Wall clock time and date at job start Sat Apr 11 2020 06:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 117.00191 * 2 1 4 4 O 1.20826 * 119.99591 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00141 * 179.97438 * 3 2 1 6 6 C 1.53002 * 110.28978 * 300.69859 * 5 3 2 7 7 C 1.54620 * 110.32656 * 178.56720 * 5 3 2 8 8 C 1.55116 * 102.75447 * 219.31608 * 7 5 3 9 9 N 1.48114 * 103.31833 * 37.26823 * 8 7 5 10 10 C 1.34774 * 127.03937 * 140.79685 * 9 8 7 11 11 O 1.21347 * 120.00092 * 179.97438 * 10 9 8 12 12 C 1.49443 * 119.99787 * 359.95807 * 10 9 8 13 13 O 1.21352 * 120.00501 * 359.97438 * 12 10 9 14 14 N 1.34779 * 120.00118 * 179.97438 * 12 10 9 15 15 C 1.46496 * 120.00278 * 179.97438 * 14 12 10 16 16 C 1.52999 * 109.47355 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47511 * 300.00713 * 16 15 14 18 18 C 1.53007 * 109.46588 * 60.00564 * 16 15 14 19 19 C 1.50695 * 109.47538 * 180.02562 * 16 15 14 20 20 H 1.08005 * 119.99794 * 357.01104 * 19 16 15 21 21 C 1.37876 * 120.00367 * 177.00966 * 19 16 15 22 22 N 1.31508 * 119.99965 * 5.54215 * 21 19 16 23 23 Si 1.86805 * 120.00287 * 185.54474 * 21 19 16 24 24 H 1.48496 * 109.46939 * 84.99450 * 23 21 19 25 25 H 1.48495 * 109.47322 * 205.00163 * 23 21 19 26 26 H 1.48498 * 109.46972 * 325.00021 * 23 21 19 27 27 C 1.47493 * 105.92811 * 320.75811 * 9 8 7 28 28 H 1.09001 * 109.47051 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47560 * 300.00492 * 1 2 3 30 30 H 1.09010 * 109.46885 * 60.00322 * 1 2 3 31 31 H 1.08999 * 109.46989 * 59.29856 * 6 5 3 32 32 H 1.09002 * 109.47390 * 179.30311 * 6 5 3 33 33 H 1.09006 * 109.47018 * 299.29722 * 6 5 3 34 34 H 1.09001 * 110.73996 * 337.58806 * 7 5 3 35 35 H 1.08997 * 110.74257 * 100.92215 * 7 5 3 36 36 H 1.08996 * 110.59223 * 278.82121 * 8 7 5 37 37 H 1.09009 * 110.82004 * 155.81335 * 8 7 5 38 38 H 0.97002 * 119.99588 * 0.02562 * 14 12 10 39 39 H 1.09000 * 109.47618 * 300.00780 * 15 14 12 40 40 H 1.09005 * 109.46680 * 60.00506 * 15 14 12 41 41 H 1.08998 * 109.46867 * 53.93110 * 17 16 15 42 42 H 1.08999 * 109.47265 * 173.92902 * 17 16 15 43 43 H 1.08997 * 109.46777 * 293.93021 * 17 16 15 44 44 H 1.08999 * 109.47330 * 60.00426 * 18 16 15 45 45 H 1.09002 * 109.46548 * 179.97438 * 18 16 15 46 46 H 1.08995 * 109.46964 * 299.99748 * 18 16 15 47 47 H 0.96998 * 120.00401 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.91526 * 266.08842 * 27 9 8 49 49 H 1.09000 * 109.91301 * 144.80921 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1340 0.5712 1.2349 7 6 4.0269 2.7504 -0.0358 8 6 5.2478 2.7046 -0.9914 9 7 4.8437 1.7122 -2.0140 10 6 5.0762 1.7724 -3.3402 11 8 4.6853 0.8817 -4.0657 12 6 5.8151 2.9362 -3.9171 13 8 6.2054 3.8273 -3.1917 14 7 6.0481 2.9962 -5.2433 15 6 6.7719 4.1373 -5.8090 16 6 6.9009 3.9597 -7.3232 17 6 7.6681 2.6701 -7.6219 18 6 5.5064 3.8799 -7.9478 19 6 7.6460 5.1332 -7.9050 20 1 7.9506 5.9496 -7.2669 21 6 7.9389 5.1647 -9.2520 22 7 7.4749 4.2262 -10.0479 23 14 8.9949 6.5403 -9.9463 24 1 10.4295 6.1913 -9.7876 25 1 8.6861 6.7222 -11.3874 26 1 8.7085 7.8010 -9.2158 27 6 4.1357 0.6441 -1.2838 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 3.8221 -0.4732 1.2334 32 1 5.2225 0.6254 1.2156 33 1 3.7618 1.0602 2.1352 34 1 3.2429 3.3895 -0.4420 35 1 4.3245 3.0865 0.9574 36 1 6.1382 2.3686 -0.4600 37 1 5.4191 3.6794 -1.4482 38 1 5.7358 2.2841 -5.8232 39 1 6.2256 5.0561 -5.5958 40 1 7.7655 4.1939 -5.3643 41 1 7.1885 1.8353 -7.1108 42 1 7.6669 2.4872 -8.6965 43 1 8.6954 2.7690 -7.2713 44 1 4.9598 4.7986 -7.7350 45 1 5.5983 3.7538 -9.0266 46 1 4.9678 3.0309 -7.5269 47 1 7.6806 4.2485 -10.9955 48 1 4.8314 -0.1551 -1.0282 49 1 3.3238 0.2513 -1.8959 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422479811.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:02 Heat of formation + Delta-G solvation = -148.197008 kcal Electronic energy + Delta-G solvation = -30516.121095 eV Core-core repulsion = 26250.899438 eV Total energy + Delta-G solvation = -4265.221658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.43232 -40.38766 -38.81356 -37.77342 -36.75837 -36.47012 -33.74511 -33.07859 -30.90866 -30.02418 -28.11970 -27.72963 -26.13078 -25.73490 -25.32585 -24.64743 -22.93781 -22.35668 -20.06885 -19.86567 -18.85699 -17.83012 -17.61739 -17.15567 -16.80623 -16.65790 -16.11930 -15.87239 -15.23888 -15.02751 -14.77095 -14.47173 -14.29131 -13.90071 -13.77060 -13.36884 -13.22585 -13.08424 -12.95711 -12.89016 -12.68461 -12.49611 -12.34343 -12.23395 -11.98342 -11.57051 -11.44832 -11.39851 -11.19407 -11.17802 -10.98056 -10.88082 -10.71701 -10.69665 -10.40460 -10.21707 -9.65490 -9.50381 -9.20861 -9.01462 -8.81721 -8.61930 -8.37242 -6.03768 -4.13406 1.59620 1.77976 2.19958 2.39203 3.28317 3.35052 3.37801 3.41161 3.64092 3.87592 4.08002 4.26468 4.38433 4.52874 4.70219 4.73699 4.77746 4.82235 4.97315 5.11757 5.13914 5.22193 5.23284 5.31510 5.35461 5.50373 5.56425 5.67528 5.83580 5.94982 6.00915 6.09527 6.21945 6.45668 6.63656 6.82584 6.83974 6.92566 6.99005 7.07777 7.31759 7.33216 7.53285 7.54530 7.68790 7.92360 7.97663 8.11012 8.29886 8.39254 8.86435 9.52155 10.98302 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025095 B = 0.002184 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.494409 B =12816.101491 C =13137.469341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.355 6.355 3 C 0.474 3.526 4 O -0.498 6.498 5 C -0.069 4.069 6 C -0.137 4.137 7 C -0.123 4.123 8 C 0.088 3.912 9 N -0.600 5.600 10 C 0.527 3.473 11 O -0.519 6.519 12 C 0.502 3.498 13 O -0.530 6.530 14 N -0.678 5.678 15 C 0.128 3.872 16 C 0.056 3.944 17 C -0.132 4.132 18 C -0.134 4.134 19 C -0.509 4.509 20 H 0.058 0.942 21 C 0.068 3.932 22 N -0.883 5.883 23 Si 0.894 3.106 24 H -0.280 1.280 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.119 3.881 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.411 0.589 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.008 0.992 42 H 0.083 0.917 43 H 0.030 0.970 44 H 0.027 0.973 45 H 0.087 0.913 46 H 0.008 0.992 47 H 0.261 0.739 48 H 0.089 0.911 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.115 -9.784 22.271 25.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.316 3.684 4 O -0.384 6.384 5 C -0.071 4.071 6 C -0.194 4.194 7 C -0.161 4.161 8 C -0.034 4.034 9 N -0.335 5.335 10 C 0.311 3.689 11 O -0.394 6.394 12 C 0.281 3.719 13 O -0.408 6.408 14 N -0.330 5.330 15 C 0.007 3.993 16 C 0.055 3.945 17 C -0.190 4.190 18 C -0.191 4.191 19 C -0.547 4.547 20 H 0.077 0.923 21 C -0.134 4.134 22 N -0.521 5.521 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.213 1.213 26 H -0.200 1.200 27 C -0.004 4.004 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.144 0.856 38 H 0.249 0.751 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.027 0.973 42 H 0.102 0.898 43 H 0.050 0.950 44 H 0.047 0.953 45 H 0.106 0.894 46 H 0.027 0.973 47 H 0.071 0.929 48 H 0.108 0.892 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.252 -9.378 22.022 25.662 hybrid contribution 0.100 0.363 -0.618 0.724 sum -9.152 -9.015 21.404 24.963 Atomic orbital electron populations 1.23320 0.75996 1.03925 1.02709 1.86498 1.23645 1.33096 1.83905 1.23405 0.91412 0.81505 0.72100 1.90678 1.66749 1.36347 1.44632 1.21493 0.87456 0.99761 0.98374 1.21896 1.02081 1.00903 0.94519 1.22997 0.98901 0.92667 1.01493 1.23161 0.96100 0.95883 0.88283 1.48496 1.55411 1.23922 1.05668 1.20183 0.80635 0.87334 0.80789 1.90767 1.50860 1.39385 1.58378 1.19776 0.81594 0.86401 0.84105 1.90610 1.51846 1.39407 1.58969 1.46239 1.54606 1.25987 1.06159 1.21950 0.94789 0.85831 0.96746 1.18386 0.93876 0.95398 0.86834 1.21834 0.98021 0.95487 1.03609 1.21882 0.96039 0.96738 1.04482 1.20920 1.36104 1.04288 0.93417 0.92334 1.24881 0.95647 0.96025 0.96876 1.69825 1.44169 1.33653 1.04502 0.86579 0.80821 0.82377 0.78033 1.20612 1.21333 1.19965 1.22061 0.97539 0.90230 0.90526 0.87849 0.91809 0.91713 0.90734 0.90255 0.91371 0.88662 0.88677 0.90299 0.85619 0.75148 0.91931 0.91870 0.97260 0.89838 0.95048 0.95336 0.89405 0.97348 0.92926 0.89243 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.22 10.46 -39.25 -0.41 -3.63 16 3 C 0.47 4.92 6.37 36.00 0.23 5.15 16 4 O -0.50 -6.52 15.18 -18.75 -0.28 -6.80 16 5 C -0.07 -0.58 0.90 -154.29 -0.14 -0.72 16 6 C -0.14 -0.73 8.15 37.16 0.30 -0.43 16 7 C -0.12 -1.08 5.98 -24.76 -0.15 -1.23 16 8 C 0.09 0.91 6.63 -2.03 -0.01 0.90 16 9 N -0.60 -7.66 3.29 -170.16 -0.56 -8.22 16 10 C 0.53 8.46 7.95 -11.59 -0.09 8.36 16 11 O -0.52 -9.33 16.82 5.50 0.09 -9.24 16 12 C 0.50 8.81 7.87 -11.59 -0.09 8.71 16 13 O -0.53 -9.70 13.69 5.50 0.08 -9.63 16 14 N -0.68 -12.59 4.90 -60.73 -0.30 -12.89 16 15 C 0.13 2.66 4.50 -4.04 -0.02 2.64 16 16 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 17 C -0.13 -3.00 8.03 37.16 0.30 -2.70 16 18 C -0.13 -3.07 8.11 37.16 0.30 -2.76 16 19 C -0.51 -13.13 8.01 -34.44 -0.28 -13.41 16 20 H 0.06 1.51 7.75 -52.48 -0.41 1.10 16 21 C 0.07 1.76 5.13 -17.82 -0.09 1.67 16 22 N -0.88 -23.56 9.45 55.43 0.52 -23.03 16 23 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.12 1.20 6.27 -2.98 -0.02 1.19 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 30 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 1.05 6.90 -51.93 -0.36 0.69 16 35 H 0.09 0.61 7.85 -51.93 -0.41 0.20 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.13 1.58 5.42 -51.92 -0.28 1.30 16 38 H 0.41 7.57 5.63 -40.82 -0.23 7.34 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.01 0.18 6.71 -51.93 -0.35 -0.17 16 42 H 0.08 2.08 6.25 -51.93 -0.32 1.76 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.09 2.22 6.10 -51.93 -0.32 1.90 16 46 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 47 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 48 H 0.09 0.74 7.68 -51.93 -0.40 0.34 16 49 H 0.09 0.97 7.57 -51.93 -0.39 0.58 16 LS Contribution 392.19 15.07 5.91 5.91 Total: -1.00 -30.37 392.19 -6.35 -36.71 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.61 Total: 5.39 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 1.23 Total: 9.88 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: -0.33 Total: -44.14 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.53 Total: -29.29 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.37 -6.35 -36.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422479811.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.482 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds