Wall clock time and date at job start Sat Apr 11 2020 06:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 C 1.81396 * 102.99854 * 2 1 4 4 C 1.53002 * 109.47094 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.47379 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47346 * 305.00120 * 5 4 3 7 7 O 1.42900 * 109.47173 * 65.00380 * 5 4 3 8 8 C 1.50699 * 109.47387 * 185.00070 * 5 4 3 9 9 N 1.30299 * 126.35063 * 284.69399 * 8 5 4 10 10 N 1.28527 * 110.05514 * 179.82018 * 9 8 5 11 11 C 1.31207 * 109.85962 * 0.44676 * 10 9 8 12 12 N 1.38585 * 126.47227 * 179.73171 * 11 10 9 13 13 C 1.46854 * 110.99950 * 236.04829 * 12 11 10 14 14 C 1.53035 * 109.52174 * 174.15631 * 13 12 11 15 15 C 1.53119 * 109.27628 * 59.18462 * 14 13 12 16 16 C 1.53120 * 109.16021 * 302.34239 * 15 14 13 17 17 H 1.09007 * 109.50149 * 297.71929 * 16 15 14 18 18 C 1.50699 * 109.50722 * 177.60100 * 16 15 14 19 19 H 1.08002 * 119.99465 * 275.20069 * 18 16 15 20 20 C 1.37875 * 120.00303 * 95.20040 * 18 16 15 21 21 N 1.31515 * 119.99935 * 185.50203 * 20 18 16 22 22 Si 1.86798 * 120.00073 * 5.50242 * 20 18 16 23 23 H 1.48496 * 109.47384 * 84.78425 * 22 20 18 24 24 H 1.48502 * 109.46974 * 204.78736 * 22 20 18 25 25 H 1.48500 * 109.47054 * 324.78532 * 22 20 18 26 26 C 1.46843 * 111.00116 * 111.83781 * 12 11 10 27 27 N 1.36457 * 107.05802 * 359.73407 * 11 10 9 28 28 C 1.46499 * 127.13629 * 179.97438 * 27 11 10 29 29 H 1.08999 * 109.46702 * 300.00150 * 1 2 3 30 30 H 1.09003 * 109.47105 * 60.00002 * 1 2 3 31 31 H 1.08997 * 109.47222 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47161 * 299.99659 * 3 2 1 33 33 H 1.08999 * 109.47478 * 60.00185 * 3 2 1 34 34 H 1.09001 * 109.47134 * 300.00850 * 4 3 2 35 35 H 1.09008 * 109.46623 * 60.00039 * 4 3 2 36 36 H 0.96695 * 114.00083 * 59.99275 * 7 5 4 37 37 H 1.08999 * 109.46305 * 294.18005 * 13 12 11 38 38 H 1.09005 * 109.46058 * 54.15563 * 13 12 11 39 39 H 1.09007 * 109.50190 * 179.11710 * 14 13 12 40 40 H 1.08991 * 109.50450 * 299.23880 * 14 13 12 41 41 H 1.09000 * 109.52561 * 62.24345 * 15 14 13 42 42 H 1.08996 * 109.52148 * 182.37711 * 15 14 13 43 43 H 0.96997 * 119.99785 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.46391 * 305.85769 * 26 12 11 45 45 H 1.08999 * 109.46322 * 65.82578 * 26 12 11 46 46 H 1.09004 * 109.47267 * 269.96949 * 28 27 11 47 47 H 1.08997 * 109.47189 * 29.97691 * 28 27 11 48 48 H 1.09001 * 109.46577 * 149.97641 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0866 3.4307 0.0000 6 1 3.5944 3.9169 -0.8423 7 8 3.6384 4.0235 1.2205 8 6 5.5787 3.6017 -0.1232 9 7 6.4589 3.4055 0.8174 10 7 7.6410 3.6394 0.3705 11 6 7.5772 4.0095 -0.8867 12 7 8.6461 4.3489 -1.7008 13 6 8.4716 5.6933 -2.2653 14 6 9.7315 6.0913 -3.0374 15 6 9.9806 5.0761 -4.1562 16 6 10.1105 3.6777 -3.5462 17 1 10.9702 3.6513 -2.8765 18 6 10.2971 2.6643 -4.6458 19 1 9.4367 2.2532 -5.1529 20 6 11.5661 2.2619 -5.0045 21 7 11.7357 1.4614 -6.0341 22 14 13.0445 2.8539 -4.0282 23 1 13.2464 1.9710 -2.8514 24 1 14.2539 2.8155 -4.8892 25 1 12.8086 4.2459 -3.5679 26 6 8.8397 3.3496 -2.7592 27 7 6.2596 3.9971 -1.2412 28 6 5.6921 4.3373 -2.5483 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8032 2.2371 -0.8900 33 1 1.8032 2.2371 0.8900 34 1 4.1609 1.4703 0.8908 35 1 4.1616 1.4702 -0.8892 36 1 4.0361 3.6392 2.0137 37 1 7.6159 5.6954 -2.9405 38 1 8.2996 6.4063 -1.4589 39 1 9.5956 7.0829 -3.4694 40 1 10.5851 6.1029 -2.3598 41 1 9.1446 5.0922 -4.8555 42 1 10.9004 5.3320 -4.6821 43 1 12.6285 1.1786 -6.2866 44 1 8.9348 2.3603 -2.3117 45 1 7.9823 3.3627 -3.4322 46 1 5.4626 5.4025 -2.5786 47 1 6.4126 4.0984 -3.3305 48 1 4.7788 3.7642 -2.7081 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772176483.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:26 Heat of formation + Delta-G solvation = 29.420210 kcal Electronic energy + Delta-G solvation = -28097.370367 eV Core-core repulsion = 24314.896392 eV Total energy + Delta-G solvation = -3782.473975 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.02884 -38.89778 -38.01502 -35.07604 -33.85756 -33.27692 -32.30248 -30.56327 -29.89551 -29.31299 -27.88637 -26.65570 -25.26858 -23.93817 -22.84734 -21.76282 -21.00159 -20.98909 -19.09759 -17.80890 -17.18364 -16.80325 -16.53031 -16.38860 -16.23700 -15.66181 -15.27156 -14.71648 -14.45466 -14.27467 -14.05794 -13.94997 -13.76381 -13.56050 -13.49763 -13.30047 -12.94268 -12.85485 -12.61955 -12.41251 -12.30625 -11.92623 -11.67313 -11.52370 -11.35870 -11.18305 -10.87892 -10.80479 -10.44290 -10.40588 -10.34172 -10.17041 -9.99799 -9.75524 -9.65744 -9.18847 -8.91973 -8.61109 -8.51157 -8.05867 -6.17940 -4.19685 1.22729 1.67556 2.19751 2.29681 2.86085 3.27896 3.35955 3.39085 3.57153 3.84204 4.04688 4.31221 4.36121 4.40953 4.54136 4.60501 4.71101 4.72580 4.76308 4.81264 5.01193 5.03657 5.12547 5.14563 5.16765 5.29311 5.30779 5.52323 5.55299 5.59743 5.66656 5.81299 5.83547 5.95814 6.03790 6.14506 6.20597 6.40337 6.46333 6.58433 6.72726 6.97455 7.16390 7.16921 7.30290 7.43372 7.65878 8.37766 8.81819 8.84028 9.44649 10.94585 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.014750 B = 0.002647 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.850013 B =10575.003814 C =11587.158846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.262 6.262 3 C -0.079 4.079 4 C -0.130 4.130 5 C 0.213 3.787 6 H 0.113 0.887 7 O -0.545 6.545 8 C 0.130 3.870 9 N -0.279 5.279 10 N -0.269 5.269 11 C 0.369 3.631 12 N -0.448 5.448 13 C 0.060 3.940 14 C -0.120 4.120 15 C -0.115 4.115 16 C 0.023 3.977 17 H 0.046 0.954 18 C -0.517 4.517 19 H 0.072 0.928 20 C 0.076 3.924 21 N -0.896 5.896 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.290 1.290 25 H -0.262 1.262 26 C 0.073 3.927 27 N -0.494 5.494 28 C 0.061 3.939 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.390 0.610 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.266 0.734 44 H 0.077 0.923 45 H 0.034 0.966 46 H 0.082 0.918 47 H 0.100 0.900 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.290 5.570 9.014 23.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.036 6.036 3 C -0.228 4.228 4 C -0.170 4.170 5 C 0.149 3.851 6 H 0.130 0.870 7 O -0.350 6.350 8 C -0.138 4.138 9 N -0.121 5.121 10 N -0.111 5.111 11 C 0.014 3.986 12 N -0.172 5.172 13 C -0.067 4.067 14 C -0.158 4.158 15 C -0.153 4.153 16 C 0.003 3.997 17 H 0.064 0.936 18 C -0.555 4.555 19 H 0.090 0.910 20 C -0.127 4.127 21 N -0.533 5.533 22 Si 0.704 3.296 23 H -0.199 1.199 24 H -0.216 1.216 25 H -0.186 1.186 26 C -0.053 4.053 27 N -0.192 5.192 28 C -0.083 4.083 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.240 0.760 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.052 0.948 46 H 0.101 0.899 47 H 0.118 0.882 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.828 4.612 10.111 22.730 hybrid contribution -0.819 1.194 -1.140 1.843 sum -20.647 5.806 8.971 23.249 Atomic orbital electron populations 1.23380 0.94149 1.06581 1.04921 1.87127 1.07336 1.11073 1.98089 1.23310 0.99324 0.94473 1.05672 1.22012 0.93694 0.95721 1.05587 1.19924 0.82776 0.93055 0.89389 0.86971 1.86538 1.68802 1.64053 1.15570 1.25358 0.98187 1.05139 0.85142 1.74007 0.95147 1.18325 1.24616 1.74528 1.13802 1.17399 1.05353 1.23538 0.80092 1.01401 0.93596 1.59378 1.30258 1.04439 1.23169 1.22263 0.98843 0.88001 0.97619 1.21716 0.96661 0.98991 0.98458 1.21935 1.01297 0.95885 0.96182 1.19181 0.92669 0.93253 0.94588 0.93591 1.20814 0.94088 1.23403 1.17243 0.91031 1.25033 0.98879 0.94248 0.94535 1.69896 1.22960 1.34537 1.25903 0.86850 0.82091 0.80330 0.80299 1.19895 1.21626 1.18647 1.22617 1.00057 0.93227 0.89389 1.47423 1.08780 1.50992 1.12025 1.22397 1.01211 1.02423 0.82223 0.90427 0.90492 0.88040 0.89959 0.88984 0.89146 0.89683 0.76033 0.94355 0.91135 0.91890 0.91196 0.92982 0.92156 0.92454 0.90414 0.94809 0.89899 0.88199 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.76 101.05 1.09 0.40 16 2 S -0.26 -2.32 22.38 -107.50 -2.41 -4.72 16 3 C -0.08 -0.57 5.84 37.16 0.22 -0.35 16 4 C -0.13 -1.11 4.88 -26.73 -0.13 -1.24 16 5 C 0.21 1.94 3.31 -27.89 -0.09 1.84 16 6 H 0.11 0.81 7.28 -51.93 -0.38 0.43 16 7 O -0.54 -5.08 12.86 -35.23 -0.45 -5.53 16 8 C 0.13 1.72 6.93 -154.01 -1.07 0.65 16 9 N -0.28 -4.60 12.09 32.99 0.40 -4.20 16 10 N -0.27 -5.13 12.23 30.31 0.37 -4.76 16 11 C 0.37 6.32 6.65 -318.87 -2.12 4.20 16 12 N -0.45 -7.91 4.70 -174.55 -0.82 -8.73 16 13 C 0.06 0.88 5.13 -3.83 -0.02 0.86 16 14 C -0.12 -1.86 6.09 -26.65 -0.16 -2.02 16 15 C -0.11 -2.16 5.27 -26.61 -0.14 -2.30 16 16 C 0.02 0.49 1.94 -91.69 -0.18 0.32 16 17 H 0.05 1.07 5.27 -51.93 -0.27 0.80 16 18 C -0.52 -13.57 8.86 -34.44 -0.31 -13.87 16 19 H 0.07 2.03 8.06 -52.49 -0.42 1.60 16 20 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 21 N -0.90 -26.38 13.96 55.43 0.77 -25.60 16 22 Si 0.88 21.04 27.01 -169.99 -4.59 16.45 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.26 -5.97 6.80 56.52 0.38 -5.58 16 26 C 0.07 1.41 4.52 -3.84 -0.02 1.39 16 27 N -0.49 -6.68 3.21 -121.46 -0.39 -7.07 16 28 C 0.06 0.58 9.13 59.85 0.55 1.12 16 29 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 33 H 0.09 0.62 7.82 -51.92 -0.41 0.21 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.39 3.05 8.97 45.56 0.41 3.46 16 37 H 0.04 0.49 5.65 -51.93 -0.29 0.20 16 38 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 39 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 45 H 0.03 0.61 5.74 -51.93 -0.30 0.31 16 46 H 0.08 0.64 7.96 -51.93 -0.41 0.23 16 47 H 0.10 1.08 4.96 -51.93 -0.26 0.82 16 48 H 0.09 0.61 7.51 -51.93 -0.39 0.22 16 LS Contribution 389.39 15.07 5.87 5.87 Total: -1.00 -32.58 389.39 -10.67 -43.25 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.95 Total: 2.07 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -2.48 Total: -7.01 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.33 Total: -50.37 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.45 Total: -5.53 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.59 Total: 16.45 kcal Atomic # 16 Polarization: -2.32 SS G_CDS: -2.41 Total: -4.72 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.58 -10.67 -43.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772176483.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.673 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds