Wall clock time and date at job start Sat Apr 11 2020 06:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00062 * 2 1 4 4 C 1.50705 * 109.47283 * 270.00081 * 3 2 1 5 5 H 1.07998 * 119.99491 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00109 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99866 * 179.97438 * 6 4 3 8 8 Si 1.86797 * 119.99907 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.47135 * 90.00429 * 8 6 4 10 10 H 1.48504 * 109.46833 * 210.00025 * 8 6 4 11 11 H 1.48497 * 109.47134 * 329.99969 * 8 6 4 12 12 C 1.34783 * 119.99981 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99796 * 175.07259 * 12 2 1 14 14 C 1.50698 * 119.99561 * 355.34239 * 12 2 1 15 15 H 1.08996 * 109.45060 * 316.53785 * 14 12 2 16 16 C 1.53126 * 109.44825 * 76.48945 * 14 12 2 17 17 C 1.53469 * 109.35236 * 189.64096 * 16 14 12 18 18 C 1.50823 * 108.10753 * 311.16319 * 17 16 14 19 19 N 1.29941 * 128.57174 * 195.89617 * 18 17 16 20 20 N 1.28864 * 109.87520 * 179.89250 * 19 18 17 21 21 C 1.31768 * 109.78456 * 0.03464 * 20 19 18 22 22 C 1.47947 * 126.63448 * 180.02562 * 21 20 19 23 23 C 1.39515 * 120.13760 * 162.76583 * 22 21 20 24 24 C 1.37982 * 119.85544 * 179.70187 * 23 22 21 25 25 C 1.38344 * 120.13824 * 0.59604 * 24 23 22 26 26 C 1.38347 * 120.28362 * 359.68353 * 25 24 23 27 27 C 1.37976 * 120.13927 * 0.02562 * 26 25 24 28 28 N 1.36003 * 106.73074 * 0.04666 * 21 20 19 29 29 C 1.46199 * 129.02489 * 179.82544 * 28 21 20 30 30 H 1.08998 * 109.46975 * 270.99449 * 1 2 3 31 31 H 1.09001 * 109.47131 * 30.99261 * 1 2 3 32 32 H 1.09001 * 109.47047 * 150.99318 * 1 2 3 33 33 H 1.08997 * 109.47580 * 30.00029 * 3 2 1 34 34 H 1.09004 * 109.47250 * 150.00073 * 3 2 1 35 35 H 0.97001 * 119.99746 * 179.97438 * 7 6 4 36 36 H 1.08999 * 109.49011 * 309.60417 * 16 14 12 37 37 H 1.08998 * 109.49488 * 69.67612 * 16 14 12 38 38 H 1.09003 * 109.73253 * 70.81329 * 17 16 14 39 39 H 1.09001 * 109.73288 * 191.50716 * 17 16 14 40 40 H 1.07998 * 120.07339 * 359.97438 * 23 22 21 41 41 H 1.07998 * 119.92694 * 180.27894 * 24 23 22 42 42 H 1.08003 * 119.85898 * 179.69897 * 25 24 23 43 43 H 1.08003 * 119.93315 * 179.97438 * 26 25 24 44 44 H 1.07997 * 120.07162 * 180.02562 * 27 26 25 45 45 H 1.09000 * 109.61996 * 77.33972 * 29 28 21 46 46 H 1.09000 * 109.57728 * 316.86246 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.3466 3.2568 -2.9127 8 14 3.7351 3.9279 -0.2529 9 1 5.1085 3.5057 0.1224 10 1 3.7510 5.3548 -0.6642 11 1 2.8295 3.7585 0.9116 12 6 2.1389 -1.1673 -0.0005 13 8 3.3484 -1.1691 -0.0907 14 6 1.3891 -2.4702 0.1049 15 1 0.6132 -2.3819 0.8654 16 6 0.7450 -2.7984 -1.2450 17 6 -0.2101 -3.9879 -1.0770 18 6 0.5210 -5.0739 -0.3281 19 7 0.2087 -6.3300 -0.2131 20 7 1.0883 -6.9358 0.5079 21 6 2.0151 -6.0817 0.8922 22 6 3.1971 -6.3796 1.7307 23 6 4.2720 -5.4909 1.7670 24 6 5.3689 -5.7716 2.5558 25 6 5.4093 -6.9371 3.2999 26 6 4.3491 -7.8252 3.2637 27 6 3.2440 -7.5532 2.4836 28 7 1.6747 -4.8732 0.3694 29 6 2.3621 -3.5890 0.4955 30 1 -0.3633 0.0178 1.0275 31 1 -0.3633 0.8810 -0.5292 32 1 -0.3633 -0.8988 -0.4983 33 1 1.6085 2.0284 0.5138 34 1 3.1500 1.1384 0.5138 35 1 3.8234 4.0827 -3.0899 36 1 0.1879 -1.9323 -1.6023 37 1 1.5215 -3.0544 -1.9659 38 1 -1.0883 -3.6776 -0.5109 39 1 -0.5142 -4.3568 -2.0565 40 1 4.2438 -4.5832 1.1825 41 1 6.1996 -5.0823 2.5883 42 1 6.2722 -7.1546 3.9120 43 1 4.3869 -8.7336 3.8465 44 1 2.4169 -8.2471 2.4564 45 1 3.2267 -3.5700 -0.1680 46 1 2.6864 -3.4481 1.5266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449107967.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:24 Heat of formation + Delta-G solvation = 54.898960 kcal Electronic energy + Delta-G solvation = -29346.160374 eV Core-core repulsion = 25429.347289 eV Total energy + Delta-G solvation = -3916.813085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -44.33440 -41.19188 -39.99975 -37.97294 -36.76270 -35.16514 -34.63920 -32.98149 -32.01046 -31.87086 -30.32447 -29.67648 -27.50947 -26.33001 -24.99074 -24.40334 -24.07694 -23.08380 -22.00684 -21.06503 -19.92149 -19.12427 -18.71676 -18.13528 -17.58115 -17.38767 -17.10021 -16.47182 -16.39021 -16.01081 -15.86854 -15.65170 -15.16472 -15.05850 -14.90911 -14.64807 -14.37523 -14.30688 -13.93234 -13.81933 -13.69317 -13.39898 -13.35238 -13.12624 -12.89281 -12.72143 -12.49392 -12.36395 -12.32029 -12.17819 -12.02672 -11.87424 -11.73455 -11.49725 -11.30563 -10.83780 -10.82351 -10.71129 -9.99196 -9.44596 -9.40608 -8.33014 -6.37974 -0.25628 0.36803 0.96238 1.17986 1.34251 1.37451 1.45513 1.60741 1.71931 2.20018 2.31444 2.79256 2.93025 3.01714 3.06628 3.22889 3.36142 3.46795 3.71011 3.86941 3.95440 3.96671 4.06929 4.16210 4.21430 4.26084 4.30972 4.44351 4.48860 4.54403 4.66851 4.68658 4.76366 4.78759 4.81766 4.90134 4.92852 4.93758 5.00299 5.04294 5.13273 5.41559 5.43039 5.45261 5.49930 5.56287 5.70535 5.92615 6.22312 6.59379 6.64617 7.18567 7.31503 7.51768 8.83731 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013788 B = 0.003007 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.326087 B = 9309.724885 C =10843.054192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.598 5.598 3 C 0.223 3.777 4 C -0.532 4.532 5 H 0.032 0.968 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.279 1.279 11 H -0.235 1.235 12 C 0.512 3.488 13 O -0.584 6.584 14 C -0.107 4.107 15 H 0.136 0.864 16 C -0.119 4.119 17 C -0.022 4.022 18 C 0.186 3.814 19 N -0.321 5.321 20 N -0.316 5.316 21 C 0.219 3.781 22 C -0.042 4.042 23 C -0.122 4.122 24 C -0.121 4.121 25 C -0.100 4.100 26 C -0.115 4.115 27 C -0.086 4.086 28 N -0.468 5.468 29 C 0.125 3.875 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.021 0.979 35 H 0.267 0.733 36 H 0.113 0.887 37 H 0.063 0.937 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.146 0.854 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.132 0.868 45 H 0.093 0.907 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.335 -17.110 14.234 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.328 5.328 3 C 0.100 3.900 4 C -0.571 4.571 5 H 0.050 0.950 6 C -0.188 4.188 7 N -0.587 5.587 8 Si 0.768 3.232 9 H -0.203 1.203 10 H -0.205 1.205 11 H -0.158 1.158 12 C 0.299 3.701 13 O -0.465 6.465 14 C -0.128 4.128 15 H 0.154 0.846 16 C -0.157 4.157 17 C -0.061 4.061 18 C -0.081 4.081 19 N -0.161 5.161 20 N -0.156 5.156 21 C -0.046 4.046 22 C -0.045 4.045 23 C -0.142 4.142 24 C -0.139 4.139 25 C -0.118 4.118 26 C -0.133 4.133 27 C -0.106 4.106 28 N -0.158 5.158 29 C 0.002 3.998 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.131 0.869 37 H 0.081 0.919 38 H 0.151 0.849 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.164 0.836 42 H 0.176 0.824 43 H 0.176 0.824 44 H 0.150 0.850 45 H 0.111 0.889 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.462 -18.226 13.903 23.354 hybrid contribution 1.334 1.988 -0.213 2.404 sum -3.128 -16.238 13.690 21.468 Atomic orbital electron populations 1.22253 0.77406 1.04736 1.03460 1.47862 1.08539 1.05619 1.70785 1.19392 0.92805 0.82391 0.95379 1.21543 1.36541 1.06556 0.92466 0.95008 1.25840 0.95464 0.99065 0.98418 1.70050 1.42801 1.24480 1.21321 0.85755 0.79618 0.77732 0.80082 1.20264 1.20473 1.15800 1.20531 0.87385 0.85704 0.76437 1.90681 1.16387 1.87718 1.51710 1.21565 0.98642 0.90314 1.02308 0.84613 1.21817 0.99606 0.99971 0.94279 1.20479 0.96866 0.87429 1.01302 1.25582 0.88097 0.96161 0.98277 1.73916 1.21669 1.03768 1.16705 1.74650 1.01713 1.25776 1.13502 1.23027 0.98735 0.82107 1.00726 1.17644 0.90311 0.98005 0.98500 1.21537 0.93708 0.99079 0.99885 1.21389 0.97813 0.98475 0.96202 1.21739 0.99238 0.93049 0.97778 1.21483 0.92504 1.00845 0.98473 1.21324 0.99590 0.94834 0.94885 1.46358 1.21139 1.09580 1.38715 1.21934 0.95135 0.77974 1.04737 0.89980 0.91160 0.88346 0.92887 0.96109 0.92376 0.86867 0.91850 0.84947 0.85907 0.86063 0.83613 0.82423 0.82354 0.84983 0.88939 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.43 9.82 127.77 1.25 2.68 16 2 N -0.60 -20.78 2.86 -851.12 -2.43 -23.21 16 3 C 0.22 9.85 4.20 85.64 0.36 10.21 16 4 C -0.53 -29.43 9.94 25.60 0.25 -29.18 16 5 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 6 C 0.01 0.57 5.47 84.65 0.46 1.03 16 7 N -0.95 -58.10 13.96 21.45 0.30 -57.80 16 8 Si 0.95 42.32 27.47 68.60 1.88 44.20 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 12 C 0.51 17.48 6.86 87.66 0.60 18.08 16 13 O -0.58 -25.70 15.43 -3.03 -0.05 -25.74 16 14 C -0.11 -2.43 1.71 -11.38 -0.02 -2.45 16 15 H 0.14 2.26 7.56 -2.39 -0.02 2.24 16 16 C -0.12 -2.35 4.81 30.79 0.15 -2.20 16 17 C -0.02 -0.35 6.34 30.04 0.19 -0.16 16 18 C 0.19 4.69 7.77 137.92 1.07 5.76 16 19 N -0.32 -9.95 12.18 -49.86 -0.61 -10.56 16 20 N -0.32 -10.18 12.05 -51.40 -0.62 -10.80 16 21 C 0.22 6.22 7.72 136.61 1.06 7.28 16 22 C -0.04 -1.02 5.87 -20.09 -0.12 -1.14 16 23 C -0.12 -2.68 8.99 22.52 0.20 -2.48 16 24 C -0.12 -2.06 10.03 22.23 0.22 -1.84 16 25 C -0.10 -1.34 10.04 22.32 0.22 -1.11 16 26 C -0.12 -1.66 10.03 22.23 0.22 -1.44 16 27 C -0.09 -1.76 9.71 22.52 0.22 -1.54 16 28 N -0.47 -12.09 3.16 -505.55 -1.60 -13.68 16 29 C 0.12 3.03 4.02 86.55 0.35 3.38 16 30 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16 32 H 0.10 1.60 4.43 -2.39 -0.01 1.59 16 33 H 0.05 2.14 7.13 -2.39 -0.02 2.12 16 34 H 0.02 0.99 6.92 -2.38 -0.02 0.97 16 35 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.11 2.02 5.79 -2.39 -0.01 2.01 16 37 H 0.06 1.53 8.12 -2.39 -0.02 1.51 16 38 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.12 2.78 4.96 -2.91 -0.01 2.76 16 41 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 42 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 43 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 44 H 0.13 2.68 7.96 -2.91 -0.02 2.66 16 45 H 0.09 2.57 6.96 -2.39 -0.02 2.56 16 46 H 0.11 2.47 7.16 -2.39 -0.02 2.45 16 Total: -1.00 -81.33 371.25 4.54 -76.79 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.96 Total: 15.92 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 6.70 Total: 4.89 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -4.96 Total: -116.06 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.05 Total: -25.74 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.88 Total: 44.20 kcal Total: -81.33 4.54 -76.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449107967.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.689 kcal (2) G-P(sol) polarization free energy of solvation -81.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds