Wall clock time and date at job start Sat Apr 11 2020 06:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46905 * 110.99791 * 2 1 4 4 C 1.46894 * 111.00355 * 123.95533 * 2 1 3 5 5 C 1.52995 * 109.47357 * 66.04967 * 4 2 1 6 6 C 1.53002 * 109.47427 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47088 * 179.97438 * 6 5 4 8 8 C 1.46506 * 119.99537 * 269.99330 * 7 6 5 9 9 C 1.50699 * 109.47106 * 270.00004 * 8 7 6 10 10 H 1.07999 * 120.00463 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99855 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99839 * 359.97438 * 11 9 8 13 13 Si 1.86790 * 120.00004 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47491 * 89.99593 * 13 11 9 15 15 H 1.48506 * 109.47242 * 209.99859 * 13 11 9 16 16 H 1.48501 * 109.47340 * 329.99588 * 13 11 9 17 17 C 1.34777 * 120.00199 * 89.99979 * 7 6 5 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 7 6 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 7 6 20 20 N 1.46491 * 109.46957 * 179.72354 * 19 17 7 21 21 C 1.34433 * 126.82444 * 124.99999 * 20 19 17 22 22 N 1.30834 * 108.07712 * 179.97438 * 21 20 19 23 23 C 1.33241 * 109.83006 * 0.02562 * 22 21 20 24 24 N 1.48023 * 125.52605 * 180.02562 * 23 22 21 25 25 O 1.21802 * 120.00034 * 359.97438 * 24 23 22 26 26 O 1.21797 * 120.00077 * 179.97438 * 24 23 22 27 27 N 1.30717 * 108.94661 * 359.70930 * 23 22 21 28 28 H 1.09002 * 109.47091 * 296.03896 * 1 2 3 29 29 H 1.08998 * 109.47672 * 56.04726 * 1 2 3 30 30 H 1.09005 * 109.47066 * 176.05092 * 1 2 3 31 31 H 1.08991 * 109.47299 * 183.95987 * 3 2 1 32 32 H 1.09004 * 109.46995 * 303.96018 * 3 2 1 33 33 H 1.08995 * 109.46972 * 63.95357 * 3 2 1 34 34 H 1.09006 * 109.47229 * 306.04487 * 4 2 1 35 35 H 1.09005 * 109.46948 * 186.04692 * 4 2 1 36 36 H 1.08999 * 109.46986 * 59.99459 * 5 4 2 37 37 H 1.09005 * 109.46868 * 299.99774 * 5 4 2 38 38 H 1.09001 * 109.46980 * 59.99515 * 6 5 4 39 39 H 1.09005 * 109.46685 * 299.99608 * 6 5 4 40 40 H 1.08994 * 109.46996 * 30.00327 * 8 7 6 41 41 H 1.09001 * 109.46578 * 150.00190 * 8 7 6 42 42 H 0.96999 * 119.99754 * 180.02562 * 12 11 9 43 43 H 1.09004 * 109.46965 * 299.72211 * 19 17 7 44 44 H 1.08994 * 109.46990 * 59.72065 * 19 17 7 45 45 H 1.08000 * 125.95831 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6316 -2.2426 0.9702 6 6 2.1795 -3.0403 2.1553 7 7 1.8305 -4.4541 1.9954 8 6 0.5736 -4.9653 2.5478 9 6 0.8020 -5.4415 3.9592 10 1 1.7849 -5.3702 4.4008 11 6 -0.2441 -5.9684 4.6868 12 7 -1.4412 -6.0548 4.1491 13 14 0.0388 -6.5580 6.4364 14 1 -0.1954 -5.4362 7.3809 15 1 -0.8998 -7.6673 6.7429 16 1 1.4366 -7.0394 6.5767 17 6 2.6659 -5.2845 1.3403 18 8 3.7063 -4.8611 0.8828 19 6 2.3040 -6.7375 1.1705 20 7 3.3635 -7.4206 0.4244 21 6 4.0412 -8.5164 0.8081 22 7 4.8999 -8.8131 -0.1334 23 6 4.8008 -7.9334 -1.1291 24 7 5.6092 -7.9430 -2.3691 25 8 6.4499 -8.8074 -2.5413 26 8 5.4337 -7.0866 -3.2172 27 7 3.8692 -7.0643 -0.8365 28 1 -0.3633 0.4511 0.9234 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3633 -1.0253 -0.0708 31 1 3.0826 1.3434 -0.0710 32 1 1.5896 1.9164 -0.8524 33 1 1.7043 1.8724 0.9233 34 1 1.5612 -0.3872 2.0628 35 1 3.0798 -0.6610 1.1755 36 1 2.0659 -2.6212 0.0450 37 1 0.5473 -2.3475 0.9323 38 1 1.7448 -2.6614 3.0803 39 1 3.2638 -2.9354 2.1937 40 1 -0.1726 -4.1708 2.5486 41 1 0.2195 -5.7957 1.9369 42 1 -2.1772 -6.4251 4.6611 43 1 2.1928 -7.2012 2.1507 44 1 1.3650 -6.8164 0.6227 45 1 3.9007 -9.0578 1.7320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354896489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:03 Heat of formation + Delta-G solvation = 62.260945 kcal Electronic energy + Delta-G solvation = -29689.126056 eV Core-core repulsion = 25361.782948 eV Total energy + Delta-G solvation = -4327.343108 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.169 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.14250 -43.19243 -40.95187 -38.70640 -38.04390 -37.01447 -35.66802 -34.73883 -33.24067 -33.11270 -30.40772 -29.26585 -28.51757 -28.27500 -26.77369 -24.94998 -24.23266 -23.52883 -23.27467 -21.83536 -20.44844 -20.38758 -20.05047 -19.25013 -18.63419 -18.39510 -18.05117 -17.12107 -16.82012 -16.57228 -16.38699 -16.28383 -16.20639 -15.74578 -15.55163 -15.02487 -14.51391 -14.44482 -14.11563 -13.59662 -13.44920 -13.31303 -13.17602 -13.14950 -13.08492 -12.88369 -12.74134 -12.66556 -12.59956 -12.59768 -12.43000 -12.37537 -12.07896 -11.90191 -11.79906 -11.68445 -11.61549 -11.52980 -10.86334 -10.56135 -9.58805 -9.34285 -8.20005 -6.35000 -1.34379 -0.73752 0.14251 0.83737 1.20137 1.45814 1.48071 1.53984 1.58385 2.06665 2.43651 2.74576 3.00216 3.12607 3.26132 3.46311 3.81510 3.88623 3.93566 4.07103 4.10375 4.19843 4.35198 4.40200 4.42777 4.47637 4.58199 4.63134 4.70967 4.76114 4.82066 4.84989 4.97463 4.98852 5.08498 5.15415 5.20579 5.26388 5.63005 5.75998 5.84886 6.02036 6.03224 6.08438 6.43717 6.44381 6.77484 7.10292 7.39354 8.85107 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.006192 B = 0.004062 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4521.093168 B = 6891.429734 C =10864.989473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.567 5.567 3 C 0.025 3.975 4 C 0.065 3.935 5 C -0.114 4.114 6 C 0.124 3.876 7 N -0.586 5.586 8 C 0.245 3.755 9 C -0.548 4.548 10 H 0.061 0.939 11 C 0.033 3.967 12 N -0.915 5.915 13 Si 0.949 3.051 14 H -0.286 1.286 15 H -0.285 1.285 16 H -0.263 1.263 17 C 0.500 3.500 18 O -0.579 6.579 19 C 0.111 3.889 20 N -0.330 5.330 21 C 0.309 3.691 22 N -0.518 5.518 23 C 0.248 3.752 24 N 0.065 4.935 25 O -0.093 6.093 26 O -0.141 6.141 27 N -0.224 5.224 28 H 0.029 0.971 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.031 0.969 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.024 0.976 41 H 0.044 0.956 42 H 0.268 0.732 43 H 0.185 0.815 44 H 0.144 0.856 45 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.712 2.689 -2.142 4.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.292 5.292 3 C -0.123 4.123 4 C -0.063 4.063 5 C -0.153 4.153 6 C 0.001 3.999 7 N -0.316 5.316 8 C 0.125 3.875 9 C -0.587 4.587 10 H 0.079 0.921 11 C -0.169 4.169 12 N -0.553 5.553 13 Si 0.776 3.224 14 H -0.212 1.212 15 H -0.211 1.211 16 H -0.187 1.187 17 C 0.286 3.714 18 O -0.460 6.460 19 C -0.012 4.012 20 N -0.124 5.124 21 C 0.015 3.985 22 N -0.250 5.250 23 C -0.111 4.111 24 N 0.594 4.406 25 O -0.319 6.319 26 O -0.353 6.353 27 N -0.065 5.065 28 H 0.048 0.952 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.202 0.798 44 H 0.161 0.839 45 H 0.319 0.681 Dipole moment (debyes) X Y Z Total from point charges 2.778 3.036 -2.645 4.892 hybrid contribution -0.435 0.273 1.572 1.654 sum 2.343 3.309 -1.073 4.194 Atomic orbital electron populations 1.22443 0.86784 1.02311 1.01050 1.61949 1.08852 1.14939 1.43417 1.22415 1.00938 0.87752 1.01164 1.21959 1.00245 0.92500 0.91638 1.21751 1.00891 0.94660 0.98007 1.21305 1.00308 0.79909 0.98399 1.48136 1.21758 1.08850 1.52837 1.19296 0.79871 0.95039 0.93303 1.21639 0.96032 1.41928 0.99079 0.92109 1.25508 0.94621 0.95506 1.01260 1.69988 1.01212 1.45340 1.38786 0.85685 0.78474 0.77773 0.80503 1.21247 1.21098 1.18686 1.20532 0.83765 0.88623 0.78435 1.90733 1.26397 1.78004 1.50883 1.22345 0.87953 0.91192 0.99726 1.50485 1.29024 1.21762 1.11097 1.27571 0.85043 0.86213 0.99681 1.70009 1.25964 1.27692 1.01357 1.23938 0.98503 0.96816 0.91892 1.41770 0.99396 1.00184 0.99264 1.94574 1.24854 1.30247 1.82226 1.94645 1.73197 1.32209 1.35231 1.78255 1.11059 1.18378 0.98815 0.95199 0.90241 0.91988 0.91198 0.90305 0.95082 0.93931 0.90664 0.93299 0.91975 0.89893 0.91457 0.95806 0.93831 0.92302 0.79753 0.83862 0.68126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.32 127.69 1.19 1.67 16 2 N -0.57 -13.72 5.02 -948.86 -4.76 -18.48 16 3 C 0.03 0.47 9.57 127.69 1.22 1.69 16 4 C 0.07 1.64 4.96 86.30 0.43 2.07 16 5 C -0.11 -3.37 5.46 30.59 0.17 -3.21 16 6 C 0.12 3.96 5.41 86.38 0.47 4.42 16 7 N -0.59 -20.06 2.46 -826.14 -2.03 -22.09 16 8 C 0.25 9.25 4.97 85.63 0.43 9.68 16 9 C -0.55 -22.80 9.30 25.60 0.24 -22.56 16 10 H 0.06 2.55 7.81 -2.91 -0.02 2.53 16 11 C 0.03 1.43 5.46 84.66 0.46 1.90 16 12 N -0.91 -43.12 13.29 21.45 0.28 -42.83 16 13 Si 0.95 35.40 29.54 68.60 2.03 37.43 16 14 H -0.29 -11.01 7.11 99.48 0.71 -10.30 16 15 H -0.29 -10.68 7.11 99.48 0.71 -9.97 16 16 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 17 C 0.50 16.98 7.71 87.66 0.68 17.66 16 18 O -0.58 -23.70 15.33 -3.04 -0.05 -23.75 16 19 C 0.11 2.80 5.58 85.64 0.48 3.28 16 20 N -0.33 -8.86 3.40 -355.82 -1.21 -10.07 16 21 C 0.31 6.38 12.63 180.36 2.28 8.66 16 22 N -0.52 -14.80 11.15 -194.43 -2.17 -16.97 16 23 C 0.25 8.39 9.01 256.53 2.31 10.70 16 24 N 0.06 2.24 4.45 -53.26 -0.24 2.00 16 25 O -0.09 -3.04 19.23 18.88 0.36 -2.68 16 26 O -0.14 -5.02 19.22 18.89 0.36 -4.65 16 27 N -0.22 -7.81 11.79 -53.46 -0.63 -8.44 16 28 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 1.46 8.12 -2.39 -0.02 1.45 16 30 H 0.06 1.47 6.47 -2.38 -0.02 1.45 16 31 H 0.07 1.27 8.12 -2.39 -0.02 1.25 16 32 H 0.08 1.27 8.12 -2.39 -0.02 1.25 16 33 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.04 1.01 8.12 -2.38 -0.02 0.99 16 35 H 0.07 1.86 8.06 -2.38 -0.02 1.84 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.87 6.55 -2.38 -0.02 1.85 16 38 H 0.08 2.58 8.07 -2.39 -0.02 2.56 16 39 H 0.07 2.23 7.42 -2.38 -0.02 2.21 16 40 H 0.02 1.00 8.07 -2.39 -0.02 0.98 16 41 H 0.04 1.60 6.43 -2.39 -0.02 1.59 16 42 H 0.27 12.21 8.31 -92.71 -0.77 11.44 16 43 H 0.19 3.65 7.97 -2.38 -0.02 3.63 16 44 H 0.14 3.28 7.40 -2.39 -0.02 3.26 16 45 H 0.30 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -63.74 393.13 3.31 -60.43 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 1.01 Total: 14.16 kcal Atomic # 6 Polarization: 25.61 SS G_CDS: 10.34 Total: 35.95 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -10.75 Total: -116.89 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: 0.68 Total: -31.08 kcal Atomic # 14 Polarization: 35.40 SS G_CDS: 2.03 Total: 37.43 kcal Total: -63.74 3.31 -60.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354896489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.690 kcal (2) G-P(sol) polarization free energy of solvation -63.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds