Wall clock time and date at job start Sat Apr 11 2020 06:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99777 * 2 1 4 4 H 1.48502 * 109.47441 * 270.00432 * 3 2 1 5 5 H 1.48505 * 109.47074 * 30.00285 * 3 2 1 6 6 H 1.48496 * 109.46938 * 150.00234 * 3 2 1 7 7 C 1.37873 * 120.00444 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99847 * 359.97438 * 7 2 1 10 10 C 1.53116 * 109.52374 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.28015 * 177.55950 * 10 9 7 12 12 N 1.46849 * 109.52416 * 300.82246 * 11 10 9 13 13 C 1.38177 * 110.99941 * 185.83698 * 12 11 10 14 14 N 1.31585 * 126.36184 * 359.97438 * 13 12 11 15 15 N 1.28520 * 110.05885 * 180.02562 * 14 13 12 16 16 C 1.31310 * 109.89200 * 0.02562 * 15 14 13 17 17 C 1.47703 * 126.46738 * 180.02562 * 16 15 14 18 18 N 1.32816 * 119.24284 * 185.27748 * 17 16 15 19 19 C 1.32146 * 120.71751 * 179.71800 * 18 17 16 20 20 C 1.38726 * 119.22331 * 0.53973 * 19 18 17 21 21 C 1.38722 * 118.60311 * 359.73057 * 20 19 18 22 22 N 1.32143 * 119.22476 * 0.02562 * 21 20 19 23 23 N 1.36241 * 126.35676 * 179.97438 * 13 12 11 24 24 C 1.46509 * 127.14641 * 359.72122 * 23 13 12 25 25 C 1.53003 * 117.49635 * 313.15727 * 24 23 13 26 26 C 1.52998 * 117.49466 * 244.53362 * 24 23 13 27 27 C 1.46856 * 111.19562 * 61.74021 * 12 11 10 28 28 C 1.53036 * 109.52259 * 298.25542 * 27 12 11 29 29 H 0.96996 * 120.00453 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.57559 * 59.84315 * 9 7 2 31 31 H 1.09006 * 109.49986 * 57.62237 * 10 9 7 32 32 H 1.08998 * 109.50404 * 297.50350 * 10 9 7 33 33 H 1.08998 * 109.46628 * 180.80519 * 11 10 9 34 34 H 1.09002 * 109.46143 * 60.84075 * 11 10 9 35 35 H 1.08001 * 120.38726 * 180.28900 * 19 18 17 36 36 H 1.07999 * 120.69714 * 179.75547 * 20 19 18 37 37 H 1.08005 * 120.38717 * 180.02562 * 21 20 19 38 38 H 1.08995 * 115.54716 * 98.86509 * 24 23 13 39 39 H 1.08995 * 117.49870 * 359.97438 * 25 24 23 40 40 H 1.09000 * 117.49563 * 145.02102 * 25 24 23 41 41 H 1.09001 * 117.49716 * 214.97814 * 26 24 23 42 42 H 1.08998 * 117.50358 * 0.02562 * 26 24 23 43 43 H 1.09002 * 109.46095 * 58.27857 * 27 12 11 44 44 H 1.08996 * 109.46018 * 178.24290 * 27 12 11 45 45 H 1.08998 * 109.50743 * 299.24131 * 28 27 12 46 46 H 1.09002 * 109.50060 * 179.11510 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2452 -3.6638 -0.0018 11 6 1.4755 -4.9851 0.0597 12 7 0.6556 -5.0192 1.2775 13 6 0.0479 -6.2506 1.4310 14 7 0.1592 -7.2819 0.6213 15 7 -0.5384 -8.2666 1.0632 16 6 -1.1373 -7.9241 2.1804 17 6 -2.0270 -8.7752 2.9962 18 7 -2.6427 -8.2488 4.0487 19 6 -3.4493 -8.9822 4.7955 20 6 -3.6402 -10.3184 4.4755 21 6 -2.9779 -10.8385 3.3731 22 7 -2.1885 -10.0509 2.6640 23 7 -0.7779 -6.6225 2.4488 24 6 -1.1929 -5.8082 3.5938 25 6 -0.1057 -5.0323 4.3400 26 6 -0.7453 -6.2640 4.9840 27 6 -0.3383 -3.9380 1.2789 28 6 0.3773 -2.5855 1.2539 29 1 -0.4850 0.8400 0.0004 30 1 0.6214 -2.5573 -0.8884 31 1 2.9006 -3.5837 0.8655 32 1 2.8416 -3.6322 -0.9136 33 1 2.1807 -5.8160 0.0734 34 1 0.8306 -5.0707 -0.8149 35 1 -3.9509 -8.5474 5.6475 36 1 -4.2911 -10.9407 5.0719 37 1 -3.1060 -11.8749 3.0976 38 1 -2.1750 -5.3432 3.5086 39 1 0.9184 -5.1280 3.9792 40 1 -0.3724 -4.0564 4.7457 41 1 -1.4327 -6.0985 5.8135 42 1 -0.1417 -7.1695 5.0468 43 1 -0.9747 -4.0286 0.3987 44 1 -0.9502 -4.0085 2.1781 45 1 1.0034 -2.4885 2.1409 46 1 -0.3607 -1.7835 1.2391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563313055.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:44 Heat of formation + Delta-G solvation = 175.212990 kcal Electronic energy + Delta-G solvation = -29815.503120 eV Core-core repulsion = 25936.199994 eV Total energy + Delta-G solvation = -3879.303126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.171 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.86954 -41.11018 -38.49797 -37.54371 -34.24482 -34.08767 -33.18780 -32.44112 -31.34462 -30.13246 -28.96236 -26.02360 -25.13918 -24.76322 -23.71369 -23.05090 -22.36027 -22.05515 -20.87905 -20.31394 -18.84215 -18.04330 -17.62723 -17.03480 -16.52063 -16.30136 -15.89127 -15.81742 -15.13354 -14.75473 -14.59912 -14.50083 -14.03838 -13.89447 -13.70695 -13.14031 -12.90105 -12.62847 -12.44708 -11.70038 -11.65808 -11.56277 -11.41159 -11.26187 -11.18878 -11.09958 -10.98127 -10.82455 -10.63509 -10.49352 -10.35177 -10.24633 -10.09589 -9.95754 -9.64307 -9.51642 -9.29898 -9.06475 -8.81748 -8.37132 -7.86905 -6.04155 -4.09222 0.20843 0.76629 1.92343 2.10341 2.86583 3.26364 3.28227 3.35372 3.38656 3.44696 3.61931 3.78506 3.95568 4.21877 4.40697 4.49775 4.57707 4.60581 4.72095 4.79188 4.90039 5.11591 5.25593 5.26368 5.43649 5.50161 5.61631 5.71167 5.72932 5.83885 5.89553 5.92496 5.98019 5.99799 6.02474 6.20654 6.29742 6.49864 6.52718 6.68064 6.72123 6.88610 7.00772 7.25854 7.29476 7.49883 7.67956 7.69614 7.92279 8.02489 8.39210 8.82341 8.94305 9.55840 11.02410 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.023730 B = 0.002736 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.663031 B =10229.858523 C =10883.515840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.509 4.509 8 H 0.056 0.944 9 C 0.045 3.955 10 C -0.108 4.108 11 C 0.073 3.927 12 N -0.443 5.443 13 C 0.401 3.599 14 N -0.329 5.329 15 N -0.216 5.216 16 C 0.193 3.807 17 C 0.413 3.587 18 N -0.503 5.503 19 C 0.153 3.847 20 C -0.232 4.232 21 C 0.155 3.845 22 N -0.483 5.483 23 N -0.439 5.439 24 C 0.068 3.932 25 C -0.160 4.160 26 C -0.146 4.146 27 C 0.055 3.945 28 C -0.102 4.102 29 H 0.260 0.740 30 H 0.025 0.975 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.173 0.827 36 H 0.150 0.850 37 H 0.174 0.826 38 H 0.134 0.866 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.039 0.961 44 H 0.066 0.934 45 H 0.049 0.951 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.682 -17.035 13.559 23.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.547 4.547 8 H 0.075 0.925 9 C 0.026 3.974 10 C -0.146 4.146 11 C -0.053 4.053 12 N -0.166 5.166 13 C 0.046 3.954 14 N -0.178 5.178 15 N -0.060 5.060 16 C -0.071 4.071 17 C 0.146 3.854 18 N -0.218 5.218 19 C -0.013 4.013 20 C -0.255 4.255 21 C -0.012 4.012 22 N -0.198 5.198 23 N -0.134 5.134 24 C -0.036 4.036 25 C -0.198 4.198 26 C -0.183 4.183 27 C -0.070 4.070 28 C -0.140 4.140 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.190 0.810 36 H 0.168 0.832 37 H 0.191 0.809 38 H 0.152 0.848 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.127 0.873 42 H 0.109 0.891 43 H 0.057 0.943 44 H 0.085 0.915 45 H 0.067 0.933 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.465 -17.007 12.231 22.238 hybrid contribution -1.141 0.948 1.102 1.848 sum -8.607 -16.059 13.333 22.577 Atomic orbital electron populations 1.69850 1.05877 1.26454 1.51013 1.24962 0.94843 0.99064 0.95094 0.86619 0.79898 0.83528 0.78100 1.20751 1.21321 1.19929 1.21165 0.92966 0.90393 1.50211 0.92543 1.18741 0.92759 0.91988 0.93896 1.21775 0.98777 0.92873 1.01193 1.22207 0.95551 1.00377 0.87133 1.58675 1.21092 0.97008 1.39862 1.23064 0.90715 0.95635 0.86004 1.74936 1.22650 0.97730 1.22485 1.74401 1.05396 1.20433 1.05801 1.20925 1.04904 0.83405 0.97905 1.19141 0.90920 0.86926 0.88376 1.68459 1.08602 1.39233 1.05497 1.23220 0.91180 0.90533 0.96417 1.23017 1.03575 0.98262 1.00650 1.23319 0.88611 0.99957 0.89340 1.68379 1.16920 1.04155 1.30345 1.45399 1.37422 1.10798 1.19824 1.21801 0.99421 0.99346 0.83068 1.23511 0.98618 0.96935 1.00689 1.23135 1.02666 0.98629 0.93907 1.22637 0.92417 0.91718 1.00276 1.21735 1.00482 0.91739 1.00031 0.93015 0.95665 0.92167 0.91950 0.90562 0.93359 0.81008 0.83183 0.80864 0.84835 0.86985 0.86722 0.87315 0.89120 0.94257 0.91529 0.93250 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.37 11.38 55.43 0.63 -23.74 16 2 C 0.06 1.63 5.31 -17.82 -0.09 1.53 16 3 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.51 -13.33 8.56 -34.44 -0.29 -13.62 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.04 1.05 2.16 -91.65 -0.20 0.85 16 10 C -0.11 -2.17 5.32 -26.65 -0.14 -2.32 16 11 C 0.07 1.37 4.87 -3.83 -0.02 1.35 16 12 N -0.44 -8.05 4.21 -174.64 -0.74 -8.79 16 13 C 0.40 7.34 7.03 -319.29 -2.24 5.10 16 14 N -0.33 -6.56 11.22 30.25 0.34 -6.22 16 15 N -0.22 -4.20 12.19 32.58 0.40 -3.80 16 16 C 0.19 3.28 7.91 -153.70 -1.22 2.06 16 17 C 0.41 5.81 7.58 -156.84 -1.19 4.62 16 18 N -0.50 -5.59 7.73 -11.23 -0.09 -5.68 16 19 C 0.15 1.10 11.30 -17.24 -0.19 0.90 16 20 C -0.23 -1.35 10.17 -39.22 -0.40 -1.75 16 21 C 0.15 1.26 11.30 -17.24 -0.19 1.07 16 22 N -0.48 -6.33 10.34 -11.23 -0.12 -6.45 16 23 N -0.44 -7.08 3.11 -107.69 -0.33 -7.41 16 24 C 0.07 0.86 3.61 -67.93 -0.25 0.61 16 25 C -0.16 -1.87 8.90 -26.73 -0.24 -2.11 16 26 C -0.15 -1.50 9.10 -26.73 -0.24 -1.75 16 27 C 0.06 1.02 5.07 -3.83 -0.02 1.01 16 28 C -0.10 -2.20 5.12 -26.65 -0.14 -2.33 16 29 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.08 1.37 7.91 -51.93 -0.41 0.96 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.15 0.33 8.06 -52.49 -0.42 -0.09 16 37 H 0.17 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.13 1.59 8.12 -51.93 -0.42 1.17 16 39 H 0.11 1.55 8.01 -51.93 -0.42 1.13 16 40 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 1.10 5.10 -51.93 -0.27 0.84 16 45 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.10 2.44 6.18 -51.93 -0.32 2.12 16 LS Contribution 373.17 15.07 5.62 5.62 Total: -1.00 -31.67 373.17 -12.82 -44.49 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.45 Total: 1.12 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -7.07 Total: -4.78 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: 0.09 Total: -62.09 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.67 -12.82 -44.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563313055.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.708 kcal (2) G-P(sol) polarization free energy of solvation -31.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds