Wall clock time and date at job start Sat Apr 11 2020 06:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34221 * 117.00055 * 2 1 4 4 O 1.20825 * 120.00286 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00204 * 180.02562 * 3 2 1 6 6 F 1.39894 * 110.78755 * 56.78758 * 5 3 2 7 7 C 1.54598 * 110.71930 * 293.54038 * 5 3 2 8 8 C 1.53987 * 105.14225 * 219.68398 * 7 5 3 9 9 N 1.47898 * 107.05796 * 358.77684 * 8 7 5 10 10 C 1.38588 * 111.00239 * 145.84266 * 9 8 7 11 11 N 1.31218 * 126.47077 * 323.94569 * 10 9 8 12 12 N 1.28523 * 109.86223 * 179.97438 * 11 10 9 13 13 C 1.30294 * 110.05196 * 359.97438 * 12 11 10 14 14 C 1.50703 * 126.34915 * 179.97438 * 13 12 11 15 15 H 1.08999 * 109.47394 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47243 * 300.02409 * 14 13 12 17 17 C 1.52997 * 109.46797 * 60.02747 * 14 13 12 18 18 C 1.50703 * 109.47293 * 174.99984 * 17 14 13 19 19 H 1.07999 * 119.99360 * 359.97438 * 18 17 14 20 20 C 1.37873 * 120.00301 * 179.97438 * 18 17 14 21 21 N 1.31514 * 119.99986 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47119 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47282 * 120.00012 * 22 20 18 25 25 H 1.48499 * 109.46665 * 240.00037 * 22 20 18 26 26 N 1.36446 * 126.47555 * 143.62455 * 10 9 8 27 27 C 1.46502 * 127.13670 * 0.04416 * 26 10 9 28 28 C 1.48537 * 105.82085 * 25.33011 * 9 8 7 29 29 H 1.09006 * 109.47077 * 60.00086 * 1 2 3 30 30 H 1.09002 * 109.46878 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47407 * 299.99807 * 1 2 3 32 32 H 1.09004 * 110.30606 * 100.76722 * 7 5 3 33 33 H 1.09003 * 110.31260 * 338.60514 * 7 5 3 34 34 H 1.08995 * 109.91963 * 118.13090 * 8 7 5 35 35 H 1.09000 * 109.91856 * 239.22667 * 8 7 5 36 36 H 1.09002 * 109.46770 * 59.99859 * 16 14 13 37 37 H 1.08998 * 109.47060 * 179.97438 * 16 14 13 38 38 H 1.08993 * 109.47318 * 300.00228 * 16 14 13 39 39 H 1.09004 * 109.47185 * 295.00013 * 17 14 13 40 40 H 1.09003 * 109.47405 * 55.00036 * 17 14 13 41 41 H 0.96996 * 120.00221 * 179.97438 * 21 20 18 42 42 H 1.08999 * 109.47577 * 95.17649 * 27 26 10 43 43 H 1.09001 * 109.47044 * 215.18010 * 27 26 10 44 44 H 1.09000 * 109.47040 * 335.17845 * 27 26 10 45 45 H 1.09002 * 110.66349 * 79.22359 * 28 9 8 46 46 H 1.08995 * 110.66748 * 202.35399 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 9 4.0992 0.5856 -1.0952 7 6 4.1433 0.7265 1.3247 8 6 5.3078 1.6702 1.6774 9 7 5.3976 2.6723 0.5935 10 6 5.7956 3.9044 1.0878 11 7 5.4638 4.4242 2.2461 12 7 6.0113 5.5793 2.3792 13 6 6.7194 5.8625 1.3228 14 6 7.5141 7.1219 1.0915 15 1 8.0000 7.0711 0.1171 16 6 6.5772 8.3308 1.1316 17 6 8.5758 7.2629 2.1840 18 6 9.4491 8.4542 1.8852 19 1 9.2654 9.0507 1.0039 20 6 10.4825 8.7824 2.7369 21 7 10.7058 8.0562 3.8104 22 14 11.5645 10.2595 2.3668 23 1 11.1081 10.9049 1.1097 24 1 11.4730 11.2327 3.4848 25 1 12.9728 9.8149 2.2115 26 7 6.6112 4.8034 0.4647 27 6 7.2382 4.6643 -0.8520 28 6 4.0380 2.7506 0.0006 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.5094 -0.2908 1.1857 33 1 3.3848 0.7526 2.1072 34 1 5.1087 2.1670 2.6269 35 1 6.2374 1.1047 1.7423 36 1 6.0913 8.3816 2.1060 37 1 7.1521 9.2417 0.9647 38 1 5.8209 8.2303 0.3533 39 1 8.0881 7.4028 3.1488 40 1 9.1884 6.3617 2.2139 41 1 11.4330 8.2869 4.4094 42 1 6.6173 5.1518 -1.6036 43 1 8.2233 5.1306 -0.8364 44 1 7.3407 3.6068 -1.0957 45 1 3.3830 3.3633 0.6201 46 1 4.0835 3.1409 -1.0160 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772173065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:56 Heat of formation + Delta-G solvation = -38.229163 kcal Electronic energy + Delta-G solvation = -30136.531983 eV Core-core repulsion = 25784.911335 eV Total energy + Delta-G solvation = -4351.620648 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.37536 -42.72058 -41.05453 -38.88536 -37.06161 -35.39385 -34.59628 -32.71361 -31.96115 -29.74016 -28.77298 -27.93028 -27.29689 -26.93972 -24.30701 -24.03945 -22.94505 -21.85798 -20.91906 -20.69366 -19.20694 -18.67759 -17.76409 -17.34193 -16.87581 -16.50889 -16.25093 -16.16400 -15.45548 -15.34724 -15.04234 -14.72796 -14.51418 -14.16192 -13.73647 -13.64371 -13.50074 -13.27567 -13.11914 -13.06325 -12.70626 -12.57861 -12.36866 -12.25517 -11.84291 -11.78286 -11.59725 -11.36442 -11.35821 -11.10347 -10.94545 -10.87582 -10.77213 -10.51120 -10.43024 -9.98155 -9.89126 -9.68671 -9.14514 -9.11755 -8.41269 -8.36125 -6.02058 -4.05805 1.41404 1.74701 2.01714 2.42822 3.17000 3.29701 3.36271 3.37649 3.40247 3.66083 3.66441 3.88338 4.21405 4.42402 4.58468 4.61026 4.70358 4.73444 4.77742 4.90213 5.03333 5.09466 5.15387 5.18123 5.23775 5.33272 5.37174 5.41541 5.48768 5.58266 5.68758 5.75988 5.97645 6.02388 6.09368 6.20404 6.26038 6.65725 6.71713 6.85641 7.00129 7.01210 7.29714 7.60257 7.76166 7.96800 8.32706 8.99827 9.08302 9.57959 11.09005 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.029295 B = 0.002225 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.574875 B =12579.031255 C =12672.271200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.346 6.346 3 C 0.457 3.543 4 O -0.479 6.479 5 C 0.135 3.865 6 F -0.167 7.167 7 C -0.141 4.141 8 C 0.044 3.956 9 N -0.434 5.434 10 C 0.306 3.694 11 N -0.309 5.309 12 N -0.283 5.283 13 C 0.223 3.777 14 C -0.004 4.004 15 H 0.074 0.926 16 C -0.126 4.126 17 C 0.038 3.962 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.892 3.108 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.285 1.285 26 N -0.469 5.469 27 C 0.077 3.923 28 C 0.040 3.960 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.031 0.969 39 H 0.032 0.968 40 H 0.014 0.986 41 H 0.261 0.739 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.745 -17.987 -10.923 26.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.262 6.262 3 C 0.296 3.704 4 O -0.364 6.364 5 C 0.114 3.886 6 F -0.147 7.147 7 C -0.180 4.180 8 C -0.083 4.083 9 N -0.159 5.159 10 C -0.051 4.051 11 N -0.154 5.154 12 N -0.122 5.122 13 C -0.044 4.044 14 C -0.025 4.025 15 H 0.092 0.908 16 C -0.184 4.184 17 C 0.000 4.000 18 C -0.559 4.559 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.529 5.529 22 Si 0.720 3.280 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.211 1.211 26 N -0.161 5.161 27 C -0.066 4.066 28 C -0.087 4.087 29 H 0.085 0.915 30 H 0.125 0.875 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.032 0.968 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.091 -17.743 -9.848 26.532 hybrid contribution 0.610 0.656 -1.051 1.381 sum -16.482 -17.087 -10.900 26.123 Atomic orbital electron populations 1.23415 0.75352 1.04311 1.03024 1.86541 1.24133 1.32193 1.83303 1.23571 0.91139 0.82275 0.73392 1.90749 1.66192 1.36160 1.43329 1.21362 0.85673 0.94231 0.87314 1.92983 1.86524 1.80442 1.54737 1.23100 0.98876 1.01874 0.94126 1.22983 0.99206 0.91970 0.94117 1.61416 1.24142 1.01694 1.28683 1.22125 0.98975 0.91777 0.92177 1.74445 1.21479 1.04814 1.14619 1.74058 1.11165 1.07069 1.19883 1.25752 0.99921 0.92068 0.86666 1.20046 0.94756 0.85109 1.02554 0.90752 1.21675 0.97760 0.97743 1.01216 1.19121 0.91128 0.97110 0.92658 1.21168 1.13668 1.12051 1.08968 0.92237 1.25011 0.97532 0.96726 0.95063 1.69988 1.30822 1.38983 1.13059 0.86539 0.80357 0.82793 0.78312 1.19691 1.20974 1.21111 1.46196 1.37023 1.15416 1.17498 1.22050 0.99218 1.04718 0.80592 1.23753 0.88905 0.92647 1.03431 0.91486 0.87486 0.91376 0.87345 0.88489 0.89419 0.88290 0.92016 0.90540 0.94951 0.94916 0.96755 0.92957 0.90563 0.88747 0.88709 0.88844 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.25 16 2 O -0.35 -2.98 10.56 -39.23 -0.41 -3.39 16 3 C 0.46 4.66 6.91 36.01 0.25 4.91 16 4 O -0.48 -5.97 15.47 -18.75 -0.29 -6.26 16 5 C 0.13 1.32 1.64 -89.91 -0.15 1.17 16 6 F -0.17 -1.73 16.96 2.25 0.04 -1.70 16 7 C -0.14 -1.14 6.31 -25.38 -0.16 -1.30 16 8 C 0.04 0.47 6.63 -2.76 -0.02 0.46 16 9 N -0.43 -5.52 5.28 -170.56 -0.90 -6.42 16 10 C 0.31 5.00 6.69 -318.87 -2.13 2.87 16 11 N -0.31 -6.01 11.06 30.32 0.34 -5.67 16 12 N -0.28 -6.13 12.18 32.99 0.40 -5.73 16 13 C 0.22 4.39 6.58 -154.01 -1.01 3.37 16 14 C 0.00 -0.07 2.71 -91.77 -0.25 -0.32 16 15 H 0.07 1.36 7.08 -51.93 -0.37 0.99 16 16 C -0.13 -2.35 8.99 37.16 0.33 -2.02 16 17 C 0.04 0.96 4.43 -27.88 -0.12 0.84 16 18 C -0.52 -13.97 8.41 -34.44 -0.29 -14.26 16 19 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 22 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 N -0.47 -7.68 3.21 -121.46 -0.39 -8.07 16 27 C 0.08 0.90 10.81 59.85 0.65 1.55 16 28 C 0.04 0.46 5.37 -1.90 -0.01 0.45 16 29 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 30 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 32 H 0.11 0.68 8.12 -51.93 -0.42 0.26 16 33 H 0.10 0.68 7.84 -51.93 -0.41 0.27 16 34 H 0.09 1.09 6.91 -51.93 -0.36 0.73 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.08 1.44 6.95 -51.93 -0.36 1.08 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.09 1.08 7.48 -51.93 -0.39 0.69 16 44 H 0.09 0.96 8.11 -51.93 -0.42 0.54 16 45 H 0.09 1.22 7.29 -51.93 -0.38 0.84 16 46 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 386.92 15.07 5.83 5.83 Total: -1.00 -34.34 386.92 -8.46 -42.80 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.84 Total: -2.20 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -1.95 Total: 0.51 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.18 Total: -51.65 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.70 Total: -9.65 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.34 -8.46 -42.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772173065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.572 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds