Wall clock time and date at job start Sat Apr 11 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46882 * 2 1 4 4 C 1.53000 * 109.47159 * 240.00586 * 2 1 3 5 5 O 1.45191 * 109.47520 * 120.00114 * 2 1 3 6 6 C 1.34641 * 116.99892 * 60.00499 * 5 2 1 7 7 O 1.21512 * 119.99885 * 359.97438 * 6 5 2 8 8 N 1.34779 * 120.00049 * 180.02562 * 6 5 2 9 9 C 1.47066 * 136.05579 * 180.02562 * 8 6 5 10 10 C 1.53504 * 88.04678 * 207.05024 * 9 8 6 11 11 C 1.53000 * 114.20366 * 87.54725 * 10 9 8 12 12 C 1.50703 * 114.20523 * 220.37340 * 10 9 8 13 13 O 1.21282 * 120.00012 * 0.02562 * 12 10 9 14 14 N 1.34773 * 119.99733 * 180.02562 * 12 10 9 15 15 C 1.47070 * 136.05916 * 359.62381 * 14 12 10 16 16 C 1.53238 * 88.08264 * 207.21026 * 15 14 12 17 17 O 1.42893 * 114.01980 * 87.71891 * 16 15 14 18 18 C 1.50700 * 114.32078 * 220.47217 * 16 15 14 19 19 H 1.08005 * 120.00244 * 93.76265 * 18 16 15 20 20 C 1.37875 * 120.00081 * 273.75263 * 18 16 15 21 21 N 1.31508 * 120.00009 * 0.02562 * 20 18 16 22 22 Si 1.86806 * 119.99937 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46925 * 90.00648 * 22 20 18 24 24 H 1.48507 * 109.46833 * 210.00112 * 22 20 18 25 25 H 1.48493 * 109.47322 * 330.00717 * 22 20 18 26 26 C 1.47064 * 136.05636 * 180.02562 * 14 12 10 27 27 C 1.47064 * 136.05760 * 359.93904 * 8 6 5 28 28 H 1.08998 * 109.46771 * 299.99242 * 1 2 3 29 29 H 1.08997 * 109.47137 * 59.99920 * 1 2 3 30 30 H 1.09002 * 109.46571 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47510 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47630 * 300.00395 * 3 2 1 33 33 H 1.09006 * 109.47016 * 60.00567 * 3 2 1 34 34 H 1.08998 * 109.47324 * 299.99566 * 4 2 1 35 35 H 1.08999 * 109.47005 * 59.99817 * 4 2 1 36 36 H 1.09000 * 109.47444 * 179.97438 * 4 2 1 37 37 H 1.09002 * 113.46793 * 321.85996 * 9 8 6 38 38 H 1.08999 * 113.46805 * 92.24363 * 9 8 6 39 39 H 1.08997 * 109.47298 * 60.00240 * 11 10 9 40 40 H 1.09001 * 109.46890 * 180.02562 * 11 10 9 41 41 H 1.08999 * 109.46995 * 300.00021 * 11 10 9 42 42 H 1.09000 * 113.46768 * 321.94420 * 15 14 12 43 43 H 1.09000 * 113.46170 * 92.38169 * 15 14 12 44 44 H 0.96700 * 113.99707 * 86.38753 * 17 16 15 45 45 H 0.96997 * 120.00246 * 179.97438 * 21 20 18 46 46 H 1.08995 * 113.46858 * 267.62308 * 26 14 12 47 47 H 1.08998 * 113.46725 * 38.05955 * 26 14 12 48 48 H 1.08999 * 113.47096 * 267.69948 * 27 8 6 49 49 H 1.09005 * 113.46966 * 38.08340 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0141 -0.6844 1.1854 6 6 1.6524 -1.9724 1.3381 7 8 0.9511 -2.5095 0.5038 8 7 2.0675 -2.6655 2.4169 9 6 1.8960 -4.0344 2.9263 10 6 2.1037 -3.4777 4.3416 11 6 0.8228 -2.9798 5.0141 12 6 2.9465 -4.3535 5.2326 13 8 3.3942 -5.3977 4.8083 14 7 3.2027 -3.9762 6.5008 15 6 2.8625 -2.8269 7.3530 16 6 4.1529 -3.0912 8.1361 17 8 5.3048 -2.4409 7.5957 18 6 4.0178 -2.9280 9.6282 19 1 3.7970 -3.7849 10.2474 20 6 4.1763 -1.6848 10.2029 21 7 4.4449 -0.6413 9.4489 22 14 4.0096 -1.4827 12.0525 23 1 5.3359 -1.6731 12.6927 24 1 3.5036 -0.1203 12.3579 25 1 3.0570 -2.4938 12.5771 26 6 3.9514 -4.5293 7.6394 27 6 2.8924 -2.3862 3.6020 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1300 1.4427 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6768 -1.7488 -1.2494 35 1 1.6767 -0.2072 -2.1392 36 1 3.1300 -0.7207 -1.2496 37 1 0.8967 -4.4372 2.7606 38 1 2.6836 -4.7177 2.6087 39 1 0.1119 -3.8020 5.0953 40 1 1.0580 -2.6028 6.0095 41 1 0.3862 -2.1796 4.4167 42 1 2.8666 -1.8756 6.8208 43 1 1.9582 -2.9766 7.9429 44 1 5.4290 -1.5351 7.9106 45 1 4.5560 0.2334 9.8531 46 1 3.3404 -5.1374 8.3064 47 1 4.8793 -5.0226 7.3502 48 1 3.9458 -2.6306 3.4650 49 1 2.7414 -1.3869 4.0104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495996509.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:37 Heat of formation + Delta-G solvation = -81.805008 kcal Electronic energy + Delta-G solvation = -31100.291460 eV Core-core repulsion = 26837.948776 eV Total energy + Delta-G solvation = -4262.342685 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -41.26629 -40.25450 -39.02137 -37.23616 -36.49098 -34.18343 -34.11376 -32.25744 -31.66431 -28.69594 -27.60723 -27.56204 -27.35996 -26.22502 -25.55039 -25.15546 -22.98338 -21.38239 -19.77506 -19.15779 -18.21611 -17.85668 -17.38581 -16.84333 -16.65667 -16.04712 -15.66596 -15.41261 -15.15048 -14.75911 -14.45363 -14.33019 -14.14362 -13.71826 -13.60660 -13.26103 -13.24425 -12.89039 -12.67836 -12.52491 -12.42847 -12.20304 -12.09196 -12.07429 -11.91301 -11.86252 -11.80630 -11.61366 -11.52403 -11.39082 -11.12723 -11.07988 -10.58772 -10.50738 -10.50248 -10.32853 -10.16133 -9.68021 -9.29177 -8.88260 -8.81659 -8.45641 -7.95507 -6.46574 -4.56820 1.86310 2.77494 2.91468 3.10840 3.19360 3.21218 3.41720 3.66881 4.13153 4.18827 4.52694 4.57149 4.61676 4.71051 4.74641 4.89173 4.93674 5.06598 5.26865 5.33661 5.39447 5.46114 5.49166 5.49983 5.52080 5.56916 5.66229 5.67199 5.73562 5.77920 5.80410 5.84303 5.88260 6.09407 6.09751 6.13618 6.18012 6.33938 6.39200 6.40466 6.53219 6.61709 7.03422 7.56977 7.60354 7.73590 8.25598 8.36796 8.46993 8.60446 9.14856 9.42043 10.60054 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015846 B = 0.002723 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.594194 B =10279.775594 C =11306.543865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.359 6.359 6 C 0.684 3.316 7 O -0.570 6.570 8 N -0.633 5.633 9 C 0.155 3.845 10 C -0.117 4.117 11 C -0.128 4.128 12 C 0.556 3.444 13 O -0.558 6.558 14 N -0.627 5.627 15 C 0.072 3.928 16 C 0.240 3.760 17 O -0.571 6.571 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.897 5.897 22 Si 0.908 3.092 23 H -0.277 1.277 24 H -0.284 1.284 25 H -0.271 1.271 26 C 0.107 3.893 27 C 0.127 3.873 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.394 0.606 45 H 0.274 0.726 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.094 0.906 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.809 3.733 -12.996 15.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.274 6.274 6 C 0.441 3.559 7 O -0.460 6.460 8 N -0.375 5.375 9 C 0.034 3.966 10 C -0.121 4.121 11 C -0.185 4.185 12 C 0.344 3.656 13 O -0.438 6.438 14 N -0.359 5.359 15 C -0.051 4.051 16 C 0.198 3.802 17 O -0.385 6.385 18 C -0.572 4.572 19 H 0.091 0.909 20 C -0.130 4.130 21 N -0.538 5.538 22 Si 0.735 3.265 23 H -0.202 1.202 24 H -0.209 1.209 25 H -0.195 1.195 26 C -0.015 4.015 27 C 0.004 3.996 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.251 0.749 45 H 0.085 0.915 46 H 0.105 0.895 47 H 0.086 0.914 48 H 0.112 0.888 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.816 2.815 -14.243 16.039 hybrid contribution -0.218 0.846 1.105 1.409 sum -7.034 3.661 -13.138 15.346 Atomic orbital electron populations 1.22519 0.94022 1.05041 1.02446 1.22081 0.94389 0.91572 0.82137 1.21859 1.02364 0.92449 1.03105 1.22515 1.01620 1.03462 0.96440 1.86339 1.71319 1.23455 1.46296 1.17166 0.78661 0.80293 0.79786 1.90887 1.42046 1.70801 1.42244 1.48047 1.53388 1.14684 1.21363 1.22929 1.03792 0.82662 0.87239 1.22325 0.97933 0.97613 0.94227 1.21641 0.93863 1.01522 1.01495 1.19188 0.80290 0.85278 0.80830 1.90660 1.54032 1.25070 1.74070 1.49645 1.51346 1.25817 1.09044 1.24224 1.02648 0.87911 0.90349 1.19491 0.82491 0.87393 0.90815 1.86045 1.45580 1.34728 1.72102 1.21418 1.49625 0.94963 0.91194 0.90916 1.25068 0.93145 0.95360 0.99416 1.69248 1.48223 1.00286 1.36019 0.86320 0.78725 0.77663 0.83764 1.20235 1.20908 1.19539 1.23368 0.94952 0.99025 0.84199 1.23023 0.95757 0.99617 0.81235 0.92100 0.91208 0.89413 0.91406 0.90182 0.91349 0.89437 0.91180 0.92154 0.89516 0.87876 0.91463 0.90218 0.91604 0.91504 0.89880 0.74916 0.91533 0.89536 0.91424 0.88802 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 8.37 37.16 0.31 -1.59 16 2 C 0.13 1.49 1.13 -90.62 -0.10 1.38 16 3 C -0.14 -1.18 8.85 37.16 0.33 -0.85 16 4 C -0.18 -1.92 8.37 37.16 0.31 -1.61 16 5 O -0.36 -5.00 9.91 -40.33 -0.40 -5.40 16 6 C 0.68 10.43 8.26 54.06 0.45 10.88 16 7 O -0.57 -9.45 12.66 -19.28 -0.24 -9.70 16 8 N -0.63 -9.16 3.50 -190.82 -0.67 -9.83 16 9 C 0.16 2.17 7.55 -8.50 -0.06 2.11 16 10 C -0.12 -1.71 1.34 -155.07 -0.21 -1.92 16 11 C -0.13 -1.65 9.15 37.16 0.34 -1.31 16 12 C 0.56 10.19 7.26 -10.99 -0.08 10.11 16 13 O -0.56 -11.73 16.72 5.56 0.09 -11.64 16 14 N -0.63 -11.98 3.64 -185.39 -0.68 -12.65 16 15 C 0.07 1.38 5.62 -8.64 -0.05 1.33 16 16 C 0.24 5.34 1.57 -91.40 -0.14 5.20 16 17 O -0.57 -13.81 13.53 -35.23 -0.48 -14.28 16 18 C -0.53 -12.57 8.69 -34.44 -0.30 -12.87 16 19 H 0.07 1.67 7.81 -52.48 -0.41 1.26 16 20 C 0.07 1.71 5.40 -17.82 -0.10 1.62 16 21 N -0.90 -21.51 11.01 55.43 0.61 -20.90 16 22 Si 0.91 18.57 29.54 -169.99 -5.02 13.55 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 C 0.11 2.16 8.03 -8.52 -0.07 2.09 16 27 C 0.13 1.79 7.75 -8.43 -0.07 1.73 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.12 5.88 -51.93 -0.31 0.81 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 1.13 5.88 -51.93 -0.31 0.82 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.12 8.12 -51.93 -0.42 0.70 16 38 H 0.10 1.50 7.45 -51.93 -0.39 1.12 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.08 1.08 5.17 -51.93 -0.27 0.81 16 41 H 0.06 0.80 7.92 -51.93 -0.41 0.39 16 42 H 0.07 1.28 7.89 -51.93 -0.41 0.87 16 43 H 0.08 1.52 7.97 -51.93 -0.41 1.11 16 44 H 0.39 9.69 6.33 45.56 0.29 9.97 16 45 H 0.27 6.28 8.31 -40.82 -0.34 5.95 16 46 H 0.09 1.60 8.10 -51.93 -0.42 1.18 16 47 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 48 H 0.09 1.36 8.10 -51.93 -0.42 0.94 16 49 H 0.09 1.23 8.12 -51.93 -0.42 0.81 16 LS Contribution 395.51 15.07 5.96 5.96 Total: -1.00 -27.77 395.51 -7.50 -35.27 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -7.25 Total: 13.32 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 0.56 Total: 16.30 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: -0.73 Total: -43.38 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -1.03 Total: -41.02 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -27.77 -7.50 -35.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495996509.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.533 kcal (2) G-P(sol) polarization free energy of solvation -27.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds