Wall clock time and date at job start Sat Apr 11 2020 06:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46895 * 111.00449 * 2 1 4 4 C 1.53007 * 109.47041 * 293.95763 * 3 2 1 5 5 C 1.52998 * 109.47076 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47017 * 179.97438 * 5 4 3 7 7 C 1.46495 * 119.99726 * 89.99867 * 6 5 4 8 8 C 1.34776 * 120.00139 * 270.00173 * 6 5 4 9 9 O 1.21282 * 120.00018 * 359.97438 * 8 6 5 10 10 C 1.50696 * 120.00126 * 179.97438 * 8 6 5 11 11 S 1.80996 * 109.47331 * 179.97438 * 10 8 6 12 12 C 1.76195 * 100.00382 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99865 * 0.02562 * 12 11 10 14 14 C 1.38794 * 120.00302 * 179.97438 * 12 11 10 15 15 N 1.31632 * 120.00173 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 120.00069 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.46851 * 60.00712 * 16 14 12 18 18 H 1.48502 * 109.47114 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47232 * 300.00510 * 16 14 12 20 20 C 1.46904 * 111.00005 * 123.95374 * 2 1 3 21 21 C 1.50700 * 109.47168 * 66.04867 * 20 2 1 22 22 N 1.30502 * 125.64425 * 270.27392 * 21 20 2 23 23 C 1.34127 * 109.25683 * 180.14781 * 22 21 20 24 24 C 1.34672 * 108.01948 * 359.61488 * 23 22 21 25 25 N 1.35041 * 125.65474 * 89.99517 * 21 20 2 26 26 C 1.46499 * 126.39624 * 0.02562 * 25 21 20 27 27 H 1.09002 * 109.46767 * 296.04371 * 1 2 3 28 28 H 1.08995 * 109.46791 * 56.04528 * 1 2 3 29 29 H 1.08996 * 109.47215 * 176.04890 * 1 2 3 30 30 H 1.09005 * 109.47278 * 53.95384 * 3 2 1 31 31 H 1.08998 * 109.47628 * 173.95310 * 3 2 1 32 32 H 1.09007 * 109.46933 * 299.99401 * 4 3 2 33 33 H 1.08998 * 109.47279 * 59.99334 * 4 3 2 34 34 H 1.08996 * 109.47371 * 299.99951 * 5 4 3 35 35 H 1.09003 * 109.47037 * 59.99960 * 5 4 3 36 36 H 1.09006 * 109.47298 * 90.00537 * 7 6 5 37 37 H 1.09003 * 109.47269 * 209.99688 * 7 6 5 38 38 H 1.08992 * 109.47401 * 330.00125 * 7 6 5 39 39 H 1.08997 * 109.47426 * 300.00092 * 10 8 6 40 40 H 1.09005 * 109.47079 * 60.00275 * 10 8 6 41 41 H 0.96996 * 120.00282 * 179.97438 * 15 14 12 42 42 H 1.08994 * 109.46963 * 306.04497 * 20 2 1 43 43 H 1.09006 * 109.46688 * 186.04292 * 20 2 1 44 44 H 1.08002 * 125.99481 * 179.88589 * 23 22 21 45 45 H 1.07997 * 126.59503 * 180.24939 * 24 23 22 46 46 H 1.09003 * 109.47221 * 270.01947 * 26 25 21 47 47 H 1.09003 * 109.47097 * 30.02049 * 26 25 21 48 48 H 1.09001 * 109.46668 * 150.02021 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1793 3.4860 -1.3180 6 7 1.8313 4.1427 -2.5806 7 6 0.5744 4.8861 -2.6972 8 6 2.6673 4.0628 -3.6346 9 8 3.7081 3.4476 -3.5379 10 6 2.3090 4.7378 -4.9334 11 16 3.6225 4.4505 -6.1451 12 6 2.9622 5.3243 -7.5253 13 1 2.0090 5.8250 -7.4416 14 6 3.6675 5.3701 -8.7198 15 7 4.8296 4.7603 -8.8218 16 14 2.9670 6.2960 -10.1833 17 1 2.7802 7.7243 -9.8220 18 1 3.9058 6.1935 -11.3293 19 1 1.6580 5.7059 -10.5619 20 6 1.9954 -0.7660 1.1376 21 6 1.6370 -2.2204 0.9729 22 7 0.5489 -2.7902 1.4139 23 6 0.5680 -4.0914 1.0890 24 6 1.7074 -4.3355 0.4138 25 7 2.3859 -3.1489 0.3399 26 6 3.6825 -2.9276 -0.3051 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0708 30 1 1.5612 1.9273 0.8309 31 1 3.0798 1.3443 0.1083 32 1 2.0658 1.5015 -2.1492 33 1 0.5472 2.0844 -1.4265 34 1 1.7447 4.0416 -0.4872 35 1 3.2636 3.4592 -1.2096 36 1 0.7393 5.9255 -2.4130 37 1 0.2210 4.8430 -3.7275 38 1 -0.1723 4.4433 -2.0382 39 1 1.3715 4.3281 -5.3094 40 1 2.1966 5.8092 -4.7672 41 1 5.3224 4.7920 -9.6567 42 1 1.5611 -0.3872 2.0628 43 1 3.0798 -0.6611 1.1756 44 1 -0.1982 -4.8155 1.3235 45 1 2.0247 -5.2848 0.0083 46 1 3.5273 -2.6544 -1.3488 47 1 4.2102 -2.1227 0.2066 48 1 4.2748 -3.8412 -0.2528 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755033244.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:21 Heat of formation + Delta-G solvation = 13.628982 kcal Electronic energy + Delta-G solvation = -26507.126124 eV Core-core repulsion = 22723.967390 eV Total energy + Delta-G solvation = -3783.158734 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -43.00855 -40.83894 -38.79443 -36.74324 -34.89806 -34.58311 -33.73284 -31.44428 -30.35304 -28.39002 -28.05699 -27.68813 -27.62183 -26.44514 -24.06371 -22.29062 -21.87596 -20.69830 -20.51684 -19.51677 -18.07817 -17.95488 -17.33223 -17.06995 -16.87711 -16.76514 -16.44544 -16.05200 -15.69906 -15.52750 -15.36807 -14.85051 -14.51145 -14.46856 -14.35120 -14.23802 -13.74509 -13.70774 -13.53202 -13.34461 -13.33811 -13.17005 -13.00640 -12.88829 -12.85405 -12.74522 -12.60417 -12.44533 -12.36875 -11.73911 -11.51103 -11.12757 -10.96889 -10.85547 -10.52130 -10.26880 -9.67201 -9.50204 -9.24471 -8.66911 -8.34286 -6.12589 1.06818 1.26741 1.43876 1.46451 1.56151 1.60728 1.93786 2.08661 2.18576 2.28347 2.99484 3.00942 3.27913 3.52381 3.73891 3.82310 3.96514 3.98410 4.10967 4.19165 4.23232 4.31734 4.35324 4.37598 4.45139 4.47513 4.49582 4.56964 4.60638 4.63038 4.65790 4.70089 4.73390 4.83294 4.85055 4.95033 5.04079 5.16784 5.27637 5.38317 5.41437 5.64204 5.84003 5.95085 6.00780 6.19612 6.27206 6.30563 7.06645 7.14734 7.18293 8.74670 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.016256 B = 0.001906 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.976003 B =14684.633797 C =15582.700163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.552 5.552 3 C 0.067 3.933 4 C -0.120 4.120 5 C 0.118 3.882 6 N -0.612 5.612 7 C 0.071 3.929 8 C 0.529 3.471 9 O -0.563 6.563 10 C -0.124 4.124 11 S -0.153 6.153 12 C -0.547 4.547 13 H 0.082 0.918 14 C 0.013 3.987 15 N -0.911 5.911 16 Si 0.998 3.002 17 H -0.261 1.261 18 H -0.279 1.279 19 H -0.262 1.262 20 C 0.142 3.858 21 C 0.197 3.803 22 N -0.522 5.522 23 C -0.057 4.057 24 C -0.053 4.053 25 N -0.452 5.452 26 C 0.068 3.932 27 H 0.036 0.964 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.112 0.888 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.271 0.729 42 H 0.068 0.932 43 H 0.105 0.895 44 H 0.182 0.818 45 H 0.203 0.797 46 H 0.075 0.925 47 H 0.097 0.903 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.513 -10.802 22.974 27.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.277 5.277 3 C -0.061 4.061 4 C -0.159 4.159 5 C -0.004 4.004 6 N -0.346 5.346 7 C -0.071 4.071 8 C 0.316 3.684 9 O -0.441 6.441 10 C -0.275 4.275 11 S 0.075 5.925 12 C -0.694 4.694 13 H 0.100 0.900 14 C -0.192 4.192 15 N -0.547 5.547 16 Si 0.820 3.180 17 H -0.186 1.186 18 H -0.204 1.204 19 H -0.187 1.187 20 C 0.013 3.987 21 C -0.066 4.066 22 N -0.242 5.242 23 C -0.205 4.205 24 C -0.187 4.187 25 N -0.133 5.133 26 C -0.073 4.073 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.130 0.870 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.123 0.877 44 H 0.200 0.800 45 H 0.220 0.780 46 H 0.093 0.907 47 H 0.115 0.885 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.159 -11.540 22.962 26.963 hybrid contribution -0.973 0.762 -1.021 1.603 sum -9.132 -10.778 21.941 26.096 Atomic orbital electron populations 1.22312 0.86685 1.01753 1.00756 1.61858 1.08918 1.14470 1.42453 1.21987 1.00707 0.86834 0.96553 1.21815 1.01371 0.95028 0.97644 1.21514 1.01187 0.92762 0.84978 1.47870 1.21622 1.53345 1.11718 1.22079 0.84242 0.96763 1.03993 1.20118 0.83359 0.79714 0.85165 1.90668 1.26346 1.43559 1.83570 1.23382 1.03938 1.04256 0.95968 1.85544 1.28196 1.71400 1.07391 1.23160 1.09214 1.38517 0.98542 0.89972 1.26136 0.94947 0.96372 1.01733 1.70177 1.14328 1.42418 1.27801 0.85010 0.78211 0.78693 0.76121 1.18583 1.20380 1.18687 1.20365 1.01225 0.83994 0.93096 1.23240 0.89806 0.94139 0.99428 1.70172 1.20639 1.08461 1.24962 1.22678 0.99819 0.93434 1.04599 1.23239 0.95998 0.91721 1.07790 1.45477 1.18547 1.08470 1.40852 1.22262 0.81189 1.05270 0.98599 0.94562 0.91194 0.92843 0.92231 0.89975 0.94274 0.90925 0.86951 0.91645 0.90941 0.91078 0.88195 0.87718 0.87590 0.91993 0.91359 0.87653 0.80048 0.77994 0.90657 0.88489 0.87418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.17 127.69 1.17 1.80 16 2 N -0.55 -10.21 4.75 -927.05 -4.41 -14.61 16 3 C 0.07 1.05 4.96 86.31 0.43 1.48 16 4 C -0.12 -2.40 5.47 30.60 0.17 -2.23 16 5 C 0.12 2.42 5.41 86.38 0.47 2.89 16 6 N -0.61 -15.71 2.87 -846.77 -2.43 -18.15 16 7 C 0.07 1.20 10.24 127.77 1.31 2.51 16 8 C 0.53 19.90 7.69 87.66 0.67 20.57 16 9 O -0.56 -26.17 15.44 -3.04 -0.05 -26.21 16 10 C -0.12 -5.02 4.71 71.23 0.34 -4.68 16 11 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 12 C -0.55 -31.34 9.50 67.95 0.65 -30.69 16 13 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 14 C 0.01 0.74 5.49 84.86 0.47 1.20 16 15 N -0.91 -56.09 13.22 21.65 0.29 -55.81 16 16 Si 1.00 43.55 29.55 68.60 2.03 45.58 16 17 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 18 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 20 C 0.14 2.35 5.27 85.56 0.45 2.80 16 21 C 0.20 4.08 6.54 138.13 0.90 4.98 16 22 N -0.52 -12.58 10.49 -188.13 -1.97 -14.56 16 23 C -0.06 -1.14 11.87 83.52 0.99 -0.15 16 24 C -0.05 -0.86 11.58 83.09 0.96 0.10 16 25 N -0.45 -7.83 3.15 -537.60 -1.69 -9.53 16 26 C 0.07 0.76 10.97 127.77 1.40 2.16 16 27 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 1.28 6.30 -2.39 -0.02 1.27 16 29 H 0.05 1.25 6.71 -2.39 -0.02 1.23 16 30 H 0.06 0.70 8.12 -2.38 -0.02 0.69 16 31 H 0.08 1.24 7.93 -2.39 -0.02 1.22 16 32 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.07 1.32 6.47 -2.39 -0.02 1.30 16 34 H 0.11 1.44 8.07 -2.39 -0.02 1.42 16 35 H 0.07 1.63 7.42 -2.39 -0.02 1.62 16 36 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.07 1.29 6.44 -2.39 -0.02 1.28 16 38 H 0.10 1.09 8.07 -2.39 -0.02 1.07 16 39 H 0.10 3.86 7.40 -2.40 -0.02 3.85 16 40 H 0.11 3.88 8.11 -2.39 -0.02 3.86 16 41 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 42 H 0.07 1.08 8.12 -2.39 -0.02 1.06 16 43 H 0.11 1.32 6.86 -2.38 -0.02 1.30 16 44 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 45 H 0.20 1.79 8.06 -2.91 -0.02 1.76 16 46 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.10 0.87 7.05 -2.39 -0.02 0.85 16 48 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -83.64 406.26 1.91 -81.73 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.94 Total: 18.52 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 10.37 Total: 2.74 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -10.22 Total: -112.65 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.05 Total: -26.21 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -83.64 1.91 -81.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755033244.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.361 kcal (2) G-P(sol) polarization free energy of solvation -83.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds