Wall clock time and date at job start Sat Apr 11 2020 06:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99730 * 2 1 4 4 C 1.50706 * 109.46691 * 90.00350 * 3 2 1 5 5 H 1.07996 * 119.99895 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99955 * 179.97438 * 4 3 2 7 7 N 1.31521 * 119.99840 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00108 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.46963 * 59.99886 * 8 6 4 10 10 H 1.48494 * 109.46844 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46927 * 299.99558 * 8 6 4 12 12 C 1.34772 * 119.99838 * 180.02562 * 2 1 3 13 13 O 1.21287 * 119.99626 * 185.36529 * 12 2 1 14 14 C 1.50704 * 120.00490 * 5.36633 * 12 2 1 15 15 H 1.09004 * 109.44599 * 46.28155 * 14 12 2 16 16 C 1.53132 * 109.44460 * 286.37416 * 14 12 2 17 17 C 1.53466 * 109.34815 * 170.35476 * 16 14 12 18 18 C 1.50824 * 108.10527 * 48.84788 * 17 16 14 19 19 N 1.29940 * 128.57068 * 163.98731 * 18 17 16 20 20 N 1.28859 * 109.87777 * 180.16655 * 19 18 17 21 21 C 1.31776 * 109.78451 * 359.96660 * 20 19 18 22 22 C 1.47948 * 126.63396 * 179.97438 * 21 20 19 23 23 C 1.39513 * 120.13916 * 16.28045 * 22 21 20 24 24 C 1.37973 * 119.85805 * 179.78929 * 23 22 21 25 25 C 1.38348 * 120.13846 * 0.48693 * 24 23 22 26 26 C 1.38349 * 120.28193 * 359.74500 * 25 24 23 27 27 C 1.37980 * 120.14047 * 0.02562 * 26 25 24 28 28 N 1.36008 * 106.72747 * 359.96742 * 21 20 19 29 29 C 1.46213 * 129.01489 * 180.10948 * 28 21 20 30 30 H 1.09004 * 109.47131 * 90.05187 * 1 2 3 31 31 H 1.08998 * 109.46927 * 210.05108 * 1 2 3 32 32 H 1.09004 * 109.47048 * 330.05034 * 1 2 3 33 33 H 1.08996 * 109.47700 * 330.00356 * 3 2 1 34 34 H 1.08996 * 109.46844 * 209.99799 * 3 2 1 35 35 H 0.97001 * 120.00033 * 179.97438 * 7 6 4 36 36 H 1.09006 * 109.49006 * 290.31630 * 16 14 12 37 37 H 1.08994 * 109.49263 * 50.39041 * 16 14 12 38 38 H 1.08991 * 109.73883 * 289.18708 * 17 16 14 39 39 H 1.09007 * 109.76775 * 168.51585 * 17 16 14 40 40 H 1.08003 * 120.07245 * 0.02562 * 23 22 21 41 41 H 1.07993 * 119.93137 * 180.25279 * 24 23 22 42 42 H 1.07994 * 119.85997 * 179.76387 * 25 24 23 43 43 H 1.07996 * 119.92752 * 179.97438 * 26 25 24 44 44 H 1.07999 * 120.07132 * 180.02562 * 27 26 25 45 45 H 1.09002 * 109.59783 * 43.23337 * 29 28 21 46 46 H 1.08995 * 109.60314 * 282.75360 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 1.4209 5 1 2.0982 1.0956 2.2417 6 6 3.1269 2.8774 1.6729 7 7 3.5550 3.6171 0.6733 8 14 3.4389 3.4162 3.4342 9 1 4.2413 2.3808 4.1337 10 1 4.1823 4.7016 3.4342 11 1 2.1415 3.5940 4.1345 12 6 2.1389 -1.1672 -0.0005 13 8 3.3478 -1.1695 0.0977 14 6 1.3904 -2.4694 -0.1232 15 1 0.6565 -2.3920 -0.9254 16 6 0.6732 -2.7714 1.1957 17 6 -0.2764 -3.9606 0.9975 18 6 0.4896 -5.0622 0.3086 19 7 0.1797 -6.3195 0.2009 20 7 1.0945 -6.9412 -0.4602 21 6 2.0435 -6.0967 -0.8105 22 6 3.2677 -6.4134 -1.5786 23 6 3.3563 -7.6078 -2.2941 24 6 4.4990 -7.8953 -3.0120 25 6 5.5594 -7.0068 -3.0149 26 6 5.4797 -5.8230 -2.3034 27 6 4.3406 -5.5216 -1.5854 28 7 1.6798 -4.8776 -0.3295 29 6 2.3782 -3.5980 -0.4419 30 1 -0.3633 -0.0009 -1.0277 31 1 -0.3633 -0.8895 0.5146 32 1 -0.3633 0.8905 0.5131 33 1 1.6085 2.0284 -0.5137 34 1 3.1499 1.1384 -0.5138 35 1 4.0318 4.4430 0.8506 36 1 1.4088 -3.0171 1.9617 37 1 0.1014 -1.8973 1.5072 38 1 -1.1215 -3.6577 0.3795 39 1 -0.6351 -4.3112 1.9653 40 1 2.5307 -8.3041 -2.2893 41 1 4.5672 -8.8176 -3.5696 42 1 6.4532 -7.2382 -3.5753 43 1 6.3110 -5.1337 -2.3094 44 1 4.2794 -4.5969 -1.0307 45 1 2.7573 -3.4763 -1.4566 46 1 3.2064 -3.5700 0.2662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449107968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:32 Heat of formation + Delta-G solvation = 73.435808 kcal Electronic energy + Delta-G solvation = -29318.184567 eV Core-core repulsion = 25402.175301 eV Total energy + Delta-G solvation = -3916.009267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.29038 -39.78558 -39.23452 -36.77716 -35.17642 -34.14182 -32.77035 -31.96086 -31.16812 -30.86518 -28.70729 -28.00079 -26.20354 -25.04693 -24.03527 -23.45253 -22.88486 -22.12651 -21.08166 -19.98743 -18.63021 -17.67940 -17.08181 -16.71798 -16.62035 -16.12528 -15.70605 -15.36773 -15.16250 -14.90974 -14.74082 -14.43932 -14.16759 -14.05634 -13.82171 -13.51072 -13.21924 -13.11341 -12.67159 -12.47060 -12.33628 -12.20244 -12.01335 -11.67146 -11.56717 -11.44006 -11.37139 -11.28594 -11.05615 -10.85110 -10.66698 -10.45669 -10.27551 -10.25161 -9.91836 -9.77433 -9.23176 -9.17104 -8.53539 -8.49037 -7.86382 -6.14873 -4.20226 0.59520 1.12499 1.91337 2.21858 2.75427 3.03913 3.24832 3.30032 3.32579 3.56875 3.60315 3.88694 4.05643 4.22834 4.33488 4.41273 4.47166 4.59219 4.69330 4.83291 4.89218 4.92083 5.02918 5.08635 5.14468 5.19196 5.21064 5.30764 5.34243 5.43091 5.52206 5.54308 5.71209 5.74716 5.76298 5.82446 5.86947 5.93932 6.11703 6.17412 6.22221 6.24996 6.61947 6.70680 6.85466 7.25577 7.33590 7.79889 8.09531 8.16253 8.58598 8.69261 8.86240 9.45184 10.93284 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014001 B = 0.002907 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.436457 B = 9629.373395 C =10930.612244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.594 5.594 3 C 0.246 3.754 4 C -0.529 4.529 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.514 3.486 13 O -0.536 6.536 14 C -0.124 4.124 15 H 0.103 0.897 16 C -0.126 4.126 17 C -0.031 4.031 18 C 0.184 3.816 19 N -0.290 5.290 20 N -0.285 5.285 21 C 0.219 3.781 22 C -0.017 4.017 23 C -0.077 4.077 24 C -0.120 4.120 25 C -0.108 4.108 26 C -0.114 4.114 27 C -0.110 4.110 28 N -0.465 5.465 29 C 0.119 3.881 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.035 0.965 34 H 0.043 0.957 35 H 0.265 0.735 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.102 0.898 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.736 -17.360 -6.107 18.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.325 5.325 3 C 0.127 3.873 4 C -0.567 4.567 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.299 3.701 13 O -0.413 6.413 14 C -0.146 4.146 15 H 0.121 0.879 16 C -0.164 4.164 17 C -0.070 4.070 18 C -0.083 4.083 19 N -0.131 5.131 20 N -0.126 5.126 21 C -0.045 4.045 22 C -0.019 4.019 23 C -0.097 4.097 24 C -0.138 4.138 25 C -0.127 4.127 26 C -0.132 4.132 27 C -0.130 4.130 28 N -0.155 5.155 29 C -0.004 4.004 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.124 0.876 40 H 0.153 0.847 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.121 0.879 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.790 -18.403 -5.942 19.706 hybrid contribution 0.869 1.701 0.799 2.071 sum -2.922 -16.702 -5.142 17.718 Atomic orbital electron populations 1.21967 0.81291 1.03340 1.00912 1.48117 1.06311 1.07581 1.70500 1.19344 0.92420 0.77769 0.97739 1.21343 1.36908 1.06380 0.92095 0.92453 1.24934 0.95244 0.96347 0.97497 1.69915 1.38128 1.14391 1.30865 0.86553 0.78425 0.77902 0.84528 1.20148 1.21124 1.20192 1.19712 0.87719 0.84392 0.78286 1.90706 1.13929 1.86826 1.49871 1.21671 0.98421 0.93834 1.00643 0.87910 1.21917 0.99303 0.98997 0.96208 1.20289 0.96536 0.89206 1.01009 1.24904 0.87370 0.96144 0.99849 1.73991 1.20749 1.02173 1.16149 1.74725 0.99546 1.24937 1.13411 1.22630 0.98169 0.81877 1.01779 1.17484 0.89642 0.96437 0.98359 1.21186 0.98501 0.95225 0.94785 1.21125 0.93256 0.99926 0.99530 1.21344 0.98718 0.94077 0.98528 1.21116 0.97752 0.97376 0.96985 1.21530 0.92914 0.99327 0.99245 1.46337 1.18791 1.09426 1.40970 1.22034 0.95227 0.78127 1.04987 0.93498 0.91465 0.90309 0.94753 0.93888 0.92548 0.90044 0.87802 0.88271 0.87584 0.84672 0.85295 0.85584 0.85127 0.85154 0.87944 0.87351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 9.85 59.85 0.59 1.51 16 2 N -0.59 -11.11 2.86 -182.95 -0.52 -11.64 16 3 C 0.25 5.97 5.12 -5.19 -0.03 5.94 16 4 C -0.53 -14.13 9.39 -34.44 -0.32 -14.46 16 5 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 C 0.51 9.18 6.91 -10.99 -0.08 9.10 16 13 O -0.54 -11.82 15.42 5.55 0.09 -11.74 16 14 C -0.12 -1.55 1.74 -91.53 -0.16 -1.71 16 15 H 0.10 1.11 7.73 -51.93 -0.40 0.71 16 16 C -0.13 -1.35 4.82 -26.42 -0.13 -1.47 16 17 C -0.03 -0.29 6.34 -27.58 -0.17 -0.47 16 18 C 0.18 2.43 7.77 -154.66 -1.20 1.23 16 19 N -0.29 -4.55 12.18 32.89 0.40 -4.15 16 20 N -0.29 -4.55 12.04 32.40 0.39 -4.16 16 21 C 0.22 3.12 7.73 -154.75 -1.20 1.92 16 22 C -0.02 -0.21 5.87 -104.97 -0.62 -0.82 16 23 C -0.08 -0.82 9.70 -39.20 -0.38 -1.20 16 24 C -0.12 -1.03 10.03 -39.64 -0.40 -1.43 16 25 C -0.11 -0.90 10.04 -39.50 -0.40 -1.29 16 26 C -0.11 -1.09 10.03 -39.63 -0.40 -1.49 16 27 C -0.11 -1.24 9.00 -39.20 -0.35 -1.60 16 28 N -0.47 -6.17 3.16 -111.14 -0.35 -6.53 16 29 C 0.12 1.50 3.98 -4.03 -0.02 1.48 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.69 4.18 -51.93 -0.22 0.47 16 32 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 33 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 34 H 0.04 1.18 7.50 -51.93 -0.39 0.79 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 37 H 0.10 1.03 5.39 -51.93 -0.28 0.75 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.11 0.86 8.14 -51.92 -0.42 0.43 16 40 H 0.14 1.39 7.96 -52.48 -0.42 0.97 16 41 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 43 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.13 1.48 4.91 -52.49 -0.26 1.22 16 45 H 0.10 1.23 7.12 -51.93 -0.37 0.86 16 46 H 0.11 1.46 7.01 -51.93 -0.36 1.10 16 LS Contribution 374.38 15.07 5.64 5.64 Total: -1.00 -34.06 374.38 -10.03 -44.09 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.04 Total: 0.44 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -5.35 Total: -3.13 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 0.65 Total: -51.32 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.06 -10.03 -44.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449107968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.522 kcal (2) G-P(sol) polarization free energy of solvation -34.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds