74.05 -0.67 4.77 16 35 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.34 12.40 8.43 -89.69 -0.76 11.65 16 38 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 39 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 41 H 0.28 14.08 8.31 -92.70 -0.77 13.31 16 42 H 0.22 3.53 8.06 -2.91 -0.02 3.51 16 43 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 44 H 0.13 -0.10 8.14 -2.39 -0.02 -0.12 16 45 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 Total: -1.00 -83.75 388.33 -1.67 -85.42 By element: Atomic # 1 Polarization: 40.16 SS G_CDS: -1.09 Total: 39.06 kcal Atomic # 6 Polarization: 22.60 SS G_CDS: 8.16 Total: 30.76 kcal Atomic # 7 Polarization: -124.56 SS G_CDS: -8.85 Total: -133.40 kcal Atomic # 8 Polarization: -65.61 SS G_CDS: -1.92 Total: -67.53 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -83.75 -1.67 -85.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734529484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.950 kcal (2) G-P(sol) polarization free energy of solvation -83.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds