Wall clock time and date at job start Sat Apr 11 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46882 * 2 1 4 4 C 1.53000 * 109.47159 * 240.00586 * 2 1 3 5 5 O 1.45191 * 109.47520 * 120.00114 * 2 1 3 6 6 C 1.34641 * 116.99892 * 60.00499 * 5 2 1 7 7 O 1.21512 * 119.99885 * 359.97438 * 6 5 2 8 8 N 1.34779 * 120.00049 * 180.02562 * 6 5 2 9 9 C 1.47066 * 136.05579 * 180.02562 * 8 6 5 10 10 C 1.53504 * 88.04678 * 207.05024 * 9 8 6 11 11 C 1.53000 * 114.20366 * 87.54725 * 10 9 8 12 12 C 1.50703 * 114.20523 * 220.37340 * 10 9 8 13 13 O 1.21282 * 120.00012 * 0.02562 * 12 10 9 14 14 N 1.34773 * 119.99733 * 180.02562 * 12 10 9 15 15 C 1.47070 * 136.05916 * 359.62381 * 14 12 10 16 16 C 1.53238 * 88.08264 * 207.21026 * 15 14 12 17 17 O 1.42893 * 114.01980 * 87.71891 * 16 15 14 18 18 C 1.50700 * 114.32078 * 220.47217 * 16 15 14 19 19 H 1.08005 * 120.00244 * 93.76265 * 18 16 15 20 20 C 1.37875 * 120.00081 * 273.75263 * 18 16 15 21 21 N 1.31508 * 120.00009 * 0.02562 * 20 18 16 22 22 Si 1.86806 * 119.99937 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46925 * 90.00648 * 22 20 18 24 24 H 1.48507 * 109.46833 * 210.00112 * 22 20 18 25 25 H 1.48493 * 109.47322 * 330.00717 * 22 20 18 26 26 C 1.47064 * 136.05636 * 180.02562 * 14 12 10 27 27 C 1.47064 * 136.05760 * 359.93904 * 8 6 5 28 28 H 1.08998 * 109.46771 * 299.99242 * 1 2 3 29 29 H 1.08997 * 109.47137 * 59.99920 * 1 2 3 30 30 H 1.09002 * 109.46571 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47510 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47630 * 300.00395 * 3 2 1 33 33 H 1.09006 * 109.47016 * 60.00567 * 3 2 1 34 34 H 1.08998 * 109.47324 * 299.99566 * 4 2 1 35 35 H 1.08999 * 109.47005 * 59.99817 * 4 2 1 36 36 H 1.09000 * 109.47444 * 179.97438 * 4 2 1 37 37 H 1.09002 * 113.46793 * 321.85996 * 9 8 6 38 38 H 1.08999 * 113.46805 * 92.24363 * 9 8 6 39 39 H 1.08997 * 109.47298 * 60.00240 * 11 10 9 40 40 H 1.09001 * 109.46890 * 180.02562 * 11 10 9 41 41 H 1.08999 * 109.46995 * 300.00021 * 11 10 9 42 42 H 1.09000 * 113.46768 * 321.94420 * 15 14 12 43 43 H 1.09000 * 113.46170 * 92.38169 * 15 14 12 44 44 H 0.96700 * 113.99707 * 86.38753 * 17 16 15 45 45 H 0.96997 * 120.00246 * 179.97438 * 21 20 18 46 46 H 1.08995 * 113.46858 * 267.62308 * 26 14 12 47 47 H 1.08998 * 113.46725 * 38.05955 * 26 14 12 48 48 H 1.08999 * 113.47096 * 267.69948 * 27 8 6 49 49 H 1.09005 * 113.46966 * 38.08340 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0141 -0.6844 1.1854 6 6 1.6524 -1.9724 1.3381 7 8 0.9511 -2.5095 0.5038 8 7 2.0675 -2.6655 2.4169 9 6 1.8960 -4.0344 2.9263 10 6 2.1037 -3.4777 4.3416 11 6 0.8228 -2.9798 5.0141 12 6 2.9465 -4.3535 5.2326 13 8 3.3942 -5.3977 4.8083 14 7 3.2027 -3.9762 6.5008 15 6 2.8625 -2.8269 7.3530 16 6 4.1529 -3.0912 8.1361 17 8 5.3048 -2.4409 7.5957 18 6 4.0178 -2.9280 9.6282 19 1 3.7970 -3.7849 10.2474 20 6 4.1763 -1.6848 10.2029 21 7 4.4449 -0.6413 9.4489 22 14 4.0096 -1.4827 12.0525 23 1 5.3359 -1.6731 12.6927 24 1 3.5036 -0.1203 12.3579 25 1 3.0570 -2.4938 12.5771 26 6 3.9514 -4.5293 7.6394 27 6 2.8924 -2.3862 3.6020 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1300 1.4427 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6768 -1.7488 -1.2494 35 1 1.6767 -0.2072 -2.1392 36 1 3.1300 -0.7207 -1.2496 37 1 0.8967 -4.4372 2.7606 38 1 2.6836 -4.7177 2.6087 39 1 0.1119 -3.8020 5.0953 40 1 1.0580 -2.6028 6.0095 41 1 0.3862 -2.1796 4.4167 42 1 2.8666 -1.8756 6.8208 43 1 1.9582 -2.9766 7.9429 44 1 5.4290 -1.5351 7.9106 45 1 4.5560 0.2334 9.8531 46 1 3.3404 -5.1374 8.3064 47 1 4.8793 -5.0226 7.3502 48 1 3.9458 -2.6306 3.4650 49 1 2.7414 -1.3869 4.0104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495996509.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:36 Heat of formation + Delta-G solvation = -100.016812 kcal Electronic energy + Delta-G solvation = -31101.081183 eV Core-core repulsion = 26837.948776 eV Total energy + Delta-G solvation = -4263.132408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.47626 -41.48303 -40.44689 -38.71082 -37.65432 -35.87395 -35.11235 -34.07553 -32.86986 -30.28489 -28.48822 -28.37553 -28.31116 -27.46879 -27.16714 -26.72023 -24.25796 -22.56718 -21.22193 -20.34104 -19.67785 -19.19959 -18.85214 -18.07164 -17.77076 -17.48568 -17.08418 -16.70721 -16.56875 -16.08991 -15.92992 -15.48304 -15.26122 -14.94522 -14.89660 -14.66578 -14.45490 -14.23941 -13.89454 -13.79454 -13.41288 -13.36918 -13.35929 -13.15859 -12.97398 -12.90937 -12.89028 -12.85176 -12.77182 -12.72910 -12.48069 -12.31972 -12.18342 -12.10477 -11.71863 -11.43206 -11.36884 -11.19315 -10.88032 -10.60301 -10.17219 -10.02676 -9.56694 -8.23840 -6.39665 0.78460 1.46492 1.49459 1.54060 1.60043 1.61954 1.96496 2.43722 2.59220 2.98638 2.99970 3.39181 3.53292 3.73088 3.76927 3.79011 3.84560 3.92703 4.01534 4.18030 4.30341 4.33896 4.44304 4.47690 4.57416 4.60873 4.67130 4.68744 4.70191 4.74620 4.75405 4.79967 4.84601 4.85935 4.86336 4.95594 5.01810 5.10853 5.16160 5.26688 5.30050 5.30886 5.41388 5.77606 5.95754 6.44995 6.65910 6.85761 7.08093 7.12023 7.34152 7.54628 8.81883 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015846 B = 0.002723 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.594194 B =10279.775594 C =11306.543865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.121 3.879 3 C -0.136 4.136 4 C -0.179 4.179 5 O -0.367 6.367 6 C 0.682 3.318 7 O -0.586 6.586 8 N -0.633 5.633 9 C 0.157 3.843 10 C -0.109 4.109 11 C -0.121 4.121 12 C 0.555 3.445 13 O -0.587 6.587 14 N -0.627 5.627 15 C 0.090 3.910 16 C 0.217 3.783 17 O -0.585 6.585 18 C -0.550 4.550 19 H 0.074 0.926 20 C 0.035 3.965 21 N -0.914 5.914 22 Si 0.965 3.035 23 H -0.282 1.282 24 H -0.282 1.282 25 H -0.266 1.266 26 C 0.106 3.894 27 C 0.130 3.870 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.389 0.611 45 H 0.276 0.724 46 H 0.105 0.895 47 H 0.054 0.946 48 H 0.087 0.913 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.079 4.887 -13.237 16.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.085 3.915 3 C -0.193 4.193 4 C -0.236 4.236 5 O -0.282 6.282 6 C 0.439 3.561 7 O -0.477 6.477 8 N -0.374 5.374 9 C 0.035 3.965 10 C -0.112 4.112 11 C -0.178 4.178 12 C 0.345 3.655 13 O -0.469 6.469 14 N -0.358 5.358 15 C -0.033 4.033 16 C 0.176 3.824 17 O -0.399 6.399 18 C -0.588 4.588 19 H 0.092 0.908 20 C -0.166 4.166 21 N -0.555 5.555 22 Si 0.791 3.209 23 H -0.208 1.208 24 H -0.208 1.208 25 H -0.190 1.190 26 C -0.016 4.016 27 C 0.006 3.994 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.125 0.875 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.077 0.923 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.245 0.755 45 H 0.086 0.914 46 H 0.123 0.877 47 H 0.072 0.928 48 H 0.105 0.895 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.093 3.974 -14.491 17.067 hybrid contribution 0.226 0.476 1.124 1.242 sum -7.867 4.450 -13.367 16.136 Atomic orbital electron populations 1.22468 0.93564 1.03702 1.03784 1.22525 0.94979 0.92706 0.81310 1.21894 1.02316 0.90588 1.04466 1.22472 1.01507 1.02164 0.97465 1.86353 1.71428 1.22687 1.47752 1.17280 0.78481 0.80742 0.79612 1.90885 1.42784 1.71310 1.42771 1.48036 1.53279 1.14772 1.21348 1.22909 1.04293 0.82548 0.86709 1.22277 0.98151 0.97127 0.93692 1.21618 0.92987 1.02210 1.01015 1.19769 0.79970 0.85258 0.80538 1.90645 1.55242 1.26593 1.74447 1.49644 1.51265 1.25630 1.09275 1.23985 1.01559 0.87925 0.89824 1.19769 0.83165 0.88549 0.90914 1.86032 1.46935 1.34531 1.72355 1.21648 1.49905 0.95199 0.92026 0.90814 1.25689 0.92982 0.95184 1.02727 1.69306 1.48533 1.00516 1.37179 0.85435 0.78281 0.77545 0.79636 1.20756 1.20770 1.19024 1.23369 0.95052 0.98176 0.85027 1.22999 0.95360 0.99901 0.81094 0.91976 0.88655 0.91977 0.91520 0.87456 0.91327 0.92091 0.88547 0.92260 0.88183 0.88698 0.90204 0.90725 0.90630 0.91389 0.88487 0.75473 0.91419 0.87726 0.92783 0.89489 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.42 8.37 71.98 0.60 -2.82 16 2 C 0.12 2.47 1.13 -10.79 -0.01 2.46 16 3 C -0.14 -1.94 8.85 71.98 0.64 -1.30 16 4 C -0.18 -3.53 8.37 71.98 0.60 -2.93 16 5 O -0.37 -9.92 9.91 -55.50 -0.55 -10.47 16 6 C 0.68 20.44 8.26 129.79 1.07 21.51 16 7 O -0.59 -19.37 12.66 19.80 0.25 -19.12 16 8 N -0.63 -17.89 3.50 -988.02 -3.45 -21.34 16 9 C 0.16 4.28 7.55 83.18 0.63 4.91 16 10 C -0.11 -3.06 1.34 -52.54 -0.07 -3.13 16 11 C -0.12 -2.88 9.15 71.98 0.66 -2.22 16 12 C 0.56 20.03 7.26 87.66 0.64 20.67 16 13 O -0.59 -24.68 16.72 -3.04 -0.05 -24.73 16 14 N -0.63 -23.55 3.64 -859.33 -3.13 -26.68 16 15 C 0.09 3.37 5.62 83.09 0.47 3.83 16 16 C 0.22 9.62 1.57 -11.30 -0.02 9.60 16 17 O -0.59 -28.59 13.53 -148.98 -2.02 -30.61 16 18 C -0.55 -25.57 8.69 25.60 0.22 -25.35 16 19 H 0.07 3.33 7.81 -2.91 -0.02 3.31 16 20 C 0.03 1.62 5.40 84.66 0.46 2.07 16 21 N -0.91 -43.48 11.01 21.45 0.24 -43.24 16 22 Si 0.97 37.42 29.54 68.60 2.03 39.45 16 23 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.28 -10.80 7.11 99.48 0.71 -10.10 16 25 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 26 C 0.11 4.27 8.03 83.17 0.67 4.94 16 27 C 0.13 3.58 7.75 83.23 0.65 4.22 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.54 5.88 -2.39 -0.01 1.53 16 31 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.06 1.55 5.88 -2.39 -0.01 1.54 16 35 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 2.47 8.12 -2.39 -0.02 2.45 16 38 H 0.09 2.77 7.45 -2.39 -0.02 2.75 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.07 1.87 5.17 -2.39 -0.01 1.85 16 41 H 0.07 1.67 7.92 -2.39 -0.02 1.66 16 42 H 0.07 2.53 7.89 -2.39 -0.02 2.52 16 43 H 0.10 3.38 7.97 -2.39 -0.02 3.36 16 44 H 0.39 19.40 6.33 -74.06 -0.47 18.93 16 45 H 0.28 12.50 8.31 -92.71 -0.77 11.73 16 46 H 0.10 3.78 8.10 -2.39 -0.02 3.76 16 47 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 48 H 0.09 2.52 8.10 -2.39 -0.02 2.50 16 49 H 0.10 2.60 8.12 -2.38 -0.02 2.58 16 Total: -1.00 -58.90 395.51 1.00 -57.90 By element: Atomic # 1 Polarization: 41.87 SS G_CDS: 0.49 Total: 42.37 kcal Atomic # 6 Polarization: 29.28 SS G_CDS: 7.20 Total: 36.48 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -6.35 Total: -91.26 kcal Atomic # 8 Polarization: -82.57 SS G_CDS: -2.37 Total: -84.93 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal Total: -58.90 1.00 -57.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495996509.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.117 kcal (2) G-P(sol) polarization free energy of solvation -58.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds