Wall clock time and date at job start Sat Apr 11 2020 06:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46895 * 111.00449 * 2 1 4 4 C 1.53007 * 109.47041 * 293.95763 * 3 2 1 5 5 C 1.52998 * 109.47076 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47017 * 179.97438 * 5 4 3 7 7 C 1.46495 * 119.99726 * 89.99867 * 6 5 4 8 8 C 1.34776 * 120.00139 * 270.00173 * 6 5 4 9 9 O 1.21282 * 120.00018 * 359.97438 * 8 6 5 10 10 C 1.50696 * 120.00126 * 179.97438 * 8 6 5 11 11 S 1.80996 * 109.47331 * 179.97438 * 10 8 6 12 12 C 1.76195 * 100.00382 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99865 * 0.02562 * 12 11 10 14 14 C 1.38794 * 120.00302 * 179.97438 * 12 11 10 15 15 N 1.31632 * 120.00173 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 120.00069 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.46851 * 60.00712 * 16 14 12 18 18 H 1.48502 * 109.47114 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47232 * 300.00510 * 16 14 12 20 20 C 1.46904 * 111.00005 * 123.95374 * 2 1 3 21 21 C 1.50700 * 109.47168 * 66.04867 * 20 2 1 22 22 N 1.30502 * 125.64425 * 270.27392 * 21 20 2 23 23 C 1.34127 * 109.25683 * 180.14781 * 22 21 20 24 24 C 1.34672 * 108.01948 * 359.61488 * 23 22 21 25 25 N 1.35041 * 125.65474 * 89.99517 * 21 20 2 26 26 C 1.46499 * 126.39624 * 0.02562 * 25 21 20 27 27 H 1.09002 * 109.46767 * 296.04371 * 1 2 3 28 28 H 1.08995 * 109.46791 * 56.04528 * 1 2 3 29 29 H 1.08996 * 109.47215 * 176.04890 * 1 2 3 30 30 H 1.09005 * 109.47278 * 53.95384 * 3 2 1 31 31 H 1.08998 * 109.47628 * 173.95310 * 3 2 1 32 32 H 1.09007 * 109.46933 * 299.99401 * 4 3 2 33 33 H 1.08998 * 109.47279 * 59.99334 * 4 3 2 34 34 H 1.08996 * 109.47371 * 299.99951 * 5 4 3 35 35 H 1.09003 * 109.47037 * 59.99960 * 5 4 3 36 36 H 1.09006 * 109.47298 * 90.00537 * 7 6 5 37 37 H 1.09003 * 109.47269 * 209.99688 * 7 6 5 38 38 H 1.08992 * 109.47401 * 330.00125 * 7 6 5 39 39 H 1.08997 * 109.47426 * 300.00092 * 10 8 6 40 40 H 1.09005 * 109.47079 * 60.00275 * 10 8 6 41 41 H 0.96996 * 120.00282 * 179.97438 * 15 14 12 42 42 H 1.08994 * 109.46963 * 306.04497 * 20 2 1 43 43 H 1.09006 * 109.46688 * 186.04292 * 20 2 1 44 44 H 1.08002 * 125.99481 * 179.88589 * 23 22 21 45 45 H 1.07997 * 126.59503 * 180.24939 * 24 23 22 46 46 H 1.09003 * 109.47221 * 270.01947 * 26 25 21 47 47 H 1.09003 * 109.47097 * 30.02049 * 26 25 21 48 48 H 1.09001 * 109.46668 * 150.02021 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1793 3.4860 -1.3180 6 7 1.8313 4.1427 -2.5806 7 6 0.5744 4.8861 -2.6972 8 6 2.6673 4.0628 -3.6346 9 8 3.7081 3.4476 -3.5379 10 6 2.3090 4.7378 -4.9334 11 16 3.6225 4.4505 -6.1451 12 6 2.9622 5.3243 -7.5253 13 1 2.0090 5.8250 -7.4416 14 6 3.6675 5.3701 -8.7198 15 7 4.8296 4.7603 -8.8218 16 14 2.9670 6.2960 -10.1833 17 1 2.7802 7.7243 -9.8220 18 1 3.9058 6.1935 -11.3293 19 1 1.6580 5.7059 -10.5619 20 6 1.9954 -0.7660 1.1376 21 6 1.6370 -2.2204 0.9729 22 7 0.5489 -2.7902 1.4139 23 6 0.5680 -4.0914 1.0890 24 6 1.7074 -4.3355 0.4138 25 7 2.3859 -3.1489 0.3399 26 6 3.6825 -2.9276 -0.3051 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0708 30 1 1.5612 1.9273 0.8309 31 1 3.0798 1.3443 0.1083 32 1 2.0658 1.5015 -2.1492 33 1 0.5472 2.0844 -1.4265 34 1 1.7447 4.0416 -0.4872 35 1 3.2636 3.4592 -1.2096 36 1 0.7393 5.9255 -2.4130 37 1 0.2210 4.8430 -3.7275 38 1 -0.1723 4.4433 -2.0382 39 1 1.3715 4.3281 -5.3094 40 1 2.1966 5.8092 -4.7672 41 1 5.3224 4.7920 -9.6567 42 1 1.5611 -0.3872 2.0628 43 1 3.0798 -0.6611 1.1756 44 1 -0.1982 -4.8155 1.3235 45 1 2.0247 -5.2848 0.0083 46 1 3.5273 -2.6544 -1.3488 47 1 4.2102 -2.1227 0.2066 48 1 4.2748 -3.8412 -0.2528 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755033244.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:23 Heat of formation + Delta-G solvation = 38.339551 kcal Electronic energy + Delta-G solvation = -26506.054593 eV Core-core repulsion = 22723.967390 eV Total energy + Delta-G solvation = -3782.087203 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.32667 -39.51417 -37.99009 -35.52035 -34.24948 -32.79201 -32.42698 -30.53245 -29.05222 -27.70359 -27.23889 -26.90523 -25.69442 -25.33527 -23.13563 -21.61385 -21.06986 -19.93016 -19.16735 -17.67213 -17.32334 -16.75246 -16.39827 -16.08172 -15.68350 -15.47955 -15.12947 -14.80316 -14.76730 -14.58481 -14.12054 -13.86087 -13.71061 -13.27887 -13.13151 -13.09764 -12.97000 -12.77505 -12.58715 -12.55440 -12.31648 -12.07133 -12.03273 -11.77663 -11.58980 -11.55750 -11.04205 -11.03888 -10.77274 -10.65510 -10.22598 -9.82355 -9.81255 -9.34770 -9.05774 -8.80587 -8.57774 -8.48945 -8.22723 -6.49768 -6.21361 -3.91894 1.75075 2.53455 2.81313 2.96633 3.07434 3.23371 3.26065 3.29141 3.59601 3.75838 4.19523 4.20705 4.42521 4.46019 4.70361 4.76180 4.82328 4.90573 4.98286 5.07492 5.13387 5.14411 5.15259 5.18315 5.23278 5.26920 5.34103 5.39454 5.43336 5.48230 5.52374 5.59469 5.62223 5.71184 5.86072 5.91465 6.03531 6.05300 6.14308 6.19898 6.50385 6.64887 6.68957 6.72668 6.92808 7.54599 7.59550 7.85798 8.35140 8.57771 9.23760 10.85995 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.016256 B = 0.001906 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.976003 B =14684.633797 C =15582.700163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.539 5.539 3 C 0.061 3.939 4 C -0.131 4.131 5 C 0.120 3.880 6 N -0.625 5.625 7 C 0.081 3.919 8 C 0.533 3.467 9 O -0.515 6.515 10 C -0.150 4.150 11 S -0.062 6.062 12 C -0.535 4.535 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.868 5.868 16 Si 0.918 3.082 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.139 3.861 21 C 0.215 3.785 22 N -0.490 5.490 23 C -0.031 4.031 24 C -0.058 4.058 25 N -0.448 5.448 26 C 0.072 3.928 27 H 0.028 0.972 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.269 0.731 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.168 0.832 45 H 0.173 0.827 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.834 -11.791 22.106 26.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.263 5.263 3 C -0.067 4.067 4 C -0.170 4.170 5 C -0.004 4.004 6 N -0.361 5.361 7 C -0.063 4.063 8 C 0.321 3.679 9 O -0.389 6.389 10 C -0.301 4.301 11 S 0.165 5.835 12 C -0.683 4.683 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 C 0.009 3.991 21 C -0.048 4.048 22 N -0.209 5.209 23 C -0.179 4.179 24 C -0.192 4.192 25 N -0.130 5.130 26 C -0.070 4.070 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.107 0.893 44 H 0.186 0.814 45 H 0.191 0.809 46 H 0.102 0.898 47 H 0.105 0.895 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.439 -12.542 22.053 26.174 hybrid contribution -1.424 1.119 -0.878 2.012 sum -7.863 -11.423 21.176 25.312 Atomic orbital electron populations 1.22442 0.86404 1.03051 1.00432 1.61913 1.09052 1.13797 1.41571 1.22051 1.00326 0.87203 0.97153 1.21967 1.01315 0.95791 0.97953 1.21300 1.01787 0.92024 0.85257 1.47848 1.21552 1.54255 1.12441 1.21752 0.85450 0.95891 1.03160 1.20334 0.83171 0.79930 0.84493 1.90686 1.24123 1.41321 1.82777 1.23557 1.06566 1.02867 0.97097 1.85370 1.23360 1.70521 1.04269 1.22819 1.08813 1.38526 0.98187 0.91011 1.24990 0.94725 0.95541 0.98324 1.70007 1.12667 1.40787 1.26843 0.86231 0.78791 0.79903 0.80617 1.19937 1.20815 1.19940 1.20322 1.00288 0.84920 0.93525 1.22946 0.89648 0.93275 0.98932 1.70229 1.19537 1.07351 1.23813 1.22268 0.98507 0.93537 1.03609 1.22724 0.96645 0.90831 1.08958 1.45240 1.17873 1.08578 1.41264 1.22082 0.82034 1.03608 0.99311 0.95343 0.91202 0.90746 0.94458 0.90367 0.90293 0.91821 0.91091 0.89794 0.92754 0.90692 0.91505 0.89305 0.89327 0.92146 0.91578 0.89328 0.81433 0.80945 0.89752 0.89453 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.17 60.06 0.55 0.79 16 2 N -0.54 -5.24 4.75 -244.37 -1.16 -6.40 16 3 C 0.06 0.53 4.96 -3.82 -0.02 0.51 16 4 C -0.13 -1.41 5.47 -26.73 -0.15 -1.55 16 5 C 0.12 1.36 5.41 -4.04 -0.02 1.34 16 6 N -0.62 -8.64 2.87 -181.57 -0.52 -9.16 16 7 C 0.08 0.83 10.24 59.84 0.61 1.44 16 8 C 0.53 10.06 7.69 -10.99 -0.08 9.98 16 9 O -0.52 -11.59 15.44 5.56 0.09 -11.50 16 10 C -0.15 -3.06 4.71 36.00 0.17 -2.89 16 11 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 12 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 13 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 14 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 15 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 16 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 C 0.14 1.21 5.27 -4.97 -0.03 1.19 16 21 C 0.21 2.26 6.54 -155.42 -1.02 1.25 16 22 N -0.49 -5.87 10.49 -10.81 -0.11 -5.98 16 23 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 24 C -0.06 -0.50 11.58 -16.56 -0.19 -0.69 16 25 N -0.45 -4.05 3.15 -121.27 -0.38 -4.44 16 26 C 0.07 0.44 10.97 59.85 0.66 1.10 16 27 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.68 6.30 -51.93 -0.33 0.35 16 29 H 0.07 0.86 6.71 -51.93 -0.35 0.51 16 30 H 0.04 0.28 8.12 -51.93 -0.42 -0.14 16 31 H 0.08 0.65 7.93 -51.93 -0.41 0.24 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.65 6.47 -51.93 -0.34 0.31 16 34 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 35 H 0.08 1.08 7.42 -51.93 -0.39 0.70 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.80 6.44 -51.93 -0.33 0.46 16 38 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 39 H 0.09 1.68 7.40 -51.92 -0.38 1.30 16 40 H 0.09 1.68 8.11 -51.91 -0.42 1.26 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 43 H 0.09 0.61 6.86 -51.93 -0.36 0.26 16 44 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 45 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.09 0.44 7.05 -51.93 -0.37 0.08 16 48 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 406.26 15.07 6.12 6.12 Total: -1.00 -36.66 406.26 -9.86 -46.52 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -7.86 Total: -1.20 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 0.47 Total: -1.00 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -1.45 Total: -51.39 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.66 -9.86 -46.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755033244.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.858 kcal (2) G-P(sol) polarization free energy of solvation -36.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds