Wall clock time and date at job start Sat Apr 11 2020 06:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46905 * 110.99791 * 2 1 4 4 C 1.46894 * 111.00355 * 123.95533 * 2 1 3 5 5 C 1.52995 * 109.47357 * 66.04967 * 4 2 1 6 6 C 1.53002 * 109.47427 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47088 * 179.97438 * 6 5 4 8 8 C 1.46506 * 119.99537 * 269.99330 * 7 6 5 9 9 C 1.50699 * 109.47106 * 270.00004 * 8 7 6 10 10 H 1.07999 * 120.00463 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99855 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99839 * 359.97438 * 11 9 8 13 13 Si 1.86790 * 120.00004 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47491 * 89.99593 * 13 11 9 15 15 H 1.48506 * 109.47242 * 209.99859 * 13 11 9 16 16 H 1.48501 * 109.47340 * 329.99588 * 13 11 9 17 17 C 1.34777 * 120.00199 * 89.99979 * 7 6 5 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 7 6 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 7 6 20 20 N 1.46491 * 109.46957 * 179.72354 * 19 17 7 21 21 C 1.34433 * 126.82444 * 124.99999 * 20 19 17 22 22 N 1.30834 * 108.07712 * 179.97438 * 21 20 19 23 23 C 1.33241 * 109.83006 * 0.02562 * 22 21 20 24 24 N 1.48023 * 125.52605 * 180.02562 * 23 22 21 25 25 O 1.21802 * 120.00034 * 359.97438 * 24 23 22 26 26 O 1.21797 * 120.00077 * 179.97438 * 24 23 22 27 27 N 1.30717 * 108.94661 * 359.70930 * 23 22 21 28 28 H 1.09002 * 109.47091 * 296.03896 * 1 2 3 29 29 H 1.08998 * 109.47672 * 56.04726 * 1 2 3 30 30 H 1.09005 * 109.47066 * 176.05092 * 1 2 3 31 31 H 1.08991 * 109.47299 * 183.95987 * 3 2 1 32 32 H 1.09004 * 109.46995 * 303.96018 * 3 2 1 33 33 H 1.08995 * 109.46972 * 63.95357 * 3 2 1 34 34 H 1.09006 * 109.47229 * 306.04487 * 4 2 1 35 35 H 1.09005 * 109.46948 * 186.04692 * 4 2 1 36 36 H 1.08999 * 109.46986 * 59.99459 * 5 4 2 37 37 H 1.09005 * 109.46868 * 299.99774 * 5 4 2 38 38 H 1.09001 * 109.46980 * 59.99515 * 6 5 4 39 39 H 1.09005 * 109.46685 * 299.99608 * 6 5 4 40 40 H 1.08994 * 109.46996 * 30.00327 * 8 7 6 41 41 H 1.09001 * 109.46578 * 150.00190 * 8 7 6 42 42 H 0.96999 * 119.99754 * 180.02562 * 12 11 9 43 43 H 1.09004 * 109.46965 * 299.72211 * 19 17 7 44 44 H 1.08994 * 109.46990 * 59.72065 * 19 17 7 45 45 H 1.08000 * 125.95831 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6316 -2.2426 0.9702 6 6 2.1795 -3.0403 2.1553 7 7 1.8305 -4.4541 1.9954 8 6 0.5736 -4.9653 2.5478 9 6 0.8020 -5.4415 3.9592 10 1 1.7849 -5.3702 4.4008 11 6 -0.2441 -5.9684 4.6868 12 7 -1.4412 -6.0548 4.1491 13 14 0.0388 -6.5580 6.4364 14 1 -0.1954 -5.4362 7.3809 15 1 -0.8998 -7.6673 6.7429 16 1 1.4366 -7.0394 6.5767 17 6 2.6659 -5.2845 1.3403 18 8 3.7063 -4.8611 0.8828 19 6 2.3040 -6.7375 1.1705 20 7 3.3635 -7.4206 0.4244 21 6 4.0412 -8.5164 0.8081 22 7 4.8999 -8.8131 -0.1334 23 6 4.8008 -7.9334 -1.1291 24 7 5.6092 -7.9430 -2.3691 25 8 6.4499 -8.8074 -2.5413 26 8 5.4337 -7.0866 -3.2172 27 7 3.8692 -7.0643 -0.8365 28 1 -0.3633 0.4511 0.9234 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3633 -1.0253 -0.0708 31 1 3.0826 1.3434 -0.0710 32 1 1.5896 1.9164 -0.8524 33 1 1.7043 1.8724 0.9233 34 1 1.5612 -0.3872 2.0628 35 1 3.0798 -0.6610 1.1755 36 1 2.0659 -2.6212 0.0450 37 1 0.5473 -2.3475 0.9323 38 1 1.7448 -2.6614 3.0803 39 1 3.2638 -2.9354 2.1937 40 1 -0.1726 -4.1708 2.5486 41 1 0.2195 -5.7957 1.9369 42 1 -2.1772 -6.4251 4.6611 43 1 2.1928 -7.2012 2.1507 44 1 1.3650 -6.8164 0.6227 45 1 3.9007 -9.0578 1.7320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354896489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:05 Heat of formation + Delta-G solvation = 76.726127 kcal Electronic energy + Delta-G solvation = -29688.498799 eV Core-core repulsion = 25361.782948 eV Total energy + Delta-G solvation = -4326.715851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.169 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -42.96442 -41.91225 -39.55977 -37.69333 -36.72286 -35.59237 -34.45966 -33.14551 -32.07372 -31.81637 -29.20040 -27.75198 -27.60446 -27.01700 -25.61632 -23.34503 -23.13559 -22.38664 -22.05928 -20.76036 -19.21242 -19.05019 -18.73487 -17.94270 -17.12948 -17.02975 -16.67108 -15.91142 -15.65895 -15.44654 -15.29039 -15.14736 -14.73227 -14.59600 -14.44817 -13.91516 -13.24073 -13.04235 -12.67054 -12.47248 -12.30869 -12.14872 -11.90979 -11.82597 -11.75577 -11.73058 -11.57696 -11.38711 -11.29980 -11.26558 -11.16608 -11.01654 -10.73156 -10.64801 -10.47944 -10.43730 -10.28882 -10.04674 -9.45311 -8.85420 -8.41118 -8.10228 -6.47864 -4.58769 -0.04574 0.49889 1.24294 1.92887 2.35922 2.85410 3.02811 3.12276 3.13232 3.36470 3.82976 3.96484 4.07265 4.25007 4.72879 4.83691 4.88121 4.98856 5.05142 5.08389 5.13710 5.19931 5.31402 5.46138 5.51232 5.55832 5.56078 5.64568 5.73951 5.76665 5.89824 5.99000 6.04010 6.20854 6.28160 6.37881 6.50006 6.79691 6.96954 6.99163 7.02640 7.14560 7.45540 7.68830 7.70072 7.89529 8.40248 8.57062 9.12018 10.58239 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.006192 B = 0.004062 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4521.093168 B = 6891.429734 C =10864.989473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.548 5.548 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.130 4.130 6 C 0.125 3.875 7 N -0.585 5.585 8 C 0.232 3.768 9 C -0.552 4.552 10 H 0.064 0.936 11 C 0.070 3.930 12 N -0.885 5.885 13 Si 0.897 3.103 14 H -0.278 1.278 15 H -0.283 1.283 16 H -0.272 1.272 17 C 0.505 3.495 18 O -0.546 6.546 19 C 0.104 3.896 20 N -0.326 5.326 21 C 0.285 3.715 22 N -0.500 5.500 23 C 0.258 3.742 24 N 0.067 4.933 25 O -0.106 6.106 26 O -0.115 6.115 27 N -0.186 5.186 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.037 0.963 42 H 0.269 0.731 43 H 0.157 0.843 44 H 0.130 0.870 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.761 3.273 -3.537 5.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.168 4.168 6 C 0.001 3.999 7 N -0.315 5.315 8 C 0.112 3.888 9 C -0.591 4.591 10 H 0.082 0.918 11 C -0.135 4.135 12 N -0.522 5.522 13 Si 0.724 3.276 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.197 1.197 17 C 0.290 3.710 18 O -0.425 6.425 19 C -0.019 4.019 20 N -0.120 5.120 21 C -0.011 4.011 22 N -0.231 5.231 23 C -0.102 4.102 24 N 0.598 4.402 25 O -0.328 6.328 26 O -0.334 6.334 27 N -0.027 5.027 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.079 0.921 43 H 0.175 0.825 44 H 0.148 0.852 45 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 2.843 3.566 -4.014 6.076 hybrid contribution -0.466 0.088 1.963 2.019 sum 2.378 3.654 -2.052 4.818 Atomic orbital electron populations 1.22442 0.87360 1.02735 1.00162 1.61957 1.08123 1.13507 1.43618 1.22367 1.00770 0.88959 1.00228 1.22056 1.00106 0.93751 0.90987 1.21939 1.01596 0.93467 0.99846 1.21261 1.00692 0.80185 0.97787 1.48128 1.22246 1.08198 1.52945 1.19564 0.79689 0.95598 0.93907 1.21468 0.96420 1.42882 0.98305 0.91811 1.24953 0.94791 0.95152 0.98606 1.69907 1.00565 1.44097 1.37652 0.86501 0.78329 0.78686 0.84040 1.20358 1.20887 1.19657 1.19959 0.84490 0.87174 0.79423 1.90743 1.25020 1.77001 1.49695 1.22245 0.87747 0.93587 0.98352 1.50452 1.28647 1.21031 1.11906 1.26358 0.87676 0.87717 0.99330 1.69974 1.24535 1.27543 1.01059 1.23909 0.98326 0.96186 0.91738 1.41683 0.99300 1.00282 0.98959 1.94606 1.25211 1.30687 1.82275 1.94648 1.72490 1.31680 1.34556 1.78341 1.10204 1.17273 0.96842 0.95654 0.91682 0.90798 0.91416 0.91542 0.95826 0.94662 0.90763 0.90905 0.91576 0.90120 0.90820 0.93928 0.94542 0.92146 0.82530 0.85185 0.73800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.32 60.06 0.56 0.80 16 2 N -0.55 -6.83 5.02 -251.26 -1.26 -8.09 16 3 C 0.03 0.25 9.57 60.07 0.57 0.83 16 4 C 0.06 0.76 4.96 -3.83 -0.02 0.74 16 5 C -0.13 -1.89 5.46 -26.73 -0.15 -2.04 16 6 C 0.12 1.98 5.41 -4.04 -0.02 1.96 16 7 N -0.58 -10.18 2.46 -175.05 -0.43 -10.61 16 8 C 0.23 4.49 4.97 -5.19 -0.03 4.46 16 9 C -0.55 -11.95 9.30 -34.44 -0.32 -12.27 16 10 H 0.06 1.41 7.81 -52.49 -0.41 1.00 16 11 C 0.07 1.58 5.46 -17.82 -0.10 1.48 16 12 N -0.89 -21.31 13.29 55.43 0.74 -20.58 16 13 Si 0.90 17.94 29.54 -169.99 -5.02 12.91 16 14 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 15 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 16 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 17 C 0.50 8.79 7.71 -10.98 -0.08 8.70 16 18 O -0.55 -11.17 15.33 5.55 0.09 -11.09 16 19 C 0.10 1.43 5.58 -5.20 -0.03 1.40 16 20 N -0.33 -4.71 3.40 -63.82 -0.22 -4.92 16 21 C 0.29 3.40 12.63 -90.65 -1.14 2.26 16 22 N -0.50 -7.61 11.15 -12.81 -0.14 -7.76 16 23 C 0.26 4.43 9.01 -308.63 -2.78 1.65 16 24 N 0.07 1.15 4.45 31.81 0.14 1.30 16 25 O -0.11 -1.76 19.23 -29.46 -0.57 -2.32 16 26 O -0.12 -2.00 19.22 -29.46 -0.57 -2.57 16 27 N -0.19 -3.28 11.79 31.75 0.37 -2.90 16 28 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 30 H 0.07 0.88 6.47 -51.93 -0.34 0.54 16 31 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 32 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 33 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 35 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 0.98 6.55 -51.93 -0.34 0.64 16 38 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 39 H 0.07 1.21 7.42 -51.93 -0.39 0.83 16 40 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 41 H 0.04 0.70 6.43 -51.93 -0.33 0.36 16 42 H 0.27 6.24 8.31 -40.82 -0.34 5.90 16 43 H 0.16 1.84 7.97 -51.93 -0.41 1.42 16 44 H 0.13 1.62 7.40 -51.93 -0.38 1.24 16 45 H 0.25 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 393.13 15.07 5.92 5.92 Total: -1.00 -29.50 393.13 -10.85 -40.35 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.37 Total: 0.38 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: -3.53 Total: 9.97 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.80 Total: -53.57 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -1.05 Total: -15.97 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.02 Total: 12.91 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.50 -10.85 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354896489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.074 kcal (2) G-P(sol) polarization free energy of solvation -29.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds