Wall clock time and date at job start Sat Apr 11 2020 06:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37550 * 127.16491 * 2 1 4 4 C 1.47875 * 126.47375 * 0.02562 * 3 2 1 5 5 C 1.39960 * 120.01794 * 17.60411 * 4 3 2 6 6 C 1.38333 * 120.34772 * 179.71546 * 5 4 3 7 7 C 1.37752 * 120.40931 * 0.55851 * 6 5 4 8 8 C 1.40785 * 120.03339 * 359.72467 * 7 6 5 9 9 C 1.41428 * 120.17792 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00075 * 23.98710 * 9 8 7 11 11 C 1.39919 * 120.00417 * 204.00249 * 9 8 7 12 12 N 1.30842 * 119.99796 * 19.18743 * 11 9 8 13 13 Si 1.86796 * 120.00306 * 199.19612 * 11 9 8 14 14 H 1.48499 * 109.47401 * 89.99256 * 13 11 9 15 15 H 1.48505 * 109.47157 * 209.99520 * 13 11 9 16 16 H 1.48505 * 109.47056 * 329.99240 * 13 11 9 17 17 C 1.38963 * 120.02700 * 197.87790 * 4 3 2 18 18 N 1.31256 * 107.06137 * 180.24572 * 3 2 1 19 19 N 1.28522 * 109.93181 * 359.75956 * 18 3 2 20 20 C 1.31386 * 110.07422 * 0.02562 * 19 18 3 21 21 N 1.38398 * 126.36434 * 179.97438 * 20 19 18 22 22 C 1.47043 * 111.00677 * 36.75441 * 21 20 19 23 23 C 1.53673 * 108.88756 * 181.78875 * 22 21 20 24 24 H 1.08997 * 112.55165 * 186.66441 * 23 22 21 25 25 C 1.54712 * 107.84537 * 310.91308 * 23 22 21 26 26 C 1.54551 * 103.81849 * 88.33281 * 25 23 22 27 27 C 1.54711 * 103.82591 * 359.97438 * 26 25 23 28 28 H 1.09002 * 112.16448 * 147.18564 * 27 26 25 29 29 C 1.48350 * 110.82091 * 272.77182 * 21 20 19 30 30 O 1.44653 * 104.34065 * 25.53105 * 27 26 25 31 31 H 1.09005 * 109.47082 * 277.29962 * 1 2 3 32 32 H 1.09000 * 109.47123 * 37.29303 * 1 2 3 33 33 H 1.08996 * 109.47409 * 157.30051 * 1 2 3 34 34 H 1.07993 * 119.82545 * 359.97438 * 5 4 3 35 35 H 1.08006 * 119.79199 * 180.28193 * 6 5 4 36 36 H 1.07996 * 119.98366 * 179.69558 * 7 6 5 37 37 H 0.96997 * 120.00143 * 180.02562 * 12 11 9 38 38 H 1.08003 * 120.19439 * 0.02562 * 17 4 3 39 39 H 1.08999 * 109.57085 * 61.96690 * 22 21 20 40 40 H 1.08999 * 109.56842 * 301.61683 * 22 21 20 41 41 H 1.08997 * 110.55790 * 329.74917 * 25 23 22 42 42 H 1.09007 * 110.67978 * 206.97146 * 25 23 22 43 43 H 1.09005 * 110.55614 * 241.40954 * 26 25 23 44 44 H 1.09001 * 110.68468 * 118.64821 * 26 25 23 45 45 H 1.08999 * 110.36128 * 58.60493 * 29 21 20 46 46 H 1.08999 * 109.45527 * 297.81751 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2959 1.0961 0.0000 4 6 1.8794 2.5150 0.0005 5 6 0.5739 2.8613 0.3676 6 6 0.1787 4.1870 0.3762 7 6 1.0614 5.1801 0.0127 8 6 2.3768 4.8500 -0.3651 9 6 3.2854 5.8672 -0.7394 10 1 3.1402 6.8776 -0.3867 11 6 4.3724 5.5646 -1.5669 12 7 4.3592 4.4757 -2.2922 13 14 5.8425 6.7150 -1.6359 14 1 6.8337 6.3140 -0.6055 15 1 6.4679 6.6388 -2.9807 16 1 5.3944 8.1069 -1.3765 17 6 2.7820 3.5049 -0.3689 18 7 3.5285 0.6450 -0.0054 19 7 3.5247 -0.6402 -0.0036 20 6 2.2893 -1.0875 0.0024 21 7 1.8971 -2.4147 0.0055 22 6 2.8063 -3.2312 0.8235 23 6 2.3535 -4.6982 0.7567 24 1 2.9159 -5.3405 1.4343 25 6 0.8334 -4.7386 1.0413 26 6 0.1918 -4.5522 -0.3524 27 6 1.4051 -4.4219 -1.3034 28 1 1.2022 -4.8416 -2.2887 29 6 1.8057 -2.9407 -1.3787 30 8 2.4718 -5.1212 -0.6213 31 1 -0.3633 0.1306 1.0194 32 1 -0.3633 0.8176 -0.6227 33 1 -0.3634 -0.9480 -0.3966 34 1 -0.1273 2.0900 0.6497 35 1 -0.8295 4.4445 0.6653 36 1 0.7441 6.2124 0.0171 37 1 5.1128 4.2657 -2.8656 38 1 3.7889 3.2416 -0.6575 39 1 2.7762 -2.8865 1.8571 40 1 3.8219 -3.1445 0.4375 41 1 0.5467 -3.9243 1.7066 42 1 0.5472 -5.6997 1.4688 43 1 -0.4127 -3.6455 -0.3772 44 1 -0.4115 -5.4203 -0.6178 45 1 2.7670 -2.8476 -1.8840 46 1 1.0466 -2.3848 -1.9289 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772158742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:43 Heat of formation + Delta-G solvation = 61.310865 kcal Electronic energy + Delta-G solvation = -29659.733576 eV Core-core repulsion = 25743.198532 eV Total energy + Delta-G solvation = -3916.535044 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.99006 -41.77875 -39.37387 -37.11335 -36.19713 -35.41371 -33.13758 -32.66115 -32.57635 -31.51469 -29.66326 -28.67026 -27.23916 -26.83662 -25.83887 -24.20571 -22.96632 -22.13673 -22.04342 -21.55851 -20.59166 -19.30802 -18.79677 -17.60934 -17.49169 -17.30624 -16.65729 -16.51998 -16.28205 -16.10991 -15.77887 -15.69845 -15.27338 -15.10334 -14.53542 -14.37687 -14.25527 -13.92033 -13.84339 -13.78044 -13.46013 -13.04610 -12.87287 -12.82399 -12.69435 -12.58597 -12.48364 -12.25185 -12.10457 -11.92043 -11.79450 -11.53713 -11.40546 -11.39570 -11.18883 -11.09942 -10.87844 -10.70512 -9.96180 -9.40757 -9.03246 -8.66832 -6.37292 0.13343 0.96908 1.05373 1.20343 1.36442 1.48919 1.50127 1.89390 2.18474 2.51573 2.72945 2.85584 3.38439 3.59321 3.66995 3.68958 3.74406 3.75848 3.78804 3.96668 4.07543 4.12931 4.29334 4.35174 4.35891 4.44746 4.52674 4.56644 4.58828 4.64746 4.72947 4.78885 4.84689 4.87433 5.00523 5.09118 5.10774 5.19263 5.24345 5.29260 5.35118 5.37066 5.44589 5.57314 5.78653 5.87620 6.01055 6.07198 6.10203 6.30906 6.60227 6.89132 6.95138 7.63036 8.28562 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019088 B = 0.002821 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.575565 B = 9923.511743 C =10880.674648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.461 5.461 3 C 0.244 3.756 4 C -0.027 4.027 5 C -0.221 4.221 6 C -0.086 4.086 7 C -0.224 4.224 8 C 0.075 3.925 9 C -0.495 4.495 10 H 0.084 0.916 11 C 0.034 3.966 12 N -0.821 5.821 13 Si 0.978 3.022 14 H -0.268 1.268 15 H -0.270 1.270 16 H -0.250 1.250 17 C -0.142 4.142 18 N -0.327 5.327 19 N -0.352 5.352 20 C 0.339 3.661 21 N -0.430 5.430 22 C 0.040 3.960 23 C 0.077 3.923 24 H 0.142 0.858 25 C -0.133 4.133 26 C -0.131 4.131 27 C 0.077 3.923 28 H 0.142 0.858 29 C 0.030 3.970 30 O -0.387 6.387 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.108 0.892 37 H 0.286 0.714 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.039 0.961 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.033 0.967 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.271 -18.146 3.800 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.153 5.153 3 C -0.022 4.022 4 C -0.030 4.030 5 C -0.242 4.242 6 C -0.103 4.103 7 C -0.244 4.244 8 C 0.073 3.927 9 C -0.524 4.524 10 H 0.102 0.898 11 C -0.182 4.182 12 N -0.446 5.446 13 Si 0.799 3.201 14 H -0.193 1.193 15 H -0.195 1.195 16 H -0.173 1.173 17 C -0.164 4.164 18 N -0.167 5.167 19 N -0.197 5.197 20 C -0.018 4.018 21 N -0.157 5.157 22 C -0.087 4.087 23 C 0.019 3.981 24 H 0.159 0.841 25 C -0.171 4.171 26 C -0.169 4.169 27 C 0.019 3.981 28 H 0.159 0.841 29 C -0.097 4.097 30 O -0.306 6.306 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.136 0.864 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.058 0.942 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.052 0.948 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.984 -18.517 3.716 21.848 hybrid contribution 0.645 1.047 -0.580 1.360 sum -10.338 -17.470 3.136 20.541 Atomic orbital electron populations 1.22590 0.72585 1.06407 1.05565 1.46279 1.10093 1.04251 1.54634 1.23210 0.86174 0.90104 1.02673 1.17539 0.96024 0.84869 1.04606 1.20973 0.94346 0.97219 1.11658 1.20857 0.99174 0.92028 0.98284 1.21381 0.93472 0.98929 1.10664 1.17885 0.92550 0.92318 0.89967 1.19852 1.08464 0.96806 1.27247 0.89779 1.26786 1.01704 0.97146 0.92559 1.69887 1.31124 1.25344 1.18251 0.85255 0.77149 0.79283 0.78404 1.19326 1.19476 1.17282 1.21294 0.98700 0.92645 1.03739 1.74349 1.18899 1.02856 1.20574 1.74451 1.19009 1.03875 1.22346 1.22569 0.85738 0.89099 1.04358 1.59555 1.48715 0.93915 1.13490 1.22897 0.93891 0.94152 0.97781 1.23653 0.98597 0.91357 0.84499 0.84059 1.22855 0.92586 1.03466 0.98188 1.22847 0.96766 1.03745 0.93506 1.23638 0.87386 0.87782 0.99318 0.84058 1.23341 1.01528 0.98227 0.86582 1.89288 1.53036 1.67385 1.20842 0.88062 0.88486 0.86393 0.84521 0.84239 0.87369 0.90403 0.88220 0.89200 0.94217 0.90006 0.89246 0.89502 0.89093 0.94844 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.50 9.38 127.77 1.20 2.70 16 2 N -0.46 -15.72 3.23 -540.09 -1.75 -17.46 16 3 C 0.24 10.98 7.70 136.23 1.05 12.03 16 4 C -0.03 -1.29 5.86 -20.13 -0.12 -1.41 16 5 C -0.22 -8.60 8.79 22.71 0.20 -8.40 16 6 C -0.09 -3.30 10.01 22.18 0.22 -3.08 16 7 C -0.22 -10.31 9.79 22.78 0.22 -10.09 16 8 C 0.08 4.04 5.57 -21.32 -0.12 3.92 16 9 C -0.49 -26.79 9.05 23.46 0.21 -26.58 16 10 H 0.08 4.31 7.92 -2.91 -0.02 4.28 16 11 C 0.03 1.75 5.11 85.25 0.44 2.19 16 12 N -0.82 -45.60 11.01 21.82 0.24 -45.36 16 13 Si 0.98 39.98 29.60 68.60 2.03 42.01 16 14 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 15 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 16 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 17 C -0.14 -7.80 8.35 22.99 0.19 -7.61 16 18 N -0.33 -16.42 11.98 -50.79 -0.61 -17.03 16 19 N -0.35 -15.59 11.54 -58.03 -0.67 -16.26 16 20 C 0.34 11.75 6.74 260.13 1.75 13.51 16 21 N -0.43 -10.72 3.70 -699.43 -2.59 -13.31 16 22 C 0.04 0.96 4.82 86.50 0.42 1.38 16 23 C 0.08 1.30 4.73 31.40 0.15 1.45 16 24 H 0.14 1.81 8.14 -2.39 -0.02 1.80 16 25 C -0.13 -1.63 6.24 31.71 0.20 -1.43 16 26 C -0.13 -1.49 6.24 31.71 0.20 -1.29 16 27 C 0.08 1.23 4.68 31.39 0.15 1.37 16 28 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 29 C 0.03 0.67 5.14 86.23 0.44 1.11 16 30 O -0.39 -8.03 11.24 -148.98 -1.68 -9.71 16 31 H 0.10 1.80 7.71 -2.38 -0.02 1.78 16 32 H 0.10 2.14 6.58 -2.39 -0.02 2.13 16 33 H 0.12 1.80 8.07 -2.39 -0.02 1.78 16 34 H 0.14 4.08 4.84 -2.91 -0.01 4.07 16 35 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 36 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 37 H 0.29 14.71 8.30 -92.71 -0.77 13.95 16 38 H 0.10 6.10 6.06 -2.91 -0.02 6.08 16 39 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.04 1.18 7.82 -2.39 -0.02 1.16 16 41 H 0.08 1.06 7.81 -2.39 -0.02 1.05 16 42 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.09 0.94 7.83 -2.38 -0.02 0.92 16 44 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -73.43 367.87 2.79 -70.64 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 1.00 Total: 26.71 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 6.80 Total: -20.24 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -5.37 Total: -109.42 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -1.68 Total: -9.71 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -73.43 2.79 -70.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772158742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.955 kcal (2) G-P(sol) polarization free energy of solvation -73.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds