Wall clock time and date at job start Sat Apr 11 2020 06:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 C 1.81396 * 102.99854 * 2 1 4 4 C 1.53002 * 109.47094 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.47379 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47346 * 305.00120 * 5 4 3 7 7 O 1.42900 * 109.47173 * 65.00380 * 5 4 3 8 8 C 1.50699 * 109.47387 * 185.00070 * 5 4 3 9 9 N 1.30299 * 126.35063 * 284.69399 * 8 5 4 10 10 N 1.28527 * 110.05514 * 179.82018 * 9 8 5 11 11 C 1.31207 * 109.85962 * 0.44676 * 10 9 8 12 12 N 1.38585 * 126.47227 * 179.73171 * 11 10 9 13 13 C 1.46854 * 110.99950 * 236.04829 * 12 11 10 14 14 C 1.53035 * 109.52174 * 174.15631 * 13 12 11 15 15 C 1.53119 * 109.27628 * 59.18462 * 14 13 12 16 16 C 1.53120 * 109.16021 * 302.34239 * 15 14 13 17 17 H 1.09007 * 109.50149 * 297.71929 * 16 15 14 18 18 C 1.50699 * 109.50722 * 177.60100 * 16 15 14 19 19 H 1.08002 * 119.99465 * 275.20069 * 18 16 15 20 20 C 1.37875 * 120.00303 * 95.20040 * 18 16 15 21 21 N 1.31515 * 119.99935 * 185.50203 * 20 18 16 22 22 Si 1.86798 * 120.00073 * 5.50242 * 20 18 16 23 23 H 1.48496 * 109.47384 * 84.78425 * 22 20 18 24 24 H 1.48502 * 109.46974 * 204.78736 * 22 20 18 25 25 H 1.48500 * 109.47054 * 324.78532 * 22 20 18 26 26 C 1.46843 * 111.00116 * 111.83781 * 12 11 10 27 27 N 1.36457 * 107.05802 * 359.73407 * 11 10 9 28 28 C 1.46499 * 127.13629 * 179.97438 * 27 11 10 29 29 H 1.08999 * 109.46702 * 300.00150 * 1 2 3 30 30 H 1.09003 * 109.47105 * 60.00002 * 1 2 3 31 31 H 1.08997 * 109.47222 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47161 * 299.99659 * 3 2 1 33 33 H 1.08999 * 109.47478 * 60.00185 * 3 2 1 34 34 H 1.09001 * 109.47134 * 300.00850 * 4 3 2 35 35 H 1.09008 * 109.46623 * 60.00039 * 4 3 2 36 36 H 0.96695 * 114.00083 * 59.99275 * 7 5 4 37 37 H 1.08999 * 109.46305 * 294.18005 * 13 12 11 38 38 H 1.09005 * 109.46058 * 54.15563 * 13 12 11 39 39 H 1.09007 * 109.50190 * 179.11710 * 14 13 12 40 40 H 1.08991 * 109.50450 * 299.23880 * 14 13 12 41 41 H 1.09000 * 109.52561 * 62.24345 * 15 14 13 42 42 H 1.08996 * 109.52148 * 182.37711 * 15 14 13 43 43 H 0.96997 * 119.99785 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.46391 * 305.85769 * 26 12 11 45 45 H 1.08999 * 109.46322 * 65.82578 * 26 12 11 46 46 H 1.09004 * 109.47267 * 269.96949 * 28 27 11 47 47 H 1.08997 * 109.47189 * 29.97691 * 28 27 11 48 48 H 1.09001 * 109.46577 * 149.97641 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0866 3.4307 0.0000 6 1 3.5944 3.9169 -0.8423 7 8 3.6384 4.0235 1.2205 8 6 5.5787 3.6017 -0.1232 9 7 6.4589 3.4055 0.8174 10 7 7.6410 3.6394 0.3705 11 6 7.5772 4.0095 -0.8867 12 7 8.6461 4.3489 -1.7008 13 6 8.4716 5.6933 -2.2653 14 6 9.7315 6.0913 -3.0374 15 6 9.9806 5.0761 -4.1562 16 6 10.1105 3.6777 -3.5462 17 1 10.9702 3.6513 -2.8765 18 6 10.2971 2.6643 -4.6458 19 1 9.4367 2.2532 -5.1529 20 6 11.5661 2.2619 -5.0045 21 7 11.7357 1.4614 -6.0341 22 14 13.0445 2.8539 -4.0282 23 1 13.2464 1.9710 -2.8514 24 1 14.2539 2.8155 -4.8892 25 1 12.8086 4.2459 -3.5679 26 6 8.8397 3.3496 -2.7592 27 7 6.2596 3.9971 -1.2412 28 6 5.6921 4.3373 -2.5483 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8032 2.2371 -0.8900 33 1 1.8032 2.2371 0.8900 34 1 4.1609 1.4703 0.8908 35 1 4.1616 1.4702 -0.8892 36 1 4.0361 3.6392 2.0137 37 1 7.6159 5.6954 -2.9405 38 1 8.2996 6.4063 -1.4589 39 1 9.5956 7.0829 -3.4694 40 1 10.5851 6.1029 -2.3598 41 1 9.1446 5.0922 -4.8555 42 1 10.9004 5.3320 -4.6821 43 1 12.6285 1.1786 -6.2866 44 1 8.9348 2.3603 -2.3117 45 1 7.9823 3.3627 -3.4322 46 1 5.4626 5.4025 -2.5786 47 1 6.4126 4.0984 -3.3305 48 1 4.7788 3.7642 -2.7081 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772176483.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:24 Heat of formation + Delta-G solvation = 8.035372 kcal Electronic energy + Delta-G solvation = -28098.297683 eV Core-core repulsion = 24314.896392 eV Total energy + Delta-G solvation = -3783.401291 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -44.17955 -40.24303 -38.81828 -36.26891 -35.37237 -34.14622 -33.84335 -32.18315 -30.96604 -29.79299 -28.82116 -27.50721 -27.10074 -25.30084 -23.62654 -23.24632 -22.25240 -21.93749 -20.61584 -19.24610 -18.56332 -17.75589 -17.62131 -17.28129 -17.25044 -16.59859 -16.23774 -16.05250 -15.93852 -15.48378 -14.98885 -14.94736 -14.63549 -14.51833 -14.38869 -14.36129 -14.08781 -14.01331 -13.89615 -13.64714 -13.00991 -12.94290 -12.93503 -12.86467 -12.61714 -12.53411 -12.31548 -11.89008 -11.85474 -11.70509 -11.50892 -11.42658 -11.23595 -11.19113 -11.00181 -10.92806 -10.68235 -10.16346 -9.80926 -8.72300 -8.31563 -6.35133 0.49212 0.74022 1.27860 1.34857 1.38665 1.47315 1.64860 1.68951 2.32657 2.33932 2.99716 3.06141 3.29896 3.53284 3.64802 3.82729 3.83215 3.93159 3.96244 4.01356 4.07493 4.16403 4.28710 4.32356 4.35054 4.36122 4.41982 4.44236 4.52924 4.59514 4.69113 4.70582 4.79500 4.84761 4.89741 4.91282 4.94412 5.01944 5.07745 5.19516 5.41025 5.51289 5.59185 5.65081 5.81601 6.17755 6.27511 6.49073 6.71805 7.31563 7.63313 8.84561 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.014750 B = 0.002647 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.850013 B =10575.003814 C =11587.158846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.332 6.332 3 C -0.061 4.061 4 C -0.123 4.123 5 C 0.221 3.779 6 H 0.144 0.856 7 O -0.546 6.546 8 C 0.149 3.851 9 N -0.311 5.311 10 N -0.313 5.313 11 C 0.354 3.646 12 N -0.461 5.461 13 C 0.060 3.940 14 C -0.112 4.112 15 C -0.110 4.110 16 C 0.020 3.980 17 H 0.031 0.969 18 C -0.511 4.511 19 H 0.039 0.961 20 C 0.020 3.980 21 N -0.945 5.945 22 Si 0.933 3.067 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.241 1.241 26 C 0.088 3.912 27 N -0.489 5.489 28 C 0.049 3.951 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.395 0.605 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.266 0.734 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.110 0.890 47 H 0.086 0.914 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.831 8.182 9.458 26.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 S -0.107 6.107 3 C -0.209 4.209 4 C -0.163 4.163 5 C 0.156 3.844 6 H 0.161 0.839 7 O -0.352 6.352 8 C -0.121 4.121 9 N -0.152 5.152 10 N -0.155 5.155 11 C -0.002 4.002 12 N -0.186 5.186 13 C -0.066 4.066 14 C -0.150 4.150 15 C -0.148 4.148 16 C 0.000 4.000 17 H 0.049 0.951 18 C -0.550 4.550 19 H 0.057 0.943 20 C -0.178 4.178 21 N -0.585 5.585 22 Si 0.758 3.242 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.165 1.165 26 C -0.038 4.038 27 N -0.186 5.186 28 C -0.092 4.092 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.246 0.754 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.129 0.871 47 H 0.105 0.895 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.396 7.255 10.567 25.805 hybrid contribution -0.213 0.325 -1.266 1.325 sum -22.609 7.580 9.301 25.596 Atomic orbital electron populations 1.23406 0.90633 1.07351 1.06063 1.87394 1.11359 1.13642 1.98267 1.23215 0.97972 0.92713 1.06975 1.21894 0.94835 0.95119 1.04407 1.20188 0.80183 0.93575 0.90408 0.83873 1.86532 1.68552 1.64226 1.15874 1.26178 0.99511 1.02241 0.84173 1.73921 0.95075 1.20113 1.26089 1.74405 1.15523 1.18605 1.06962 1.23261 0.81276 1.02458 0.93240 1.59150 1.31791 1.05074 1.22624 1.22376 0.99326 0.86521 0.98391 1.21658 0.96749 0.99565 0.96978 1.21763 1.01120 0.94620 0.97312 1.19133 0.93445 0.94093 0.93280 0.95050 1.21100 0.92816 1.23541 1.17540 0.94310 1.25795 1.01821 0.94755 0.95462 1.70026 1.23547 1.36849 1.28036 0.85939 0.78804 0.80805 0.78623 1.20329 1.21404 1.16457 1.22181 0.99305 0.92553 0.89778 1.47508 1.07598 1.50147 1.13361 1.22757 1.01884 1.04841 0.79709 0.89310 0.89251 0.87519 0.88012 0.88174 0.90728 0.90649 0.75399 0.91966 0.89784 0.88216 0.92142 0.92232 0.93368 0.92512 0.93406 0.93516 0.87121 0.89525 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.76 113.37 1.22 0.25 16 2 S -0.33 -5.51 22.38 -56.49 -1.26 -6.78 16 3 C -0.06 -0.72 5.84 71.98 0.42 -0.30 16 4 C -0.12 -1.88 4.88 30.59 0.15 -1.73 16 5 C 0.22 3.36 3.31 29.85 0.10 3.46 16 6 H 0.14 1.35 7.28 -2.39 -0.02 1.34 16 7 O -0.55 -8.66 12.86 -148.98 -1.92 -10.58 16 8 C 0.15 3.65 6.93 137.64 0.95 4.61 16 9 N -0.31 -10.14 12.09 -49.54 -0.60 -10.74 16 10 N -0.31 -11.98 12.23 -58.00 -0.71 -12.69 16 11 C 0.35 11.83 6.65 260.11 1.73 13.56 16 12 N -0.46 -15.80 4.70 -706.15 -3.32 -19.12 16 13 C 0.06 1.59 5.13 86.32 0.44 2.04 16 14 C -0.11 -3.11 6.09 30.65 0.19 -2.92 16 15 C -0.11 -3.96 5.27 30.67 0.16 -3.80 16 16 C 0.02 0.87 1.94 -11.49 -0.02 0.85 16 17 H 0.03 1.46 5.27 -2.38 -0.01 1.45 16 18 C -0.51 -27.56 8.86 25.60 0.23 -27.33 16 19 H 0.04 2.29 8.06 -2.91 -0.02 2.26 16 20 C 0.02 1.10 5.47 84.65 0.46 1.57 16 21 N -0.94 -57.53 13.96 21.45 0.30 -57.24 16 22 Si 0.93 44.07 27.01 68.60 1.85 45.92 16 23 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 24 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 25 H -0.24 -10.46 6.80 99.48 0.68 -9.79 16 26 C 0.09 3.42 4.52 86.33 0.39 3.81 16 27 N -0.49 -12.14 3.21 -538.18 -1.73 -13.87 16 28 C 0.05 0.76 9.13 127.77 1.17 1.92 16 29 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 1.05 7.82 -2.39 -0.02 1.03 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.40 5.51 8.97 -74.06 -0.66 4.85 16 37 H 0.06 1.36 5.65 -2.39 -0.01 1.34 16 38 H 0.08 2.06 8.10 -2.38 -0.02 2.04 16 39 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.27 15.28 8.31 -92.71 -0.77 14.50 16 44 H 0.05 2.09 8.10 -2.39 -0.02 2.08 16 45 H 0.05 1.66 5.74 -2.39 -0.01 1.64 16 46 H 0.11 1.15 7.96 -2.38 -0.02 1.13 16 47 H 0.09 1.62 4.96 -2.39 -0.01 1.61 16 48 H 0.12 1.09 7.51 -2.39 -0.02 1.08 16 Total: -1.00 -74.93 389.39 0.48 -74.45 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.27 Total: 14.65 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 7.59 Total: -4.02 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -6.05 Total: -113.66 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -1.92 Total: -10.58 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.85 Total: 45.92 kcal Atomic # 16 Polarization: -5.51 SS G_CDS: -1.26 Total: -6.78 kcal Total: -74.93 0.48 -74.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772176483.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.488 kcal (2) G-P(sol) polarization free energy of solvation -74.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds