Wall clock time and date at job start Sat Apr 11 2020 06:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 C 1.34948 * 126.03586 * 84.71410 * 4 2 1 6 6 C 1.35314 * 107.74400 * 179.84196 * 5 4 2 7 7 C 1.39862 * 107.92414 * 0.42379 * 6 5 4 8 8 C 1.50695 * 125.90409 * 179.71527 * 7 6 5 9 9 N 1.46907 * 109.47298 * 95.00072 * 8 7 6 10 10 C 1.46894 * 111.00073 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47113 * 179.97438 * 10 9 8 12 12 H 1.08999 * 109.46957 * 295.00162 * 11 10 9 13 13 C 1.52999 * 109.47368 * 174.99869 * 11 10 9 14 14 N 1.46504 * 109.47141 * 54.99497 * 11 10 9 15 15 C 1.34774 * 120.00411 * 204.99746 * 14 11 10 16 16 O 1.21288 * 119.99694 * 0.02562 * 15 14 11 17 17 C 1.50696 * 120.00455 * 180.02562 * 15 14 11 18 18 S 1.81000 * 109.47544 * 180.02562 * 17 15 14 19 19 C 1.76196 * 99.99965 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00268 * 359.97438 * 19 18 17 21 21 C 1.38794 * 119.99784 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00383 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99984 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46941 * 59.99960 * 23 21 19 25 25 H 1.48502 * 109.47111 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47309 * 299.99771 * 23 21 19 27 27 N 1.30838 * 108.20151 * 359.73815 * 7 6 5 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 35 35 H 1.08004 * 126.12543 * 0.02562 * 5 4 2 36 36 H 1.08006 * 126.03805 * 180.15864 * 6 5 4 37 37 H 1.08999 * 109.47679 * 215.00232 * 8 7 6 38 38 H 1.09004 * 109.47132 * 335.00490 * 8 7 6 39 39 H 1.00900 * 110.99684 * 303.95663 * 9 8 7 40 40 H 1.08996 * 109.46967 * 299.99583 * 10 9 8 41 41 H 1.09005 * 109.47335 * 59.99915 * 10 9 8 42 42 H 1.08999 * 109.47321 * 300.00070 * 13 11 10 43 43 H 1.09000 * 109.47297 * 60.00186 * 13 11 10 44 44 H 1.09008 * 109.46929 * 179.97438 * 13 11 10 45 45 H 0.96999 * 119.99799 * 25.00555 * 14 11 10 46 46 H 1.09002 * 109.47010 * 300.00761 * 17 15 14 47 47 H 1.09005 * 109.46879 * 59.99841 * 17 15 14 48 48 H 0.96997 * 120.00376 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1883 -0.1407 -2.4167 6 6 2.6568 -1.1052 -3.2420 7 6 2.7682 -2.2874 -2.5029 8 6 3.2457 -3.6165 -3.0285 9 7 4.6811 -3.7649 -2.7536 10 6 5.1827 -5.0518 -3.2537 11 6 6.6777 -5.1692 -2.9501 12 1 7.2229 -4.4097 -3.5105 13 6 7.1734 -6.5580 -3.3580 14 7 6.9017 -4.9724 -1.5157 15 6 8.0971 -4.5336 -1.0743 16 8 8.9873 -4.3012 -1.8645 17 6 8.3277 -4.3318 0.4012 18 16 10.0168 -3.7407 0.6727 19 6 10.0115 -3.5954 2.4286 20 1 9.1230 -3.8470 2.9887 21 6 11.1490 -3.1565 3.0920 22 7 12.2318 -2.8494 2.4094 23 14 11.1432 -3.0017 4.9536 24 1 10.8638 -4.3283 5.5597 25 1 12.4693 -2.5171 5.4141 26 1 10.0924 -2.0373 5.3669 27 7 2.3857 -2.0401 -1.2764 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.9890 0.8861 -2.6857 36 1 2.8978 -0.9846 -4.2879 37 1 2.6968 -4.4200 -2.5374 38 1 3.0750 -3.6645 -4.1041 39 1 5.2054 -2.9963 -3.1441 40 1 4.6473 -5.8653 -2.7643 41 1 5.0254 -5.1093 -4.3308 42 1 6.6282 -7.3175 -2.7976 43 1 7.0068 -6.7044 -4.4252 44 1 8.2386 -6.6414 -3.1421 45 1 6.1896 -5.1580 -0.8838 46 1 7.6198 -3.5956 0.7822 47 1 8.1848 -5.2776 0.9240 48 1 13.0268 -2.5430 2.8731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754259962.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:11 Heat of formation + Delta-G solvation = 4.868354 kcal Electronic energy + Delta-G solvation = -26416.261727 eV Core-core repulsion = 22632.723104 eV Total energy + Delta-G solvation = -3783.538623 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.15427 -40.68855 -38.07897 -36.79656 -35.30345 -34.58828 -32.72923 -31.31105 -30.77382 -29.89677 -28.25412 -27.72634 -27.65238 -24.89068 -23.46966 -22.58781 -21.49487 -21.01389 -20.62885 -19.81713 -18.04600 -17.86700 -17.54450 -16.88387 -16.48049 -16.31360 -16.25668 -15.81500 -15.64176 -15.41960 -15.02647 -14.71660 -14.57176 -14.55732 -14.37783 -13.97510 -13.80911 -13.70147 -13.23046 -13.20329 -13.17104 -13.15035 -12.90760 -12.87454 -12.79440 -12.60589 -12.53891 -12.35428 -12.07659 -11.83559 -11.71418 -11.45351 -11.13459 -10.85750 -10.28446 -10.24886 -9.98346 -9.50953 -9.31680 -8.66222 -8.34684 -6.12667 1.00160 1.27298 1.43015 1.46317 1.57340 1.60153 1.70517 1.81843 2.27019 2.39783 2.98753 3.27873 3.35602 3.49853 3.82335 3.87884 3.94060 3.96163 4.07836 4.09024 4.19566 4.28422 4.33514 4.44040 4.51545 4.58091 4.60802 4.64822 4.66902 4.76062 4.78031 4.81117 4.81449 4.84608 4.93046 5.10202 5.13522 5.17451 5.22307 5.31323 5.40667 5.63259 5.73766 6.04795 6.19285 6.21280 6.34371 6.63215 6.86233 7.05986 7.35611 8.74456 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.007951 B = 0.002668 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3520.905171 B =10493.682438 C =13390.223826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.144 3.856 3 C -0.158 4.158 4 N -0.371 5.371 5 C 0.055 3.945 6 C -0.286 4.286 7 C 0.061 3.939 8 C 0.148 3.852 9 N -0.694 5.694 10 C 0.065 3.935 11 C 0.144 3.856 12 H 0.063 0.937 13 C -0.157 4.157 14 N -0.694 5.694 15 C 0.535 3.465 16 O -0.569 6.569 17 C -0.128 4.128 18 S -0.147 6.147 19 C -0.549 4.549 20 H 0.079 0.921 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.262 1.262 25 H -0.276 1.276 26 H -0.263 1.263 27 N -0.321 5.321 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.201 0.799 36 H 0.161 0.839 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.341 0.659 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.032 0.968 45 H 0.413 0.587 46 H 0.099 0.901 47 H 0.105 0.895 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.157 3.091 -11.519 31.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 C -0.216 4.216 4 N -0.154 5.154 5 C -0.091 4.091 6 C -0.316 4.316 7 C -0.106 4.106 8 C 0.018 3.982 9 N -0.326 5.326 10 C -0.065 4.065 11 C 0.039 3.961 12 H 0.081 0.919 13 C -0.215 4.215 14 N -0.347 5.347 15 C 0.321 3.679 16 O -0.449 6.449 17 C -0.280 4.280 18 S 0.080 5.920 19 C -0.697 4.697 20 H 0.097 0.903 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.186 1.186 25 H -0.201 1.201 26 H -0.188 1.188 27 N -0.143 5.143 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.217 0.783 36 H 0.178 0.822 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.159 0.841 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.052 0.948 45 H 0.249 0.751 46 H 0.117 0.883 47 H 0.123 0.877 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -27.886 2.885 -10.908 30.082 hybrid contribution -0.582 0.398 0.504 0.866 sum -28.468 3.283 -10.404 30.487 Atomic orbital electron populations 1.22170 0.92209 1.02492 1.04375 1.21518 0.95811 0.93520 0.84841 1.22179 1.01460 0.92723 1.05272 1.49145 1.50074 1.06831 1.09387 1.22961 1.00039 1.01091 0.85044 1.21693 1.14872 0.92530 1.02462 1.22473 0.99443 0.97442 0.91199 1.20179 0.88283 0.90918 0.98826 1.60308 1.02898 1.04678 1.64751 1.22229 0.92175 0.92208 0.99839 1.21056 0.96378 0.97907 0.80803 0.91896 1.22096 1.00582 0.95836 1.03034 1.45680 1.13006 1.66988 1.09019 1.19921 0.82763 0.75919 0.89292 1.90667 1.44470 1.52154 1.57565 1.23354 1.02585 1.05514 0.96523 1.85473 1.11130 1.86437 1.08942 1.23170 1.02409 1.52230 0.91855 0.90270 1.26133 0.93901 0.93835 1.05241 1.70177 1.03246 1.42891 1.38419 0.85008 0.77904 0.79265 0.75835 1.18644 1.20113 1.18751 1.77283 1.21650 0.94676 1.20739 0.93426 0.91221 0.88372 0.89417 0.93042 0.90033 0.88031 0.78261 0.82169 0.89727 0.91066 0.84092 0.88774 0.91128 0.90829 0.89342 0.94832 0.75113 0.88288 0.87718 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.52 71.98 0.69 -0.92 16 2 C 0.14 2.09 3.93 44.99 0.18 2.27 16 3 C -0.16 -1.55 8.84 71.98 0.64 -0.92 16 4 N -0.37 -7.49 3.52 -327.48 -1.15 -8.64 16 5 C 0.05 0.90 10.59 83.54 0.89 1.79 16 6 C -0.29 -5.19 10.74 21.99 0.24 -4.95 16 7 C 0.06 1.31 6.73 43.10 0.29 1.60 16 8 C 0.15 2.46 6.24 85.55 0.53 2.99 16 9 N -0.69 -13.04 6.21 -517.94 -3.22 -16.25 16 10 C 0.06 0.97 5.24 86.30 0.45 1.42 16 11 C 0.14 3.23 2.81 44.99 0.13 3.36 16 12 H 0.06 1.74 7.58 -2.39 -0.02 1.72 16 13 C -0.16 -3.20 9.48 71.98 0.68 -2.51 16 14 N -0.69 -19.41 4.80 -442.53 -2.12 -21.54 16 15 C 0.54 21.24 7.81 87.66 0.68 21.92 16 16 O -0.57 -27.51 15.53 -3.05 -0.05 -27.56 16 17 C -0.13 -5.56 6.16 71.23 0.44 -5.12 16 18 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 19 C -0.55 -32.63 9.50 67.95 0.65 -31.99 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 21 C 0.01 0.80 5.49 84.86 0.47 1.27 16 22 N -0.91 -57.27 13.22 21.65 0.29 -56.99 16 23 Si 1.00 44.82 29.55 68.60 2.03 46.84 16 24 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 26 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 27 N -0.32 -8.28 12.58 -47.39 -0.60 -8.87 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 0.53 7.16 -2.39 -0.02 0.51 16 34 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.20 1.74 7.27 -2.91 -0.02 1.72 16 36 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.34 7.12 8.72 -89.69 -0.78 6.34 16 40 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.41 9.83 8.60 -92.71 -0.80 9.03 16 46 H 0.10 4.06 8.14 -2.39 -0.02 4.04 16 47 H 0.10 4.13 8.14 -2.39 -0.02 4.11 16 48 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -83.80 416.03 0.33 -83.47 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.62 Total: 29.02 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 6.94 Total: -9.78 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -6.81 Total: -112.29 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.05 Total: -27.56 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -83.80 0.33 -83.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754259962.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.342 kcal (2) G-P(sol) polarization free energy of solvation -83.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds