Wall clock time and date at job start Sat Apr 11 2020 06:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 117.00191 * 2 1 4 4 O 1.20826 * 119.99591 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00141 * 179.97438 * 3 2 1 6 6 C 1.53002 * 110.28978 * 300.69859 * 5 3 2 7 7 C 1.54620 * 110.32656 * 178.56720 * 5 3 2 8 8 C 1.55116 * 102.75447 * 219.31608 * 7 5 3 9 9 N 1.48114 * 103.31833 * 37.26823 * 8 7 5 10 10 C 1.34774 * 127.03937 * 140.79685 * 9 8 7 11 11 O 1.21347 * 120.00092 * 179.97438 * 10 9 8 12 12 C 1.49443 * 119.99787 * 359.95807 * 10 9 8 13 13 O 1.21352 * 120.00501 * 359.97438 * 12 10 9 14 14 N 1.34779 * 120.00118 * 179.97438 * 12 10 9 15 15 C 1.46496 * 120.00278 * 179.97438 * 14 12 10 16 16 C 1.52999 * 109.47355 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47511 * 300.00713 * 16 15 14 18 18 C 1.53007 * 109.46588 * 60.00564 * 16 15 14 19 19 C 1.50695 * 109.47538 * 180.02562 * 16 15 14 20 20 H 1.08005 * 119.99794 * 357.01104 * 19 16 15 21 21 C 1.37876 * 120.00367 * 177.00966 * 19 16 15 22 22 N 1.31508 * 119.99965 * 5.54215 * 21 19 16 23 23 Si 1.86805 * 120.00287 * 185.54474 * 21 19 16 24 24 H 1.48496 * 109.46939 * 84.99450 * 23 21 19 25 25 H 1.48495 * 109.47322 * 205.00163 * 23 21 19 26 26 H 1.48498 * 109.46972 * 325.00021 * 23 21 19 27 27 C 1.47493 * 105.92811 * 320.75811 * 9 8 7 28 28 H 1.09001 * 109.47051 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47560 * 300.00492 * 1 2 3 30 30 H 1.09010 * 109.46885 * 60.00322 * 1 2 3 31 31 H 1.08999 * 109.46989 * 59.29856 * 6 5 3 32 32 H 1.09002 * 109.47390 * 179.30311 * 6 5 3 33 33 H 1.09006 * 109.47018 * 299.29722 * 6 5 3 34 34 H 1.09001 * 110.73996 * 337.58806 * 7 5 3 35 35 H 1.08997 * 110.74257 * 100.92215 * 7 5 3 36 36 H 1.08996 * 110.59223 * 278.82121 * 8 7 5 37 37 H 1.09009 * 110.82004 * 155.81335 * 8 7 5 38 38 H 0.97002 * 119.99588 * 0.02562 * 14 12 10 39 39 H 1.09000 * 109.47618 * 300.00780 * 15 14 12 40 40 H 1.09005 * 109.46680 * 60.00506 * 15 14 12 41 41 H 1.08998 * 109.46867 * 53.93110 * 17 16 15 42 42 H 1.08999 * 109.47265 * 173.92902 * 17 16 15 43 43 H 1.08997 * 109.46777 * 293.93021 * 17 16 15 44 44 H 1.08999 * 109.47330 * 60.00426 * 18 16 15 45 45 H 1.09002 * 109.46548 * 179.97438 * 18 16 15 46 46 H 1.08995 * 109.46964 * 299.99748 * 18 16 15 47 47 H 0.96998 * 120.00401 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.91526 * 266.08842 * 27 9 8 49 49 H 1.09000 * 109.91301 * 144.80921 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1340 0.5712 1.2349 7 6 4.0269 2.7504 -0.0358 8 6 5.2478 2.7046 -0.9914 9 7 4.8437 1.7122 -2.0140 10 6 5.0762 1.7724 -3.3402 11 8 4.6853 0.8817 -4.0657 12 6 5.8151 2.9362 -3.9171 13 8 6.2054 3.8273 -3.1917 14 7 6.0481 2.9962 -5.2433 15 6 6.7719 4.1373 -5.8090 16 6 6.9009 3.9597 -7.3232 17 6 7.6681 2.6701 -7.6219 18 6 5.5064 3.8799 -7.9478 19 6 7.6460 5.1332 -7.9050 20 1 7.9506 5.9496 -7.2669 21 6 7.9389 5.1647 -9.2520 22 7 7.4749 4.2262 -10.0479 23 14 8.9949 6.5403 -9.9463 24 1 10.4295 6.1913 -9.7876 25 1 8.6861 6.7222 -11.3874 26 1 8.7085 7.8010 -9.2158 27 6 4.1357 0.6441 -1.2838 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 3.8221 -0.4732 1.2334 32 1 5.2225 0.6254 1.2156 33 1 3.7618 1.0602 2.1352 34 1 3.2429 3.3895 -0.4420 35 1 4.3245 3.0865 0.9574 36 1 6.1382 2.3686 -0.4600 37 1 5.4191 3.6794 -1.4482 38 1 5.7358 2.2841 -5.8232 39 1 6.2256 5.0561 -5.5958 40 1 7.7655 4.1939 -5.3643 41 1 7.1885 1.8353 -7.1108 42 1 7.6669 2.4872 -8.6965 43 1 8.6954 2.7690 -7.2713 44 1 4.9598 4.7986 -7.7350 45 1 5.5983 3.7538 -9.0266 46 1 4.9678 3.0309 -7.5269 47 1 7.6806 4.2485 -10.9955 48 1 4.8314 -0.1551 -1.0282 49 1 3.3238 0.2513 -1.8959 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422479811.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:00 Heat of formation + Delta-G solvation = -166.970446 kcal Electronic energy + Delta-G solvation = -30516.935173 eV Core-core repulsion = 26250.899438 eV Total energy + Delta-G solvation = -4266.035735 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -42.31263 -41.54934 -39.99372 -38.87399 -38.20015 -37.55591 -35.20165 -34.20056 -32.75851 -30.82401 -28.79533 -28.62957 -27.60338 -27.55985 -27.06877 -25.71539 -23.80716 -23.54945 -21.19048 -20.81461 -20.62190 -19.00905 -18.40778 -18.25628 -17.82122 -17.65836 -17.53639 -17.17564 -16.66309 -16.56580 -16.15726 -15.64980 -15.19419 -15.04472 -14.82965 -14.71719 -14.41420 -14.18307 -14.08545 -13.98230 -13.73702 -13.68614 -13.26137 -13.10951 -13.07822 -12.98204 -12.79341 -12.70230 -12.59572 -12.49783 -12.27587 -12.19984 -12.13320 -11.87089 -11.78069 -11.51154 -11.48992 -11.28111 -10.75548 -10.55929 -10.40849 -10.17609 -9.98905 -8.02223 -6.17498 0.28348 0.95616 1.17730 1.45052 1.47538 1.54958 1.60439 2.08344 2.40522 2.51806 3.08909 3.22120 3.30265 3.37708 3.64174 3.88076 4.05654 4.23079 4.25611 4.28347 4.33588 4.41995 4.47027 4.57052 4.62188 4.67170 4.67588 4.81032 4.84130 4.91903 4.93746 4.99914 5.02629 5.06349 5.09063 5.15631 5.25651 5.28161 5.32175 5.48524 5.63656 5.68191 5.94910 6.08921 6.16872 6.20017 6.39952 6.57060 6.60868 6.85479 6.92780 7.50129 8.97749 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025095 B = 0.002184 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.494409 B =12816.101491 C =13137.469341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.471 3.529 4 O -0.532 6.532 5 C -0.062 4.062 6 C -0.132 4.132 7 C -0.116 4.116 8 C 0.085 3.915 9 N -0.595 5.595 10 C 0.526 3.474 11 O -0.545 6.545 12 C 0.502 3.498 13 O -0.537 6.537 14 N -0.681 5.681 15 C 0.145 3.855 16 C 0.050 3.950 17 C -0.121 4.121 18 C -0.124 4.124 19 C -0.526 4.526 20 H 0.053 0.947 21 C 0.026 3.974 22 N -0.901 5.901 23 Si 0.948 3.052 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.273 1.273 27 C 0.116 3.884 28 H 0.134 0.866 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.126 0.874 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.412 0.588 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.030 0.970 42 H 0.060 0.940 43 H 0.025 0.975 44 H 0.022 0.978 45 H 0.063 0.937 46 H 0.027 0.973 47 H 0.260 0.740 48 H 0.117 0.883 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.804 -10.761 24.609 28.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.315 3.685 4 O -0.421 6.421 5 C -0.064 4.064 6 C -0.189 4.189 7 C -0.154 4.154 8 C -0.036 4.036 9 N -0.329 5.329 10 C 0.310 3.690 11 O -0.423 6.423 12 C 0.283 3.717 13 O -0.416 6.416 14 N -0.333 5.333 15 C 0.022 3.978 16 C 0.049 3.951 17 C -0.179 4.179 18 C -0.182 4.182 19 C -0.565 4.565 20 H 0.071 0.929 21 C -0.174 4.174 22 N -0.540 5.540 23 Si 0.775 3.225 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.198 1.198 27 C -0.006 4.006 28 H 0.152 0.848 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.144 0.856 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.250 0.750 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.079 0.921 43 H 0.044 0.956 44 H 0.041 0.959 45 H 0.082 0.918 46 H 0.046 0.954 47 H 0.069 0.931 48 H 0.135 0.865 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.948 -10.366 24.415 27.993 hybrid contribution -0.078 0.651 -1.258 1.419 sum -9.026 -9.715 23.158 26.685 Atomic orbital electron populations 1.23576 0.74783 1.05881 1.02397 1.86496 1.24908 1.32377 1.83387 1.23844 0.92236 0.81336 0.71085 1.90668 1.67652 1.37450 1.46358 1.21547 0.86215 0.99595 0.99004 1.21946 1.03078 1.00991 0.92899 1.22958 0.97306 0.92706 1.02434 1.23311 0.97988 0.94404 0.87861 1.48605 1.54244 1.25015 1.04995 1.19759 0.80878 0.86514 0.81897 1.90753 1.52296 1.39982 1.59261 1.20090 0.81216 0.86825 0.83569 1.90618 1.52003 1.39913 1.59089 1.46090 1.54968 1.25461 1.06793 1.21550 0.94730 0.86327 0.95185 1.18386 0.93611 0.94763 0.88307 1.21678 0.97920 0.96129 1.02193 1.21734 0.96247 0.97282 1.02940 1.21216 1.36489 1.05037 0.93718 0.92924 1.25507 0.96655 0.97928 0.97270 1.69945 1.44776 1.34743 1.04499 0.85725 0.79415 0.80123 0.77248 1.20331 1.21259 1.19804 1.22313 0.97583 0.90119 0.90593 0.84798 0.91405 0.92807 0.89918 0.88377 0.90364 0.91296 0.85577 0.87290 0.87870 0.75018 0.92736 0.92306 0.95109 0.92129 0.95564 0.95854 0.91772 0.95389 0.93075 0.86474 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.36 -5.91 10.46 -51.40 -0.54 -6.45 16 3 C 0.47 9.23 6.37 71.23 0.45 9.68 16 4 O -0.53 -13.82 15.18 21.96 0.33 -13.49 16 5 C -0.06 -0.90 0.90 -52.04 -0.05 -0.95 16 6 C -0.13 -0.91 8.15 71.98 0.59 -0.32 16 7 C -0.12 -1.82 5.98 31.87 0.19 -1.63 16 8 C 0.09 1.61 6.63 86.79 0.58 2.18 16 9 N -0.59 -14.32 3.29 -810.62 -2.67 -16.99 16 10 C 0.53 16.54 7.95 87.27 0.69 17.23 16 11 O -0.55 -19.36 16.82 -3.24 -0.05 -19.42 16 12 C 0.50 17.42 7.87 87.27 0.69 18.10 16 13 O -0.54 -19.42 13.69 -3.25 -0.04 -19.46 16 14 N -0.68 -25.07 4.90 -464.42 -2.27 -27.34 16 15 C 0.14 5.98 4.50 86.38 0.39 6.37 16 16 C 0.05 2.32 0.50 -52.93 -0.03 2.29 16 17 C -0.12 -5.52 8.03 71.98 0.58 -4.94 16 18 C -0.12 -5.73 8.11 71.98 0.58 -5.15 16 19 C -0.53 -27.34 8.01 25.60 0.20 -27.13 16 20 H 0.05 2.73 7.75 -2.91 -0.02 2.71 16 21 C 0.03 1.38 5.13 84.66 0.43 1.81 16 22 N -0.90 -48.55 9.45 21.45 0.20 -48.35 16 23 Si 0.95 42.28 29.54 68.60 2.03 44.30 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 25 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 27 C 0.12 2.09 6.27 86.53 0.54 2.64 16 28 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.77 8.13 -2.39 -0.02 0.75 16 30 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.08 0.48 8.13 -2.39 -0.02 0.46 16 32 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.07 1.49 6.90 -2.39 -0.02 1.47 16 35 H 0.13 1.20 7.85 -2.39 -0.02 1.18 16 36 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.10 2.50 5.42 -2.38 -0.01 2.49 16 38 H 0.41 14.99 5.63 -92.71 -0.52 14.46 16 39 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 41 H 0.03 1.22 6.71 -2.39 -0.02 1.21 16 42 H 0.06 3.04 6.25 -2.39 -0.01 3.03 16 43 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.02 1.04 8.14 -2.39 -0.02 1.03 16 45 H 0.06 3.28 6.10 -2.39 -0.01 3.27 16 46 H 0.03 1.14 6.86 -2.39 -0.02 1.12 16 47 H 0.26 13.52 8.31 -92.71 -0.77 12.74 16 48 H 0.12 1.53 7.68 -2.39 -0.02 1.51 16 49 H 0.07 1.52 7.57 -2.39 -0.02 1.50 16 Total: -1.00 -66.19 392.19 4.47 -61.72 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.45 Total: 23.77 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 7.04 Total: 21.72 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -4.74 Total: -92.68 kcal Atomic # 8 Polarization: -58.52 SS G_CDS: -0.30 Total: -58.82 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -66.19 4.47 -61.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422479811.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.255 kcal (2) G-P(sol) polarization free energy of solvation -66.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds