Wall clock time and date at job start Sat Apr 11 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34224 * 117.00020 * 2 1 4 4 O 1.20825 * 120.00443 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99953 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47198 * 180.02562 * 5 3 2 7 7 C 1.37104 * 119.99811 * 266.57118 * 6 5 3 8 8 H 1.07997 * 119.99672 * 140.59376 * 7 6 5 9 9 C 1.38943 * 119.99740 * 320.59555 * 7 6 5 10 10 N 1.31415 * 119.99931 * 161.00559 * 9 7 6 11 11 Si 1.86802 * 120.00282 * 340.99823 * 9 7 6 12 12 H 1.48502 * 109.46818 * 94.07550 * 11 9 7 13 13 H 1.48504 * 109.47105 * 214.07115 * 11 9 7 14 14 H 1.48497 * 109.47001 * 334.07309 * 11 9 7 15 15 C 1.34775 * 120.00431 * 86.56987 * 6 5 3 16 16 O 1.21293 * 119.99924 * 4.34542 * 15 6 5 17 17 C 1.50693 * 120.00312 * 184.34317 * 15 6 5 18 18 H 1.08999 * 109.70489 * 324.74784 * 17 15 6 19 19 C 1.53076 * 109.67511 * 204.22687 * 17 15 6 20 20 C 1.50170 * 109.89361 * 289.16674 * 19 17 15 21 21 O 1.21282 * 118.24538 * 162.39327 * 20 19 17 22 22 N 1.33354 * 123.51114 * 342.41827 * 20 19 17 23 23 C 1.45758 * 124.10050 * 2.22009 * 22 20 19 24 24 H 1.09009 * 109.13226 * 101.13734 * 23 22 20 25 25 C 1.53002 * 109.30013 * 220.60845 * 23 22 20 26 26 C 1.52995 * 109.47447 * 295.06517 * 25 23 22 27 27 C 1.53007 * 109.47159 * 175.29828 * 26 25 23 28 28 C 1.52994 * 109.47206 * 295.30186 * 26 25 23 29 29 C 1.52911 * 110.49302 * 340.92393 * 23 22 20 30 30 H 1.09002 * 109.46674 * 59.99518 * 1 2 3 31 31 H 1.08999 * 109.47063 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46996 * 299.99678 * 1 2 3 33 33 H 1.09000 * 109.47423 * 59.99965 * 5 3 2 34 34 H 1.09000 * 109.47021 * 300.00319 * 5 3 2 35 35 H 0.96995 * 120.00273 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.40149 * 49.29729 * 19 17 15 37 37 H 1.09007 * 109.40115 * 169.03743 * 19 17 15 38 38 H 0.96992 * 117.95495 * 182.22006 * 22 20 19 39 39 H 1.08995 * 109.47329 * 175.05858 * 25 23 22 40 40 H 1.09002 * 109.46549 * 55.06354 * 25 23 22 41 41 H 1.09002 * 109.47314 * 55.30160 * 26 25 23 42 42 H 1.09005 * 109.46897 * 184.61984 * 27 26 25 43 43 H 1.08998 * 109.47333 * 304.62842 * 27 26 25 44 44 H 1.08997 * 109.46466 * 64.63088 * 27 26 25 45 45 H 1.09002 * 109.47118 * 59.99872 * 28 26 25 46 46 H 1.09001 * 109.47482 * 180.02562 * 28 26 25 47 47 H 1.09002 * 109.46963 * 300.00189 * 28 26 25 48 48 H 1.08999 * 109.60817 * 170.50679 * 29 23 22 49 49 H 1.09002 * 109.60412 * 290.83824 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 4.2437 3.3176 -1.1848 8 1 3.9354 4.3430 -1.3256 9 6 4.9058 2.6449 -2.2044 10 7 4.8353 3.0895 -3.4390 11 14 5.8964 1.1084 -1.8203 12 1 5.0492 -0.0926 -2.0326 13 1 7.0788 1.0448 -2.7165 14 1 6.3486 1.1516 -0.4065 15 6 4.1064 3.3450 1.1656 16 8 3.9516 2.7606 2.2171 17 6 4.4381 4.8149 1.1623 18 1 5.1136 5.0375 0.3363 19 6 5.1017 5.1965 2.4879 20 6 4.0893 5.1562 3.5964 21 8 4.4915 5.1100 4.7396 22 7 2.7717 5.1680 3.3909 23 6 2.1503 5.1744 2.0724 24 1 1.8091 4.1671 1.8334 25 6 0.9514 6.1250 2.0831 26 6 -0.1179 5.5867 3.0357 27 6 -1.2651 6.5941 3.1363 28 6 -0.6528 4.2561 2.5025 29 6 3.1506 5.6344 1.0114 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.9558 0.7809 -0.8908 34 1 3.9564 0.7805 0.8891 35 1 5.2977 2.6201 -4.1507 36 1 5.9055 4.4934 2.7060 37 1 5.5136 6.2027 2.4102 38 1 2.1905 5.1727 4.1674 39 1 0.5379 6.1995 1.0774 40 1 1.2729 7.1113 2.4177 41 1 0.3186 5.4334 4.0227 42 1 -1.9873 6.2495 3.8765 43 1 -0.8710 7.5646 3.4375 44 1 -1.7543 6.6855 2.1666 45 1 0.1645 3.5385 2.4308 46 1 -1.4150 3.8728 3.1809 47 1 -1.0893 4.4094 1.5155 48 1 2.7300 5.4748 0.0185 49 1 3.3698 6.6931 1.1499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349129713.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:42 Heat of formation + Delta-G solvation = -178.737343 kcal Electronic energy + Delta-G solvation = -32994.823651 eV Core-core repulsion = 28728.277665 eV Total energy + Delta-G solvation = -4266.545986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 4.39 seconds Orbital eigenvalues (eV) -42.15440 -41.38741 -40.03795 -38.48820 -37.57671 -36.73331 -36.11874 -33.98828 -33.92776 -31.30941 -30.60422 -28.19038 -28.06709 -27.60663 -26.90014 -24.81828 -23.32515 -22.55944 -21.56585 -20.75831 -20.20653 -19.10810 -18.79914 -18.16041 -17.85886 -17.39606 -17.22747 -17.05694 -16.90051 -16.54262 -16.07885 -15.72762 -15.52755 -15.05803 -14.88473 -14.70890 -14.56948 -14.56140 -14.38527 -14.07778 -13.89665 -13.49291 -13.33195 -13.06763 -13.04379 -12.96014 -12.86282 -12.70153 -12.62288 -12.44416 -12.31629 -12.02479 -11.88846 -11.79553 -11.70590 -11.63770 -11.56986 -11.39252 -11.13719 -10.70013 -10.48569 -9.93618 -9.85162 -8.50104 -6.17369 1.14429 1.19221 1.33648 1.42611 1.48700 1.74966 1.97274 2.16201 2.41785 2.54189 2.96253 3.59165 3.63059 3.74763 3.83207 3.86300 3.93973 3.98360 4.04932 4.11078 4.18976 4.28717 4.29979 4.34768 4.42936 4.51298 4.63456 4.66715 4.72576 4.75955 4.78826 4.89618 4.92030 4.99813 5.04880 5.07590 5.10628 5.18381 5.25621 5.32045 5.33872 5.45426 5.46833 5.90015 6.07314 6.18212 6.46352 6.73929 6.91996 7.29282 7.31694 7.66561 8.62612 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010211 B = 0.005430 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.466131 B = 5154.906826 C = 6462.847094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.450 3.550 4 O -0.508 6.508 5 C 0.097 3.903 6 N -0.456 5.456 7 C -0.337 4.337 8 H 0.097 0.903 9 C 0.034 3.966 10 N -0.888 5.888 11 Si 0.904 3.096 12 H -0.256 1.256 13 H -0.280 1.280 14 H -0.259 1.259 15 C 0.496 3.504 16 O -0.602 6.602 17 C -0.096 4.096 18 H 0.120 0.880 19 C -0.113 4.113 20 C 0.535 3.465 21 O -0.616 6.616 22 N -0.694 5.694 23 C 0.139 3.861 24 H 0.055 0.945 25 C -0.116 4.116 26 C -0.096 4.096 27 C -0.139 4.139 28 C -0.143 4.143 29 C -0.109 4.109 30 H 0.059 0.941 31 H 0.136 0.864 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.281 0.719 36 H 0.088 0.912 37 H 0.137 0.863 38 H 0.394 0.606 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.029 0.971 46 H 0.060 0.940 47 H 0.053 0.947 48 H 0.082 0.918 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.809 2.577 5.022 10.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.286 6.286 3 C 0.291 3.709 4 O -0.395 6.395 5 C -0.028 4.028 6 N -0.177 5.177 7 C -0.464 4.464 8 H 0.114 0.886 9 C -0.171 4.171 10 N -0.524 5.524 11 Si 0.729 3.271 12 H -0.182 1.182 13 H -0.206 1.206 14 H -0.183 1.183 15 C 0.288 3.712 16 O -0.487 6.487 17 C -0.117 4.117 18 H 0.138 0.862 19 C -0.153 4.153 20 C 0.324 3.676 21 O -0.500 6.500 22 N -0.344 5.344 23 C 0.035 3.965 24 H 0.073 0.927 25 C -0.154 4.154 26 C -0.114 4.114 27 C -0.197 4.197 28 C -0.200 4.200 29 C -0.147 4.147 30 H 0.078 0.922 31 H 0.154 0.846 32 H 0.077 0.923 33 H 0.124 0.876 34 H 0.134 0.866 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.155 0.845 38 H 0.230 0.770 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.048 0.952 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.101 0.899 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.743 2.534 5.668 10.723 hybrid contribution 0.093 -1.147 -0.236 1.175 sum -8.651 1.387 5.432 10.308 Atomic orbital electron populations 1.23517 0.74880 1.05653 1.02229 1.86493 1.25142 1.32799 1.84211 1.24516 0.92658 0.81776 0.71956 1.90568 1.66930 1.36900 1.45072 1.21416 0.87897 0.88311 1.05182 1.43434 1.59167 1.08545 1.06594 1.18998 1.37539 0.99926 0.89918 0.88575 1.25822 0.96519 1.00299 0.94494 1.69783 1.40457 1.42194 1.00010 0.86466 0.79984 0.80938 0.79667 1.18168 1.20578 1.18257 1.20897 0.77558 0.90454 0.82320 1.90596 1.55602 1.70503 1.31971 1.21266 1.00147 0.90902 0.99420 0.86166 1.21540 0.96959 1.05747 0.91019 1.20219 0.84072 0.73239 0.90027 1.90650 1.79818 1.54262 1.25267 1.45406 1.06151 1.73297 1.09556 1.21061 0.93663 0.99878 0.81923 0.92730 1.21979 0.93546 0.98562 1.01272 1.21102 0.96260 0.95589 0.98482 1.21776 0.97258 0.98450 1.02177 1.21815 1.00189 0.96928 1.01053 1.21801 0.92997 1.00619 0.99311 0.92215 0.84631 0.92309 0.87602 0.86632 0.90940 0.89341 0.84505 0.77033 0.90021 0.89549 0.91875 0.92150 0.91735 0.92322 0.95200 0.92074 0.92786 0.89902 0.87288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.96 16 2 O -0.37 -12.68 10.57 -51.36 -0.54 -13.22 16 3 C 0.45 18.33 8.00 71.24 0.57 18.90 16 4 O -0.51 -22.30 16.09 21.97 0.35 -21.95 16 5 C 0.10 4.07 4.65 85.63 0.40 4.47 16 6 N -0.46 -20.23 1.67 -639.62 -1.07 -21.30 16 7 C -0.34 -15.94 8.66 84.04 0.73 -15.21 16 8 H 0.10 4.74 6.39 -2.91 -0.02 4.73 16 9 C 0.03 1.64 5.33 84.92 0.45 2.09 16 10 N -0.89 -45.64 13.96 21.66 0.30 -45.34 16 11 Si 0.90 37.57 24.94 68.60 1.71 39.28 16 12 H -0.26 -9.95 6.66 99.48 0.66 -9.29 16 13 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 14 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 15 C 0.50 21.14 5.36 87.66 0.47 21.61 16 16 O -0.60 -28.23 14.15 -3.07 -0.04 -28.28 16 17 C -0.10 -3.33 2.25 -11.40 -0.03 -3.35 16 18 H 0.12 4.10 6.98 -2.39 -0.02 4.08 16 19 C -0.11 -3.66 5.22 29.71 0.16 -3.50 16 20 C 0.54 19.75 6.38 87.71 0.56 20.31 16 21 O -0.62 -26.97 17.78 -3.03 -0.05 -27.02 16 22 N -0.69 -22.40 4.91 -446.64 -2.19 -24.59 16 23 C 0.14 4.22 2.24 45.10 0.10 4.33 16 24 H 0.05 2.09 5.35 -2.38 -0.01 2.08 16 25 C -0.12 -2.66 4.32 30.59 0.13 -2.53 16 26 C -0.10 -2.07 2.85 -10.79 -0.03 -2.11 16 27 C -0.14 -2.35 9.19 71.98 0.66 -1.69 16 28 C -0.14 -3.59 8.95 71.98 0.64 -2.95 16 29 C -0.11 -3.26 4.86 30.68 0.15 -3.11 16 30 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 31 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 33 H 0.11 4.39 3.41 -2.39 -0.01 4.38 16 34 H 0.12 4.64 7.47 -2.39 -0.02 4.63 16 35 H 0.28 13.51 8.31 -92.71 -0.77 12.74 16 36 H 0.09 3.09 8.10 -2.39 -0.02 3.08 16 37 H 0.14 3.35 8.14 -2.38 -0.02 3.33 16 38 H 0.39 12.01 6.96 -92.71 -0.65 11.36 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.06 1.40 6.52 -2.39 -0.02 1.39 16 42 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.03 0.94 6.44 -2.39 -0.02 0.92 16 46 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.08 2.72 7.21 -2.39 -0.02 2.71 16 49 H 0.11 2.51 8.11 -2.39 -0.02 2.49 16 Total: -1.00 -66.18 384.55 4.91 -61.27 By element: Atomic # 1 Polarization: 41.64 SS G_CDS: 0.29 Total: 41.93 kcal Atomic # 6 Polarization: 33.06 SS G_CDS: 6.16 Total: 39.22 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -2.96 Total: -91.23 kcal Atomic # 8 Polarization: -90.18 SS G_CDS: -0.29 Total: -90.47 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 1.71 Total: 39.28 kcal Total: -66.18 4.91 -61.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349129713.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.472 kcal (2) G-P(sol) polarization free energy of solvation -66.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.39 seconds