Wall clock time and date at job start Sat Apr 11 2020 06:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 C 1.34948 * 126.03586 * 84.71410 * 4 2 1 6 6 C 1.35314 * 107.74400 * 179.84196 * 5 4 2 7 7 C 1.39862 * 107.92414 * 0.42379 * 6 5 4 8 8 C 1.50695 * 125.90409 * 179.71527 * 7 6 5 9 9 N 1.46907 * 109.47298 * 95.00072 * 8 7 6 10 10 C 1.46894 * 111.00073 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47113 * 179.97438 * 10 9 8 12 12 H 1.08999 * 109.46957 * 295.00162 * 11 10 9 13 13 C 1.52999 * 109.47368 * 174.99869 * 11 10 9 14 14 N 1.46504 * 109.47141 * 54.99497 * 11 10 9 15 15 C 1.34774 * 120.00411 * 204.99746 * 14 11 10 16 16 O 1.21288 * 119.99694 * 0.02562 * 15 14 11 17 17 C 1.50696 * 120.00455 * 180.02562 * 15 14 11 18 18 S 1.81000 * 109.47544 * 180.02562 * 17 15 14 19 19 C 1.76196 * 99.99965 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00268 * 359.97438 * 19 18 17 21 21 C 1.38794 * 119.99784 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00383 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99984 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46941 * 59.99960 * 23 21 19 25 25 H 1.48502 * 109.47111 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47309 * 299.99771 * 23 21 19 27 27 N 1.30838 * 108.20151 * 359.73815 * 7 6 5 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 35 35 H 1.08004 * 126.12543 * 0.02562 * 5 4 2 36 36 H 1.08006 * 126.03805 * 180.15864 * 6 5 4 37 37 H 1.08999 * 109.47679 * 215.00232 * 8 7 6 38 38 H 1.09004 * 109.47132 * 335.00490 * 8 7 6 39 39 H 1.00900 * 110.99684 * 303.95663 * 9 8 7 40 40 H 1.08996 * 109.46967 * 299.99583 * 10 9 8 41 41 H 1.09005 * 109.47335 * 59.99915 * 10 9 8 42 42 H 1.08999 * 109.47321 * 300.00070 * 13 11 10 43 43 H 1.09000 * 109.47297 * 60.00186 * 13 11 10 44 44 H 1.09008 * 109.46929 * 179.97438 * 13 11 10 45 45 H 0.96999 * 119.99799 * 25.00555 * 14 11 10 46 46 H 1.09002 * 109.47010 * 300.00761 * 17 15 14 47 47 H 1.09005 * 109.46879 * 59.99841 * 17 15 14 48 48 H 0.96997 * 120.00376 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1883 -0.1407 -2.4167 6 6 2.6568 -1.1052 -3.2420 7 6 2.7682 -2.2874 -2.5029 8 6 3.2457 -3.6165 -3.0285 9 7 4.6811 -3.7649 -2.7536 10 6 5.1827 -5.0518 -3.2537 11 6 6.6777 -5.1692 -2.9501 12 1 7.2229 -4.4097 -3.5105 13 6 7.1734 -6.5580 -3.3580 14 7 6.9017 -4.9724 -1.5157 15 6 8.0971 -4.5336 -1.0743 16 8 8.9873 -4.3012 -1.8645 17 6 8.3277 -4.3318 0.4012 18 16 10.0168 -3.7407 0.6727 19 6 10.0115 -3.5954 2.4286 20 1 9.1230 -3.8470 2.9887 21 6 11.1490 -3.1565 3.0920 22 7 12.2318 -2.8494 2.4094 23 14 11.1432 -3.0017 4.9536 24 1 10.8638 -4.3283 5.5597 25 1 12.4693 -2.5171 5.4141 26 1 10.0924 -2.0373 5.3669 27 7 2.3857 -2.0401 -1.2764 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.9890 0.8861 -2.6857 36 1 2.8978 -0.9846 -4.2879 37 1 2.6968 -4.4200 -2.5374 38 1 3.0750 -3.6645 -4.1041 39 1 5.2054 -2.9963 -3.1441 40 1 4.6473 -5.8653 -2.7643 41 1 5.0254 -5.1093 -4.3308 42 1 6.6282 -7.3175 -2.7976 43 1 7.0068 -6.7044 -4.4252 44 1 8.2386 -6.6414 -3.1421 45 1 6.1896 -5.1580 -0.8838 46 1 7.6198 -3.5956 0.7822 47 1 8.1848 -5.2776 0.9240 48 1 13.0268 -2.5430 2.8731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754259962.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:12 Heat of formation + Delta-G solvation = 31.798237 kcal Electronic energy + Delta-G solvation = -26415.093960 eV Core-core repulsion = 22632.723104 eV Total energy + Delta-G solvation = -3782.370856 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.44521 -39.25934 -37.13200 -36.07113 -34.29310 -32.36244 -31.49626 -30.48165 -30.04699 -28.37372 -27.79485 -26.98160 -25.41198 -24.10151 -22.83699 -21.49824 -20.35620 -20.13158 -19.85766 -17.75687 -17.38285 -16.58224 -16.24899 -15.67223 -15.21005 -15.10207 -14.80947 -14.74329 -14.59556 -14.33797 -13.98807 -13.88306 -13.72218 -13.28156 -13.11753 -13.01703 -12.75074 -12.68728 -12.59495 -12.44919 -12.20627 -12.01766 -11.85578 -11.81917 -11.55659 -11.49961 -10.99130 -10.97565 -10.89193 -10.70549 -10.69757 -9.74544 -9.48003 -9.21925 -8.99731 -8.79400 -8.67163 -8.59195 -8.14466 -6.41068 -6.14978 -3.84282 1.71770 2.22936 2.54692 3.16093 3.27437 3.29232 3.31770 3.38856 3.85849 4.05069 4.11685 4.27471 4.41374 4.50444 4.55702 4.62134 4.73074 4.90435 4.98870 5.06657 5.14789 5.19206 5.19806 5.27754 5.30270 5.33758 5.34784 5.42542 5.44401 5.51115 5.54844 5.64551 5.66069 5.68590 5.80782 5.88066 6.03938 6.10299 6.23299 6.29557 6.44189 6.73275 6.84140 6.89552 7.15381 7.60548 7.66073 7.97556 8.42049 8.82693 9.30177 10.92447 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.007951 B = 0.002668 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3520.905171 B =10493.682438 C =13390.223826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 C -0.165 4.165 4 N -0.365 5.365 5 C 0.054 3.946 6 C -0.270 4.270 7 C 0.073 3.927 8 C 0.143 3.857 9 N -0.679 5.679 10 C 0.053 3.947 11 C 0.146 3.854 12 H 0.084 0.916 13 C -0.162 4.162 14 N -0.719 5.719 15 C 0.534 3.466 16 O -0.526 6.526 17 C -0.151 4.151 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.071 0.929 21 C 0.073 3.927 22 N -0.869 5.869 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 N -0.271 5.271 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.169 0.831 36 H 0.143 0.857 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.348 0.652 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.401 0.599 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.533 2.999 -11.736 29.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.051 3.949 3 C -0.223 4.223 4 N -0.148 5.148 5 C -0.092 4.092 6 C -0.300 4.300 7 C -0.095 4.095 8 C 0.012 3.988 9 N -0.311 5.311 10 C -0.077 4.077 11 C 0.040 3.960 12 H 0.102 0.898 13 C -0.221 4.221 14 N -0.373 5.373 15 C 0.320 3.680 16 O -0.401 6.401 17 C -0.302 4.302 18 S 0.165 5.835 19 C -0.682 4.682 20 H 0.089 0.911 21 C -0.136 4.136 22 N -0.504 5.504 23 Si 0.744 3.256 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.200 1.200 27 N -0.093 5.093 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.186 0.814 36 H 0.161 0.839 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.166 0.834 40 H 0.097 0.903 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.235 0.765 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -25.199 2.824 -11.116 27.686 hybrid contribution -1.290 0.430 0.656 1.510 sum -26.489 3.254 -10.460 28.664 Atomic orbital electron populations 1.22234 0.93695 1.03250 1.02977 1.21284 0.94638 0.92873 0.86081 1.22202 1.02762 0.93837 1.03526 1.48885 1.50235 1.07368 1.08298 1.22394 1.01303 0.99813 0.85696 1.21367 1.14449 0.92761 1.01445 1.22069 0.99807 0.96217 0.91365 1.20155 0.89208 0.91759 0.97648 1.60323 1.02256 1.04415 1.64106 1.22299 0.94946 0.92348 0.98104 1.20829 0.94091 0.97841 0.83203 0.89757 1.22155 1.02757 0.96279 1.00951 1.45849 1.14767 1.69364 1.07270 1.20228 0.81674 0.75577 0.90499 1.90679 1.42702 1.49739 1.56996 1.23511 1.07365 1.04861 0.94475 1.85331 1.04861 1.85413 1.07908 1.22845 1.01719 1.51817 0.91816 0.91051 1.24981 0.94614 0.94728 0.99282 1.70014 1.02403 1.42073 1.35956 0.86243 0.77413 0.78643 0.83304 1.19957 1.20859 1.19983 1.77372 1.19719 0.92831 1.19408 0.91641 0.92029 0.90433 0.87781 0.91141 0.91654 0.89889 0.81393 0.83878 0.89678 0.93302 0.83388 0.90281 0.93757 0.92471 0.92043 0.91394 0.76461 0.89328 0.89476 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 9.52 37.16 0.35 -0.59 16 2 C 0.15 1.15 3.93 -67.93 -0.27 0.89 16 3 C -0.17 -0.93 8.84 37.16 0.33 -0.60 16 4 N -0.37 -3.76 3.52 -54.86 -0.19 -3.95 16 5 C 0.05 0.48 10.59 -17.22 -0.18 0.30 16 6 C -0.27 -2.62 10.74 -40.02 -0.43 -3.05 16 7 C 0.07 0.81 6.73 -82.41 -0.55 0.25 16 8 C 0.14 1.30 6.24 -4.97 -0.03 1.27 16 9 N -0.68 -6.89 6.21 -115.06 -0.72 -7.61 16 10 C 0.05 0.46 5.24 -3.83 -0.02 0.44 16 11 C 0.15 1.74 2.81 -67.93 -0.19 1.55 16 12 H 0.08 1.17 7.58 -51.93 -0.39 0.78 16 13 C -0.16 -1.79 9.48 37.16 0.35 -1.44 16 14 N -0.72 -10.35 4.80 -53.81 -0.26 -10.61 16 15 C 0.53 10.48 7.81 -10.99 -0.09 10.39 16 16 O -0.53 -12.27 15.53 5.55 0.09 -12.19 16 17 C -0.15 -3.25 6.16 36.00 0.22 -3.03 16 18 S -0.06 -1.74 20.57 -107.50 -2.21 -3.95 16 19 C -0.53 -15.67 9.50 30.94 0.29 -15.38 16 20 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 22 N -0.87 -26.76 13.22 55.49 0.73 -26.03 16 23 Si 0.92 21.91 29.55 -169.99 -5.02 16.89 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 27 N -0.27 -3.49 12.58 33.67 0.42 -3.07 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.29 7.16 -51.93 -0.37 -0.08 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.17 0.95 7.27 -52.48 -0.38 0.57 16 36 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.35 3.78 8.72 -39.29 -0.34 3.43 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 45 H 0.40 5.12 8.60 -40.82 -0.35 4.77 16 46 H 0.09 1.82 8.14 -51.91 -0.42 1.40 16 47 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 48 H 0.27 7.67 8.31 -40.82 -0.34 7.34 16 LS Contribution 416.03 15.07 6.27 6.27 Total: -1.00 -36.81 416.03 -9.35 -46.16 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -8.15 Total: 5.04 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -0.31 Total: -6.95 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.01 Total: -51.27 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -36.81 -9.35 -46.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754259962.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.955 kcal (2) G-P(sol) polarization free energy of solvation -36.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds