Wall clock time and date at job start Sat Apr 11 2020 06:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34221 * 117.00055 * 2 1 4 4 O 1.20825 * 120.00286 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00204 * 180.02562 * 3 2 1 6 6 F 1.39894 * 110.78755 * 56.78758 * 5 3 2 7 7 C 1.54598 * 110.71930 * 293.54038 * 5 3 2 8 8 C 1.53987 * 105.14225 * 219.68398 * 7 5 3 9 9 N 1.47898 * 107.05796 * 358.77684 * 8 7 5 10 10 C 1.38588 * 111.00239 * 145.84266 * 9 8 7 11 11 N 1.31218 * 126.47077 * 323.94569 * 10 9 8 12 12 N 1.28523 * 109.86223 * 179.97438 * 11 10 9 13 13 C 1.30294 * 110.05196 * 359.97438 * 12 11 10 14 14 C 1.50703 * 126.34915 * 179.97438 * 13 12 11 15 15 H 1.08999 * 109.47394 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47243 * 300.02409 * 14 13 12 17 17 C 1.52997 * 109.46797 * 60.02747 * 14 13 12 18 18 C 1.50703 * 109.47293 * 174.99984 * 17 14 13 19 19 H 1.07999 * 119.99360 * 359.97438 * 18 17 14 20 20 C 1.37873 * 120.00301 * 179.97438 * 18 17 14 21 21 N 1.31514 * 119.99986 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47119 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47282 * 120.00012 * 22 20 18 25 25 H 1.48499 * 109.46665 * 240.00037 * 22 20 18 26 26 N 1.36446 * 126.47555 * 143.62455 * 10 9 8 27 27 C 1.46502 * 127.13670 * 0.04416 * 26 10 9 28 28 C 1.48537 * 105.82085 * 25.33011 * 9 8 7 29 29 H 1.09006 * 109.47077 * 60.00086 * 1 2 3 30 30 H 1.09002 * 109.46878 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47407 * 299.99807 * 1 2 3 32 32 H 1.09004 * 110.30606 * 100.76722 * 7 5 3 33 33 H 1.09003 * 110.31260 * 338.60514 * 7 5 3 34 34 H 1.08995 * 109.91963 * 118.13090 * 8 7 5 35 35 H 1.09000 * 109.91856 * 239.22667 * 8 7 5 36 36 H 1.09002 * 109.46770 * 59.99859 * 16 14 13 37 37 H 1.08998 * 109.47060 * 179.97438 * 16 14 13 38 38 H 1.08993 * 109.47318 * 300.00228 * 16 14 13 39 39 H 1.09004 * 109.47185 * 295.00013 * 17 14 13 40 40 H 1.09003 * 109.47405 * 55.00036 * 17 14 13 41 41 H 0.96996 * 120.00221 * 179.97438 * 21 20 18 42 42 H 1.08999 * 109.47577 * 95.17649 * 27 26 10 43 43 H 1.09001 * 109.47044 * 215.18010 * 27 26 10 44 44 H 1.09000 * 109.47040 * 335.17845 * 27 26 10 45 45 H 1.09002 * 110.66349 * 79.22359 * 28 9 8 46 46 H 1.08995 * 110.66748 * 202.35399 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 9 4.0992 0.5856 -1.0952 7 6 4.1433 0.7265 1.3247 8 6 5.3078 1.6702 1.6774 9 7 5.3976 2.6723 0.5935 10 6 5.7956 3.9044 1.0878 11 7 5.4638 4.4242 2.2461 12 7 6.0113 5.5793 2.3792 13 6 6.7194 5.8625 1.3228 14 6 7.5141 7.1219 1.0915 15 1 8.0000 7.0711 0.1171 16 6 6.5772 8.3308 1.1316 17 6 8.5758 7.2629 2.1840 18 6 9.4491 8.4542 1.8852 19 1 9.2654 9.0507 1.0039 20 6 10.4825 8.7824 2.7369 21 7 10.7058 8.0562 3.8104 22 14 11.5645 10.2595 2.3668 23 1 11.1081 10.9049 1.1097 24 1 11.4730 11.2327 3.4848 25 1 12.9728 9.8149 2.2115 26 7 6.6112 4.8034 0.4647 27 6 7.2382 4.6643 -0.8520 28 6 4.0380 2.7506 0.0006 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.5094 -0.2908 1.1857 33 1 3.3848 0.7526 2.1072 34 1 5.1087 2.1670 2.6269 35 1 6.2374 1.1047 1.7423 36 1 6.0913 8.3816 2.1060 37 1 7.1521 9.2417 0.9647 38 1 5.8209 8.2303 0.3533 39 1 8.0881 7.4028 3.1488 40 1 9.1884 6.3617 2.2139 41 1 11.4330 8.2869 4.4094 42 1 6.6173 5.1518 -1.6036 43 1 8.2233 5.1306 -0.8364 44 1 7.3407 3.6068 -1.0957 45 1 3.3830 3.3633 0.6201 46 1 4.0835 3.1409 -1.0160 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772173065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:54 Heat of formation + Delta-G solvation = -58.231523 kcal Electronic energy + Delta-G solvation = -30137.399350 eV Core-core repulsion = 25784.911335 eV Total energy + Delta-G solvation = -4352.488015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -49.17532 -44.10446 -41.82897 -39.83304 -37.82896 -37.08705 -35.92245 -34.38787 -33.29779 -30.57419 -30.02725 -28.96147 -28.60205 -28.32760 -25.93488 -25.08660 -24.09403 -23.34477 -21.88780 -21.69129 -20.69350 -19.54069 -18.65836 -18.57339 -18.15305 -17.76602 -17.46859 -17.21442 -16.53168 -16.42807 -16.20831 -15.92367 -15.62813 -15.47198 -14.99068 -14.62773 -14.45576 -14.40226 -14.33677 -14.04155 -13.87092 -13.78256 -13.53678 -13.22667 -12.99809 -12.97122 -12.80186 -12.78164 -12.63050 -12.41746 -12.32524 -12.24064 -12.01916 -11.97564 -11.69657 -11.60711 -11.48717 -11.16405 -11.10568 -10.55105 -10.42087 -9.78810 -8.15782 -6.27220 0.57146 0.64678 1.01355 1.34232 1.44474 1.45545 1.58066 1.70896 2.43963 2.50206 2.63388 2.88652 3.13709 3.18539 3.37853 3.49581 3.72990 3.79900 3.92019 3.95294 4.08256 4.21224 4.27515 4.31756 4.32850 4.41221 4.43873 4.46553 4.55140 4.60697 4.67161 4.67616 4.78279 4.86343 4.97088 5.02155 5.08947 5.14924 5.16639 5.33153 5.43901 5.46676 5.69362 5.84395 6.04732 6.21014 6.26914 6.88879 7.41972 7.64713 8.96863 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.029295 B = 0.002225 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.574875 B =12579.031255 C =12672.271200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.346 6.346 3 C 0.462 3.538 4 O -0.507 6.507 5 C 0.141 3.859 6 F -0.167 7.167 7 C -0.130 4.130 8 C 0.039 3.961 9 N -0.428 5.428 10 C 0.326 3.674 11 N -0.342 5.342 12 N -0.325 5.325 13 C 0.208 3.792 14 C 0.007 3.993 15 H 0.099 0.901 16 C -0.118 4.118 17 C 0.050 3.950 18 C -0.526 4.526 19 H 0.078 0.922 20 C -0.004 4.004 21 N -0.937 5.937 22 Si 0.967 3.033 23 H -0.252 1.252 24 H -0.285 1.285 25 H -0.282 1.282 26 N -0.466 5.466 27 C 0.068 3.932 28 C 0.040 3.960 29 H 0.066 0.934 30 H 0.139 0.861 31 H 0.067 0.933 32 H 0.135 0.865 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.112 0.888 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.062 0.938 39 H -0.010 1.010 40 H -0.020 1.020 41 H 0.261 0.739 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.113 0.887 45 H 0.075 0.925 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.159 -18.906 -13.542 28.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.261 6.261 3 C 0.302 3.698 4 O -0.395 6.395 5 C 0.120 3.880 6 F -0.147 7.147 7 C -0.168 4.168 8 C -0.088 4.088 9 N -0.154 5.154 10 C -0.032 4.032 11 N -0.186 5.186 12 N -0.164 5.164 13 C -0.061 4.061 14 C -0.014 4.014 15 H 0.117 0.883 16 C -0.176 4.176 17 C 0.012 3.988 18 C -0.564 4.564 19 H 0.096 0.904 20 C -0.201 4.201 21 N -0.577 5.577 22 Si 0.792 3.208 23 H -0.176 1.176 24 H -0.211 1.211 25 H -0.208 1.208 26 N -0.158 5.158 27 C -0.073 4.073 28 C -0.088 4.088 29 H 0.085 0.915 30 H 0.157 0.843 31 H 0.086 0.914 32 H 0.153 0.847 33 H 0.127 0.873 34 H 0.086 0.914 35 H 0.130 0.870 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.008 0.992 40 H -0.001 1.001 41 H 0.070 0.930 42 H 0.121 0.879 43 H 0.115 0.885 44 H 0.132 0.868 45 H 0.094 0.906 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.518 -18.685 -12.504 28.502 hybrid contribution 0.651 0.784 -0.262 1.052 sum -16.867 -17.902 -12.767 27.712 Atomic orbital electron populations 1.23743 0.73595 1.06483 1.03044 1.86533 1.25817 1.31050 1.82672 1.23553 0.91160 0.82370 0.72680 1.90745 1.66788 1.37137 1.44828 1.21220 0.85726 0.93058 0.87986 1.92986 1.86526 1.80273 1.54921 1.23120 0.97989 1.02304 0.93401 1.23108 1.01124 0.91840 0.92728 1.61656 1.24862 0.99980 1.28878 1.22494 0.97392 0.92231 0.91073 1.74360 1.22875 1.04687 1.16693 1.73952 1.12472 1.08507 1.21498 1.25458 1.00419 0.92866 0.87314 1.19804 0.93819 0.86316 1.01422 0.88256 1.21591 0.98006 0.96910 1.01140 1.18860 0.91831 0.95393 0.92750 1.21605 1.13378 1.12208 1.09221 0.90422 1.26022 0.99358 0.99930 0.94815 1.70155 1.31795 1.41267 1.14491 0.85367 0.78083 0.78701 0.78690 1.17579 1.21090 1.20824 1.46383 1.36645 1.14226 1.18503 1.22448 0.99596 1.06470 0.78816 1.23729 0.87708 0.94010 1.03325 0.91535 0.84265 0.91376 0.84679 0.87332 0.91443 0.86974 0.94108 0.90578 0.91920 0.99154 1.00137 0.93001 0.87877 0.88473 0.86842 0.90641 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.56 113.37 1.20 1.42 16 2 O -0.35 -5.21 10.56 -51.33 -0.54 -5.75 16 3 C 0.46 8.76 6.91 71.24 0.49 9.25 16 4 O -0.51 -12.33 15.47 21.97 0.34 -11.99 16 5 C 0.14 2.49 1.64 -10.33 -0.02 2.47 16 6 F -0.17 -3.04 16.96 44.97 0.76 -2.28 16 7 C -0.13 -1.82 6.31 31.47 0.20 -1.62 16 8 C 0.04 0.79 6.63 86.44 0.57 1.36 16 9 N -0.43 -10.39 5.28 -693.52 -3.66 -14.05 16 10 C 0.33 10.60 6.69 260.11 1.74 12.34 16 11 N -0.34 -13.73 11.06 -58.00 -0.64 -14.38 16 12 N -0.32 -14.69 12.18 -49.53 -0.60 -15.30 16 13 C 0.21 8.31 6.58 137.64 0.91 9.22 16 14 C 0.01 0.30 2.71 -11.54 -0.03 0.26 16 15 H 0.10 3.48 7.08 -2.39 -0.02 3.46 16 16 C -0.12 -4.38 8.99 71.98 0.65 -3.73 16 17 C 0.05 2.63 4.43 29.85 0.13 2.77 16 18 C -0.53 -28.45 8.41 25.60 0.22 -28.23 16 19 H 0.08 3.84 7.06 -2.91 -0.02 3.82 16 20 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 21 N -0.94 -57.59 13.29 21.45 0.28 -57.31 16 22 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 23 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 N -0.47 -14.94 3.21 -538.17 -1.73 -16.66 16 27 C 0.07 1.42 10.81 127.77 1.38 2.80 16 28 C 0.04 0.87 5.37 86.65 0.47 1.33 16 29 H 0.07 0.63 8.13 -2.38 -0.02 0.61 16 30 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.07 0.64 8.13 -2.39 -0.02 0.62 16 32 H 0.13 1.23 8.12 -2.39 -0.02 1.21 16 33 H 0.11 1.31 7.84 -2.39 -0.02 1.29 16 34 H 0.07 1.69 6.91 -2.39 -0.02 1.67 16 35 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.08 2.78 6.95 -2.39 -0.02 2.76 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 40 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 41 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.10 2.02 7.48 -2.39 -0.02 2.00 16 44 H 0.11 1.97 8.11 -2.39 -0.02 1.95 16 45 H 0.08 1.97 7.29 -2.39 -0.02 1.95 16 46 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -77.91 386.92 5.59 -72.31 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.99 Total: 10.24 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 8.36 Total: 9.88 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -6.35 Total: -117.69 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.20 Total: -17.74 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.76 Total: -2.28 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -77.91 5.59 -72.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772173065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.081 kcal (2) G-P(sol) polarization free energy of solvation -77.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds