Wall clock time and date at job start Sat Apr 11 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47418 * 2 1 4 4 C 1.36937 * 119.99969 * 264.28946 * 3 2 1 5 5 H 1.08005 * 119.99769 * 188.63697 * 4 3 2 6 6 C 1.38805 * 119.99971 * 8.63689 * 4 3 2 7 7 N 1.31618 * 120.00260 * 24.60562 * 6 4 3 8 8 Si 1.86810 * 120.00107 * 204.60472 * 6 4 3 9 9 H 1.48503 * 109.46905 * 85.02336 * 8 6 4 10 10 H 1.48503 * 109.47187 * 205.02792 * 8 6 4 11 11 H 1.48500 * 109.46881 * 325.02460 * 8 6 4 12 12 C 1.46506 * 120.00218 * 84.28746 * 3 2 1 13 13 C 1.53001 * 109.47158 * 270.00363 * 12 3 2 14 14 C 1.52996 * 109.47020 * 180.02562 * 13 12 3 15 15 N 1.46507 * 109.47123 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00004 * 179.97438 * 15 14 13 17 17 O 1.21750 * 120.00002 * 0.02562 * 16 15 14 18 18 C 1.46224 * 119.99899 * 180.02562 * 16 15 14 19 19 S 1.76188 * 126.11037 * 359.68767 * 18 16 15 20 20 C 1.70912 * 90.42148 * 179.97438 * 19 18 16 21 21 N 1.37848 * 124.74831 * 180.02562 * 20 19 18 22 22 C 1.46498 * 119.99959 * 180.33144 * 21 20 19 23 23 C 1.46497 * 119.99645 * 0.32912 * 21 20 19 24 24 N 1.30231 * 110.50451 * 0.35254 * 20 19 18 25 25 C 1.30872 * 117.26293 * 359.72060 * 24 20 19 26 26 C 1.50699 * 122.98501 * 180.02562 * 25 24 20 27 27 H 1.09005 * 109.46890 * 59.99688 * 1 2 3 28 28 H 1.08995 * 109.47816 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47104 * 300.00333 * 1 2 3 30 30 H 1.09004 * 109.46732 * 239.99684 * 2 1 3 31 31 H 1.09002 * 109.46448 * 120.00047 * 2 1 3 32 32 H 0.97005 * 120.00161 * 179.97438 * 7 6 4 33 33 H 1.08995 * 109.46885 * 150.00026 * 12 3 2 34 34 H 1.08998 * 109.46930 * 30.00085 * 12 3 2 35 35 H 1.09000 * 109.47403 * 59.99582 * 13 12 3 36 36 H 1.09007 * 109.46874 * 299.99462 * 13 12 3 37 37 H 1.08998 * 109.46939 * 299.99644 * 14 13 12 38 38 H 1.09000 * 109.47433 * 59.99528 * 14 13 12 39 39 H 0.97001 * 119.99739 * 359.97438 * 15 14 13 40 40 H 1.09002 * 109.47334 * 90.00258 * 22 21 20 41 41 H 1.09003 * 109.46674 * 209.99854 * 22 21 20 42 42 H 1.08997 * 109.47275 * 329.99749 * 22 21 20 43 43 H 1.08997 * 109.47289 * 0.02562 * 23 21 20 44 44 H 1.09006 * 109.46978 * 120.00251 * 23 21 20 45 45 H 1.09002 * 109.47451 * 239.99678 * 23 21 20 46 46 H 1.09002 * 109.47115 * 269.97574 * 26 25 24 47 47 H 1.09000 * 109.47174 * 29.98162 * 26 25 24 48 48 H 1.09003 * 109.47212 * 149.97408 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3579 1.9873 -1.1800 5 1 2.8472 2.9501 -1.1713 6 6 2.0732 1.3643 -2.3873 7 7 1.0959 0.4857 -2.4602 8 14 3.0772 1.7729 -3.9088 9 1 4.3048 0.9375 -3.9308 10 1 2.2690 1.4975 -5.1238 11 1 3.4558 3.2086 -3.8811 12 6 2.1436 2.1139 1.2624 13 6 0.8339 2.8474 1.5584 14 6 0.9648 3.6132 2.8764 15 7 -0.2890 4.3161 3.1595 16 6 -0.4068 5.0606 4.2768 17 8 0.5290 5.1494 5.0506 18 6 -1.6585 5.7617 4.5596 19 16 -3.1045 5.7518 3.5530 20 6 -3.9027 6.7724 4.6677 21 7 -5.1955 7.2298 4.5278 22 6 -5.7757 8.1088 5.5461 23 6 -5.9891 6.8371 3.3607 24 7 -3.1162 7.0630 5.6642 25 6 -1.9134 6.5477 5.6487 26 6 -0.8995 6.7980 6.7351 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 0.8968 0.0507 -3.3040 33 1 2.9553 2.8370 1.1838 34 1 2.3579 1.4133 2.0695 35 1 0.0221 2.1243 1.6369 36 1 0.6195 3.5481 0.7513 37 1 1.1794 2.9129 3.6837 38 1 1.7765 4.3364 2.7975 39 1 -1.0345 4.2456 2.5428 40 1 -5.5737 9.1481 5.2869 41 1 -6.8529 7.9488 5.5930 42 1 -5.3323 7.8834 6.5160 43 1 -5.3947 6.1864 2.7193 44 1 -6.8814 6.3048 3.6906 45 1 -6.2821 7.7273 2.8042 46 1 -0.3093 7.6797 6.4852 47 1 -1.4143 6.9616 7.6818 48 1 -0.2414 5.9336 6.8242 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752214801.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:02 Heat of formation + Delta-G solvation = 23.020585 kcal Electronic energy + Delta-G solvation = -26890.233820 eV Core-core repulsion = 23107.482336 eV Total energy + Delta-G solvation = -3782.751484 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.31362 -40.27386 -38.30019 -37.84295 -36.25213 -33.79873 -32.44082 -32.09163 -30.78225 -29.37317 -29.19043 -27.41295 -26.76324 -25.08072 -23.20621 -22.89032 -22.40442 -21.91529 -20.41910 -19.28661 -18.69189 -18.00395 -17.44150 -16.99611 -16.92735 -16.57852 -16.23833 -15.77431 -15.75157 -15.37425 -15.10547 -14.83697 -14.61779 -14.43963 -14.29214 -13.83464 -13.67844 -13.49405 -13.45647 -13.31269 -13.28551 -13.09114 -13.04230 -12.88609 -12.59842 -12.53740 -12.19294 -12.13545 -12.08996 -11.64851 -11.34788 -11.19091 -11.15065 -11.02668 -10.71151 -10.33256 -10.31273 -10.11273 -8.80278 -8.65558 -7.76940 -5.08048 -0.56646 -0.06838 0.56901 1.47668 1.49678 1.53745 1.59056 1.70273 2.17836 2.19284 2.57599 3.31900 3.32556 3.66726 3.89565 4.03072 4.10407 4.13372 4.30762 4.34423 4.42306 4.49268 4.64464 4.67117 4.68582 4.73076 4.74848 4.79302 4.81753 4.85699 4.91383 4.94114 5.07136 5.21622 5.24678 5.29591 5.35000 5.43437 5.55628 5.60195 5.66232 5.78385 5.84873 6.20344 6.40326 6.43490 6.73561 7.13577 7.26293 7.98139 8.38121 9.24876 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.015251 B = 0.002251 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.512589 B =12435.268394 C =13352.855949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 N -0.612 5.612 4 C -0.254 4.254 5 H 0.071 0.929 6 C -0.051 4.051 7 N -0.915 5.915 8 Si 0.952 3.048 9 H -0.292 1.292 10 H -0.299 1.299 11 H -0.277 1.277 12 C 0.152 3.848 13 C -0.134 4.134 14 C 0.134 3.866 15 N -0.720 5.720 16 C 0.601 3.399 17 O -0.567 6.567 18 C -0.387 4.387 19 S 0.161 5.839 20 C 0.323 3.677 21 N -0.573 5.573 22 C 0.094 3.906 23 C 0.079 3.921 24 N -0.574 5.574 25 C 0.202 3.798 26 C -0.085 4.085 27 H 0.058 0.942 28 H 0.030 0.970 29 H 0.029 0.971 30 H 0.055 0.945 31 H 0.022 0.978 32 H 0.245 0.755 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.402 0.598 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.242 13.610 15.546 26.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.041 3.959 3 N -0.334 5.334 4 C -0.383 4.383 5 H 0.089 0.911 6 C -0.246 4.246 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.220 1.220 10 H -0.226 1.226 11 H -0.202 1.202 12 C 0.025 3.975 13 C -0.174 4.174 14 C 0.010 3.990 15 N -0.371 5.371 16 C 0.389 3.611 17 O -0.449 6.449 18 C -0.513 4.513 19 S 0.412 5.588 20 C -0.045 4.045 21 N -0.289 5.289 22 C -0.050 4.050 23 C -0.062 4.062 24 N -0.301 5.301 25 C 0.062 3.938 26 C -0.144 4.144 27 H 0.077 0.923 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.237 0.763 40 H 0.080 0.920 41 H 0.122 0.878 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.115 0.885 45 H 0.113 0.887 46 H 0.104 0.896 47 H 0.105 0.895 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.366 13.506 15.294 26.793 hybrid contribution 0.654 0.208 -0.756 1.021 sum -16.712 13.713 14.537 26.051 Atomic orbital electron populations 1.22193 0.98520 0.98670 1.00142 1.20706 0.93153 0.84499 0.97527 1.44417 1.76044 1.10644 1.02280 1.19490 1.30666 1.03489 0.84691 0.91147 1.25316 0.98950 1.00821 0.99516 1.70304 1.28179 1.32975 1.24803 0.85503 0.78717 0.77663 0.79911 1.21954 1.22568 1.20210 1.20821 0.94664 0.94541 0.87496 1.22373 1.01309 0.99048 0.94703 1.21288 0.85327 0.95172 0.97228 1.45932 1.17473 1.50082 1.23620 1.16747 0.85567 0.77839 0.80933 1.90740 1.40481 1.65174 1.48515 1.24936 1.00978 1.19713 1.05637 1.83551 1.04504 1.47567 1.23197 1.24068 0.91901 0.95056 0.93476 1.46219 1.07007 1.49954 1.25751 1.21902 0.99688 0.92931 0.90449 1.22237 0.95975 1.02418 0.85604 1.66094 1.04874 1.32321 1.26780 1.20771 0.90588 0.88551 0.93914 1.20621 0.95297 1.03923 0.94539 0.92343 0.95080 0.95182 0.92627 0.95972 0.94544 0.93297 0.92430 0.91990 0.93152 0.91362 0.91910 0.76255 0.91954 0.87780 0.91453 0.91041 0.88473 0.88742 0.89648 0.89521 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.05 9.58 71.98 0.69 -5.36 16 2 C 0.17 7.86 5.64 86.38 0.49 8.35 16 3 N -0.61 -29.35 2.54 -702.00 -1.78 -31.13 16 4 C -0.25 -13.46 9.70 84.03 0.82 -12.64 16 5 H 0.07 3.69 7.93 -2.91 -0.02 3.67 16 6 C -0.05 -2.77 4.91 84.86 0.42 -2.35 16 7 N -0.92 -51.01 8.54 21.65 0.18 -50.83 16 8 Si 0.95 44.38 29.62 68.60 2.03 46.41 16 9 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 10 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 12 C 0.15 5.86 5.71 86.38 0.49 6.35 16 13 C -0.13 -4.58 5.53 30.59 0.17 -4.41 16 14 C 0.13 4.04 5.67 86.38 0.49 4.53 16 15 N -0.72 -20.72 5.55 -467.50 -2.60 -23.32 16 16 C 0.60 18.63 7.76 86.32 0.67 19.30 16 17 O -0.57 -20.30 14.30 -4.51 -0.06 -20.36 16 18 C -0.39 -10.50 6.49 23.99 0.16 -10.34 16 19 S 0.16 3.27 20.44 -56.49 -1.15 2.11 16 20 C 0.32 6.53 7.72 179.42 1.38 7.91 16 21 N -0.57 -7.53 3.36 -761.39 -2.56 -10.09 16 22 C 0.09 0.86 10.59 127.77 1.35 2.21 16 23 C 0.08 0.51 10.70 127.77 1.37 1.87 16 24 N -0.57 -13.93 9.71 -188.53 -1.83 -15.76 16 25 C 0.20 5.33 6.83 42.34 0.29 5.62 16 26 C -0.09 -1.99 9.71 71.24 0.69 -1.30 16 27 H 0.06 3.00 6.28 -2.38 -0.01 2.98 16 28 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 29 H 0.03 1.20 5.98 -2.39 -0.01 1.18 16 30 H 0.06 2.99 5.87 -2.38 -0.01 2.97 16 31 H 0.02 0.95 7.97 -2.39 -0.02 0.93 16 32 H 0.24 13.45 8.31 -92.70 -0.77 12.68 16 33 H 0.05 1.86 8.03 -2.39 -0.02 1.84 16 34 H 0.06 2.02 7.95 -2.39 -0.02 2.01 16 35 H 0.06 2.18 5.93 -2.39 -0.01 2.16 16 36 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.40 10.38 7.64 -92.71 -0.71 9.67 16 40 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.10 0.32 8.07 -2.39 -0.02 0.30 16 42 H 0.07 0.86 7.59 -2.39 -0.02 0.84 16 43 H 0.07 0.56 6.31 -2.39 -0.02 0.55 16 44 H 0.10 0.25 8.14 -2.38 -0.02 0.23 16 45 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 46 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.09 2.32 6.04 -2.39 -0.01 2.30 16 Total: -1.00 -67.59 395.11 1.97 -65.62 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.26 Total: 17.60 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 9.47 Total: 19.74 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -8.58 Total: -131.13 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.06 Total: -20.36 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.15 Total: 2.11 kcal Total: -67.59 1.97 -65.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752214801.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.640 kcal (2) G-P(sol) polarization free energy of solvation -67.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds