Wall clock time and date at job start Sat Apr 11 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37550 * 127.16491 * 2 1 4 4 C 1.47875 * 126.47375 * 0.02562 * 3 2 1 5 5 C 1.39960 * 120.01794 * 17.60411 * 4 3 2 6 6 C 1.38333 * 120.34772 * 179.71546 * 5 4 3 7 7 C 1.37752 * 120.40931 * 0.55851 * 6 5 4 8 8 C 1.40785 * 120.03339 * 359.72467 * 7 6 5 9 9 C 1.41428 * 120.17792 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00075 * 23.98710 * 9 8 7 11 11 C 1.39919 * 120.00417 * 204.00249 * 9 8 7 12 12 N 1.30842 * 119.99796 * 19.18743 * 11 9 8 13 13 Si 1.86796 * 120.00306 * 199.19612 * 11 9 8 14 14 H 1.48499 * 109.47401 * 89.99256 * 13 11 9 15 15 H 1.48505 * 109.47157 * 209.99520 * 13 11 9 16 16 H 1.48505 * 109.47056 * 329.99240 * 13 11 9 17 17 C 1.38963 * 120.02700 * 197.87790 * 4 3 2 18 18 N 1.31256 * 107.06137 * 180.24572 * 3 2 1 19 19 N 1.28522 * 109.93181 * 359.75956 * 18 3 2 20 20 C 1.31386 * 110.07422 * 0.02562 * 19 18 3 21 21 N 1.38398 * 126.36434 * 179.97438 * 20 19 18 22 22 C 1.47043 * 111.00677 * 36.75441 * 21 20 19 23 23 C 1.53673 * 108.88756 * 181.78875 * 22 21 20 24 24 H 1.08997 * 112.55165 * 186.66441 * 23 22 21 25 25 C 1.54712 * 107.84537 * 310.91308 * 23 22 21 26 26 C 1.54551 * 103.81849 * 88.33281 * 25 23 22 27 27 C 1.54711 * 103.82591 * 359.97438 * 26 25 23 28 28 H 1.09002 * 112.16448 * 147.18564 * 27 26 25 29 29 C 1.48350 * 110.82091 * 272.77182 * 21 20 19 30 30 O 1.44653 * 104.34065 * 25.53105 * 27 26 25 31 31 H 1.09005 * 109.47082 * 277.29962 * 1 2 3 32 32 H 1.09000 * 109.47123 * 37.29303 * 1 2 3 33 33 H 1.08996 * 109.47409 * 157.30051 * 1 2 3 34 34 H 1.07993 * 119.82545 * 359.97438 * 5 4 3 35 35 H 1.08006 * 119.79199 * 180.28193 * 6 5 4 36 36 H 1.07996 * 119.98366 * 179.69558 * 7 6 5 37 37 H 0.96997 * 120.00143 * 180.02562 * 12 11 9 38 38 H 1.08003 * 120.19439 * 0.02562 * 17 4 3 39 39 H 1.08999 * 109.57085 * 61.96690 * 22 21 20 40 40 H 1.08999 * 109.56842 * 301.61683 * 22 21 20 41 41 H 1.08997 * 110.55790 * 329.74917 * 25 23 22 42 42 H 1.09007 * 110.67978 * 206.97146 * 25 23 22 43 43 H 1.09005 * 110.55614 * 241.40954 * 26 25 23 44 44 H 1.09001 * 110.68468 * 118.64821 * 26 25 23 45 45 H 1.08999 * 110.36128 * 58.60493 * 29 21 20 46 46 H 1.08999 * 109.45527 * 297.81751 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2959 1.0961 0.0000 4 6 1.8794 2.5150 0.0005 5 6 0.5739 2.8613 0.3676 6 6 0.1787 4.1870 0.3762 7 6 1.0614 5.1801 0.0127 8 6 2.3768 4.8500 -0.3651 9 6 3.2854 5.8672 -0.7394 10 1 3.1402 6.8776 -0.3867 11 6 4.3724 5.5646 -1.5669 12 7 4.3592 4.4757 -2.2922 13 14 5.8425 6.7150 -1.6359 14 1 6.8337 6.3140 -0.6055 15 1 6.4679 6.6388 -2.9807 16 1 5.3944 8.1069 -1.3765 17 6 2.7820 3.5049 -0.3689 18 7 3.5285 0.6450 -0.0054 19 7 3.5247 -0.6402 -0.0036 20 6 2.2893 -1.0875 0.0024 21 7 1.8971 -2.4147 0.0055 22 6 2.8063 -3.2312 0.8235 23 6 2.3535 -4.6982 0.7567 24 1 2.9159 -5.3405 1.4343 25 6 0.8334 -4.7386 1.0413 26 6 0.1918 -4.5522 -0.3524 27 6 1.4051 -4.4219 -1.3034 28 1 1.2022 -4.8416 -2.2887 29 6 1.8057 -2.9407 -1.3787 30 8 2.4718 -5.1212 -0.6213 31 1 -0.3633 0.1306 1.0194 32 1 -0.3633 0.8176 -0.6227 33 1 -0.3634 -0.9480 -0.3966 34 1 -0.1273 2.0900 0.6497 35 1 -0.8295 4.4445 0.6653 36 1 0.7441 6.2124 0.0171 37 1 5.1128 4.2657 -2.8656 38 1 3.7889 3.2416 -0.6575 39 1 2.7762 -2.8865 1.8571 40 1 3.8219 -3.1445 0.4375 41 1 0.5467 -3.9243 1.7066 42 1 0.5472 -5.6997 1.4688 43 1 -0.4127 -3.6455 -0.3772 44 1 -0.4115 -5.4203 -0.6178 45 1 2.7670 -2.8476 -1.8840 46 1 1.0466 -2.3848 -1.9289 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772158742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:44 Heat of formation + Delta-G solvation = 77.206852 kcal Electronic energy + Delta-G solvation = -29659.044274 eV Core-core repulsion = 25743.198532 eV Total energy + Delta-G solvation = -3915.845742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.49297 -40.89411 -37.60384 -35.99529 -34.70554 -33.67262 -32.27885 -31.81618 -31.06037 -29.71304 -28.17723 -27.40624 -25.73773 -25.39100 -24.96512 -22.53781 -21.42793 -21.36610 -20.67180 -20.00204 -19.53227 -17.85346 -17.39735 -16.34839 -16.25450 -15.66352 -15.44378 -15.13908 -15.08143 -14.92550 -14.70295 -14.39540 -14.23648 -13.35592 -13.27499 -13.09494 -12.99188 -12.81165 -12.71446 -12.35592 -11.94441 -11.89784 -11.71029 -11.41921 -11.32879 -11.22313 -11.14988 -11.08876 -10.74131 -10.70957 -10.55570 -10.31819 -9.99696 -9.81321 -9.75468 -9.64302 -9.38085 -9.14689 -8.58602 -7.57725 -7.28868 -6.83781 -4.44506 1.74890 2.43033 2.67865 2.83288 3.07372 3.10491 3.14872 3.55254 3.59055 3.71938 3.90405 4.39964 4.45624 4.48203 4.54495 4.55316 4.82414 4.86028 4.97932 5.04882 5.11919 5.25446 5.28038 5.32381 5.41816 5.50995 5.55299 5.57557 5.61364 5.64397 5.71733 5.82572 5.89711 5.90873 6.11469 6.23351 6.28194 6.44541 6.57001 6.60880 6.87509 6.95804 7.06222 7.19185 7.36134 7.44384 7.66655 7.83814 7.92232 8.14069 8.46530 8.77881 8.79836 9.20333 10.10422 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019088 B = 0.002821 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.575565 B = 9923.511743 C =10880.674648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.469 5.469 3 C 0.266 3.734 4 C -0.023 4.023 5 C -0.241 4.241 6 C -0.089 4.089 7 C -0.218 4.218 8 C 0.105 3.895 9 C -0.457 4.457 10 H 0.082 0.918 11 C 0.075 3.925 12 N -0.781 5.781 13 Si 0.910 3.090 14 H -0.265 1.265 15 H -0.277 1.277 16 H -0.262 1.262 17 C -0.106 4.106 18 N -0.283 5.283 19 N -0.311 5.311 20 C 0.315 3.685 21 N -0.449 5.449 22 C 0.043 3.957 23 C 0.074 3.926 24 H 0.122 0.878 25 C -0.137 4.137 26 C -0.136 4.136 27 C 0.074 3.926 28 H 0.120 0.880 29 C 0.033 3.967 30 O -0.366 6.366 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.285 0.715 38 H 0.134 0.866 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.762 -16.250 2.913 18.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.162 5.162 3 C 0.003 3.997 4 C -0.026 4.026 5 C -0.262 4.262 6 C -0.108 4.108 7 C -0.238 4.238 8 C 0.103 3.897 9 C -0.486 4.486 10 H 0.100 0.900 11 C -0.144 4.144 12 N -0.405 5.405 13 Si 0.734 3.266 14 H -0.190 1.190 15 H -0.202 1.202 16 H -0.186 1.186 17 C -0.127 4.127 18 N -0.123 5.123 19 N -0.156 5.156 20 C -0.041 4.041 21 N -0.175 5.175 22 C -0.084 4.084 23 C 0.015 3.985 24 H 0.140 0.860 25 C -0.175 4.175 26 C -0.173 4.173 27 C 0.016 3.984 28 H 0.137 0.863 29 C -0.094 4.094 30 O -0.285 6.285 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.152 0.848 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.435 -16.618 2.825 18.423 hybrid contribution -0.271 0.671 -0.366 0.811 sum -7.706 -15.946 2.459 17.881 Atomic orbital electron populations 1.22147 0.75804 1.04352 1.03802 1.46112 1.08455 1.05742 1.55888 1.23434 0.85688 0.89532 1.01068 1.17321 0.95253 0.84623 1.05392 1.20468 0.95169 0.95915 1.14653 1.20373 0.97637 0.92749 1.00015 1.21088 0.94072 0.97402 1.11214 1.17547 0.91012 0.92212 0.88951 1.19601 1.06745 0.96521 1.25737 0.89970 1.25956 0.99356 0.95732 0.93386 1.69791 1.30288 1.23324 1.17055 0.86283 0.80933 0.80975 0.78436 1.19009 1.20235 1.18568 1.21510 0.99184 0.91450 1.00571 1.74459 1.16934 1.01409 1.19480 1.74534 1.16506 1.04700 1.19860 1.22093 0.86588 0.87474 1.07908 1.59229 1.49618 0.96139 1.12501 1.22790 0.95350 0.92086 0.98197 1.23508 0.96805 0.93496 0.84649 0.86034 1.22847 0.94410 1.02366 0.97902 1.22821 0.97545 1.02510 0.94468 1.23447 0.87104 0.90129 0.97693 0.86257 1.23199 1.02510 0.95829 0.87886 1.89290 1.51992 1.67317 1.19905 0.90362 0.88599 0.89719 0.88774 0.88855 0.88585 0.90402 0.84827 0.89319 0.91289 0.89851 0.91232 0.90001 0.91164 0.91938 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.05 9.38 59.85 0.56 1.61 16 2 N -0.47 -8.29 3.23 -122.06 -0.39 -8.69 16 3 C 0.27 5.87 7.70 -153.78 -1.18 4.68 16 4 C -0.02 -0.53 5.86 -105.04 -0.62 -1.15 16 5 C -0.24 -4.97 8.79 -38.90 -0.34 -5.31 16 6 C -0.09 -1.85 10.01 -39.72 -0.40 -2.25 16 7 C -0.22 -5.04 9.79 -38.80 -0.38 -5.42 16 8 C 0.11 2.73 5.57 -106.87 -0.60 2.13 16 9 C -0.46 -11.79 9.05 -37.74 -0.34 -12.13 16 10 H 0.08 2.02 7.92 -52.48 -0.42 1.60 16 11 C 0.08 1.87 5.11 -17.34 -0.09 1.79 16 12 N -0.78 -20.28 11.01 55.55 0.61 -19.66 16 13 Si 0.91 18.63 29.60 -169.99 -5.03 13.60 16 14 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 15 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 16 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 17 C -0.11 -2.75 8.35 -38.47 -0.32 -3.07 16 18 N -0.28 -6.73 11.98 32.59 0.39 -6.34 16 19 N -0.31 -6.59 11.54 30.31 0.35 -6.24 16 20 C 0.32 5.49 6.74 -318.92 -2.15 3.34 16 21 N -0.45 -5.91 3.70 -172.43 -0.64 -6.54 16 22 C 0.04 0.53 4.82 -3.40 -0.02 0.51 16 23 C 0.07 0.70 4.73 -25.48 -0.12 0.58 16 24 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 25 C -0.14 -1.11 6.24 -25.02 -0.16 -1.26 16 26 C -0.14 -1.06 6.24 -25.02 -0.16 -1.22 16 27 C 0.07 0.70 4.68 -25.51 -0.12 0.58 16 28 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 29 C 0.03 0.39 5.14 -2.70 -0.01 0.38 16 30 O -0.37 -4.18 11.24 -35.23 -0.40 -4.57 16 31 H 0.08 0.90 7.71 -51.93 -0.40 0.50 16 32 H 0.10 1.25 6.58 -51.93 -0.34 0.91 16 33 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 34 H 0.09 1.62 4.84 -52.49 -0.25 1.37 16 35 H 0.09 1.63 8.06 -52.48 -0.42 1.21 16 36 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 37 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 38 H 0.13 3.75 6.06 -52.48 -0.32 3.43 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 0.99 7.82 -51.93 -0.41 0.58 16 41 H 0.08 0.71 7.81 -51.93 -0.41 0.30 16 42 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 43 H 0.08 0.64 7.83 -51.93 -0.41 0.23 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 367.87 15.07 5.54 5.54 Total: -1.00 -30.46 367.87 -12.31 -42.77 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.31 Total: 6.33 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -6.44 Total: -16.20 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.32 Total: -47.47 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.40 Total: -4.57 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.46 -12.31 -42.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772158742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.979 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds