Wall clock time and date at job start Sat Apr 11 2020 06:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34224 * 117.00020 * 2 1 4 4 O 1.20825 * 120.00443 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99953 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47198 * 180.02562 * 5 3 2 7 7 C 1.37104 * 119.99811 * 266.57118 * 6 5 3 8 8 H 1.07997 * 119.99672 * 140.59376 * 7 6 5 9 9 C 1.38943 * 119.99740 * 320.59555 * 7 6 5 10 10 N 1.31415 * 119.99931 * 161.00559 * 9 7 6 11 11 Si 1.86802 * 120.00282 * 340.99823 * 9 7 6 12 12 H 1.48502 * 109.46818 * 94.07550 * 11 9 7 13 13 H 1.48504 * 109.47105 * 214.07115 * 11 9 7 14 14 H 1.48497 * 109.47001 * 334.07309 * 11 9 7 15 15 C 1.34775 * 120.00431 * 86.56987 * 6 5 3 16 16 O 1.21293 * 119.99924 * 4.34542 * 15 6 5 17 17 C 1.50693 * 120.00312 * 184.34317 * 15 6 5 18 18 H 1.08999 * 109.70489 * 324.74784 * 17 15 6 19 19 C 1.53076 * 109.67511 * 204.22687 * 17 15 6 20 20 C 1.50170 * 109.89361 * 289.16674 * 19 17 15 21 21 O 1.21282 * 118.24538 * 162.39327 * 20 19 17 22 22 N 1.33354 * 123.51114 * 342.41827 * 20 19 17 23 23 C 1.45758 * 124.10050 * 2.22009 * 22 20 19 24 24 H 1.09009 * 109.13226 * 101.13734 * 23 22 20 25 25 C 1.53002 * 109.30013 * 220.60845 * 23 22 20 26 26 C 1.52995 * 109.47447 * 295.06517 * 25 23 22 27 27 C 1.53007 * 109.47159 * 175.29828 * 26 25 23 28 28 C 1.52994 * 109.47206 * 295.30186 * 26 25 23 29 29 C 1.52911 * 110.49302 * 340.92393 * 23 22 20 30 30 H 1.09002 * 109.46674 * 59.99518 * 1 2 3 31 31 H 1.08999 * 109.47063 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46996 * 299.99678 * 1 2 3 33 33 H 1.09000 * 109.47423 * 59.99965 * 5 3 2 34 34 H 1.09000 * 109.47021 * 300.00319 * 5 3 2 35 35 H 0.96995 * 120.00273 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.40149 * 49.29729 * 19 17 15 37 37 H 1.09007 * 109.40115 * 169.03743 * 19 17 15 38 38 H 0.96992 * 117.95495 * 182.22006 * 22 20 19 39 39 H 1.08995 * 109.47329 * 175.05858 * 25 23 22 40 40 H 1.09002 * 109.46549 * 55.06354 * 25 23 22 41 41 H 1.09002 * 109.47314 * 55.30160 * 26 25 23 42 42 H 1.09005 * 109.46897 * 184.61984 * 27 26 25 43 43 H 1.08998 * 109.47333 * 304.62842 * 27 26 25 44 44 H 1.08997 * 109.46466 * 64.63088 * 27 26 25 45 45 H 1.09002 * 109.47118 * 59.99872 * 28 26 25 46 46 H 1.09001 * 109.47482 * 180.02562 * 28 26 25 47 47 H 1.09002 * 109.46963 * 300.00189 * 28 26 25 48 48 H 1.08999 * 109.60817 * 170.50679 * 29 23 22 49 49 H 1.09002 * 109.60412 * 290.83824 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 4.2437 3.3176 -1.1848 8 1 3.9354 4.3430 -1.3256 9 6 4.9058 2.6449 -2.2044 10 7 4.8353 3.0895 -3.4390 11 14 5.8964 1.1084 -1.8203 12 1 5.0492 -0.0926 -2.0326 13 1 7.0788 1.0448 -2.7165 14 1 6.3486 1.1516 -0.4065 15 6 4.1064 3.3450 1.1656 16 8 3.9516 2.7606 2.2171 17 6 4.4381 4.8149 1.1623 18 1 5.1136 5.0375 0.3363 19 6 5.1017 5.1965 2.4879 20 6 4.0893 5.1562 3.5964 21 8 4.4915 5.1100 4.7396 22 7 2.7717 5.1680 3.3909 23 6 2.1503 5.1744 2.0724 24 1 1.8091 4.1671 1.8334 25 6 0.9514 6.1250 2.0831 26 6 -0.1179 5.5867 3.0357 27 6 -1.2651 6.5941 3.1363 28 6 -0.6528 4.2561 2.5025 29 6 3.1506 5.6344 1.0114 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.9558 0.7809 -0.8908 34 1 3.9564 0.7805 0.8891 35 1 5.2977 2.6201 -4.1507 36 1 5.9055 4.4934 2.7060 37 1 5.5136 6.2027 2.4102 38 1 2.1905 5.1727 4.1674 39 1 0.5379 6.1995 1.0774 40 1 1.2729 7.1113 2.4177 41 1 0.3186 5.4334 4.0227 42 1 -1.9873 6.2495 3.8765 43 1 -0.8710 7.5646 3.4375 44 1 -1.7543 6.6855 2.1666 45 1 0.1645 3.5385 2.4308 46 1 -1.4150 3.8728 3.1809 47 1 -1.0893 4.4094 1.5155 48 1 2.7300 5.4748 0.0185 49 1 3.3698 6.6931 1.1499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349129713.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:49 Heat of formation + Delta-G solvation = -159.661749 kcal Electronic energy + Delta-G solvation = -32993.996472 eV Core-core repulsion = 28728.277665 eV Total energy + Delta-G solvation = -4265.718806 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.64452 -39.88495 -38.43708 -37.23816 -36.04817 -35.08820 -34.74275 -32.55749 -32.14623 -30.03497 -29.06583 -27.14777 -26.92374 -26.35260 -25.14940 -23.40547 -22.03893 -21.05377 -20.15200 -19.56340 -18.58024 -17.52117 -17.23093 -16.67765 -16.35693 -15.88328 -15.77172 -15.55740 -15.35853 -15.23743 -14.56919 -14.44549 -14.08556 -13.65564 -13.51771 -13.39737 -13.21828 -13.08785 -12.90000 -12.65120 -12.41677 -12.19338 -12.06442 -11.92142 -11.84737 -11.68751 -11.45069 -11.38543 -11.28606 -11.02099 -10.70000 -10.65740 -10.62769 -10.55006 -10.41929 -10.24491 -10.17867 -9.97142 -9.39873 -9.21785 -8.77269 -8.53837 -8.06271 -6.64125 -4.29807 2.76366 2.88100 2.92801 3.12343 3.15169 3.22096 3.59786 3.78101 3.93620 4.13143 4.68025 4.78937 4.82981 4.90149 5.08313 5.18097 5.24934 5.28142 5.31322 5.37301 5.38471 5.54927 5.57919 5.61294 5.65334 5.70244 5.71784 5.78155 5.79076 5.82918 5.90911 5.95928 6.00247 6.12992 6.16530 6.22197 6.32808 6.38277 6.40285 6.43515 6.60091 6.77510 7.05866 7.24119 7.85845 7.86278 8.04807 8.30030 8.73029 8.74660 9.09215 9.41203 10.45618 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010211 B = 0.005430 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.466131 B = 5154.906826 C = 6462.847094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.450 3.550 4 O -0.488 6.488 5 C 0.105 3.895 6 N -0.448 5.448 7 C -0.344 4.344 8 H 0.110 0.890 9 C 0.068 3.932 10 N -0.852 5.852 11 Si 0.862 3.138 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.255 1.255 15 C 0.500 3.500 16 O -0.579 6.579 17 C -0.098 4.098 18 H 0.117 0.883 19 C -0.117 4.117 20 C 0.542 3.458 21 O -0.578 6.578 22 N -0.704 5.704 23 C 0.136 3.864 24 H 0.089 0.911 25 C -0.124 4.124 26 C -0.097 4.097 27 C -0.145 4.145 28 C -0.148 4.148 29 C -0.114 4.114 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.278 0.722 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.390 0.610 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.048 0.952 47 H 0.056 0.944 48 H 0.095 0.905 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.939 2.070 4.647 9.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.286 6.286 3 C 0.291 3.709 4 O -0.373 6.373 5 C -0.020 4.020 6 N -0.169 5.169 7 C -0.471 4.471 8 H 0.128 0.872 9 C -0.140 4.140 10 N -0.486 5.486 11 Si 0.688 3.312 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.179 1.179 15 C 0.290 3.710 16 O -0.462 6.462 17 C -0.119 4.119 18 H 0.135 0.865 19 C -0.157 4.157 20 C 0.330 3.670 21 O -0.459 6.459 22 N -0.355 5.355 23 C 0.031 3.969 24 H 0.106 0.894 25 C -0.162 4.162 26 C -0.116 4.116 27 C -0.202 4.202 28 C -0.205 4.205 29 C -0.152 4.152 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.225 0.775 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.114 0.886 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.839 2.050 5.310 9.688 hybrid contribution -0.063 -0.919 -0.150 0.933 sum -7.902 1.131 5.160 9.506 Atomic orbital electron populations 1.23130 0.77499 1.02861 1.02190 1.86530 1.22686 1.34554 1.84848 1.24722 0.92780 0.81245 0.72181 1.90578 1.66561 1.36116 1.44085 1.21374 0.86953 0.88717 1.04943 1.43370 1.58649 1.08119 1.06765 1.19095 1.38095 1.00288 0.89636 0.87210 1.25371 0.95887 0.98041 0.94742 1.69721 1.39077 1.40549 0.99242 0.87161 0.80951 0.82847 0.80234 1.19692 1.20689 1.17920 1.20264 0.78632 0.89098 0.83007 1.90616 1.54691 1.69597 1.31331 1.21223 0.98887 0.93043 0.98791 0.86476 1.21508 0.97889 1.03832 0.92497 1.19856 0.83262 0.73722 0.90136 1.90670 1.79121 1.52258 1.23858 1.45431 1.06599 1.74600 1.08910 1.21109 0.92566 1.00674 0.82567 0.89356 1.22026 0.94804 0.98632 1.00716 1.21106 0.95690 0.95760 0.99031 1.21827 0.98023 0.98707 1.01652 1.21879 1.01108 0.96825 1.00734 1.21787 0.94278 0.99082 1.00063 0.92169 0.88789 0.92364 0.87611 0.87205 0.91197 0.88203 0.88324 0.77473 0.90297 0.91503 0.91666 0.92947 0.92837 0.92628 0.91908 0.93305 0.92503 0.88624 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.57 16 2 O -0.37 -6.49 10.57 -39.24 -0.41 -6.91 16 3 C 0.45 9.16 8.00 36.01 0.29 9.45 16 4 O -0.49 -10.58 16.09 -18.75 -0.30 -10.88 16 5 C 0.11 2.21 4.65 -5.20 -0.02 2.18 16 6 N -0.45 -9.88 1.67 -116.10 -0.19 -10.07 16 7 C -0.34 -8.09 8.66 -14.93 -0.13 -8.22 16 8 H 0.11 2.67 6.39 -52.49 -0.34 2.33 16 9 C 0.07 1.64 5.33 -17.47 -0.09 1.55 16 10 N -0.85 -21.74 13.96 55.50 0.77 -20.96 16 11 Si 0.86 18.42 24.94 -169.99 -4.24 14.18 16 12 H -0.27 -5.54 6.66 56.52 0.38 -5.16 16 13 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 14 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 15 C 0.50 10.59 5.36 -10.99 -0.06 10.53 16 16 O -0.58 -13.42 14.15 5.55 0.08 -13.34 16 17 C -0.10 -1.73 2.25 -91.55 -0.21 -1.94 16 18 H 0.12 2.04 6.98 -51.93 -0.36 1.68 16 19 C -0.12 -1.97 5.22 -28.10 -0.15 -2.12 16 20 C 0.54 10.20 6.38 -11.87 -0.08 10.12 16 21 O -0.58 -12.73 17.78 5.56 0.10 -12.63 16 22 N -0.70 -11.62 4.91 -54.85 -0.27 -11.89 16 23 C 0.14 2.10 2.24 -68.38 -0.15 1.95 16 24 H 0.09 1.66 5.35 -51.92 -0.28 1.38 16 25 C -0.12 -1.53 4.32 -26.73 -0.12 -1.65 16 26 C -0.10 -1.13 2.85 -90.62 -0.26 -1.39 16 27 C -0.14 -1.41 9.19 37.16 0.34 -1.07 16 28 C -0.15 -1.90 8.95 37.15 0.33 -1.57 16 29 C -0.11 -1.77 4.86 -26.59 -0.13 -1.90 16 30 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 33 H 0.11 2.22 3.41 -51.93 -0.18 2.04 16 34 H 0.11 2.20 7.47 -51.93 -0.39 1.81 16 35 H 0.28 6.65 8.31 -40.82 -0.34 6.31 16 36 H 0.10 1.77 8.10 -51.93 -0.42 1.35 16 37 H 0.10 1.34 8.14 -51.92 -0.42 0.92 16 38 H 0.39 6.07 6.96 -40.82 -0.28 5.78 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.77 6.52 -51.93 -0.34 0.43 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.97 6.44 -51.93 -0.33 0.64 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.10 1.59 7.21 -51.93 -0.37 1.22 16 49 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 LS Contribution 384.55 15.07 5.80 5.80 Total: -1.00 -30.28 384.55 -5.56 -35.83 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -7.52 Total: 13.34 kcal Atomic # 6 Polarization: 16.88 SS G_CDS: 0.64 Total: 17.52 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.31 Total: -42.92 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -0.54 Total: -43.75 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -4.24 Total: 14.18 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.28 -5.56 -35.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349129713.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.829 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds