Wall clock time and date at job start Sat Apr 11 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99777 * 2 1 4 4 H 1.48502 * 109.47441 * 270.00432 * 3 2 1 5 5 H 1.48505 * 109.47074 * 30.00285 * 3 2 1 6 6 H 1.48496 * 109.46938 * 150.00234 * 3 2 1 7 7 C 1.37873 * 120.00444 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99847 * 359.97438 * 7 2 1 10 10 C 1.53116 * 109.52374 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.28015 * 177.55950 * 10 9 7 12 12 N 1.46849 * 109.52416 * 300.82246 * 11 10 9 13 13 C 1.38177 * 110.99941 * 185.83698 * 12 11 10 14 14 N 1.31585 * 126.36184 * 359.97438 * 13 12 11 15 15 N 1.28520 * 110.05885 * 180.02562 * 14 13 12 16 16 C 1.31310 * 109.89200 * 0.02562 * 15 14 13 17 17 C 1.47703 * 126.46738 * 180.02562 * 16 15 14 18 18 N 1.32816 * 119.24284 * 185.27748 * 17 16 15 19 19 C 1.32146 * 120.71751 * 179.71800 * 18 17 16 20 20 C 1.38726 * 119.22331 * 0.53973 * 19 18 17 21 21 C 1.38722 * 118.60311 * 359.73057 * 20 19 18 22 22 N 1.32143 * 119.22476 * 0.02562 * 21 20 19 23 23 N 1.36241 * 126.35676 * 179.97438 * 13 12 11 24 24 C 1.46509 * 127.14641 * 359.72122 * 23 13 12 25 25 C 1.53003 * 117.49635 * 313.15727 * 24 23 13 26 26 C 1.52998 * 117.49466 * 244.53362 * 24 23 13 27 27 C 1.46856 * 111.19562 * 61.74021 * 12 11 10 28 28 C 1.53036 * 109.52259 * 298.25542 * 27 12 11 29 29 H 0.96996 * 120.00453 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.57559 * 59.84315 * 9 7 2 31 31 H 1.09006 * 109.49986 * 57.62237 * 10 9 7 32 32 H 1.08998 * 109.50404 * 297.50350 * 10 9 7 33 33 H 1.08998 * 109.46628 * 180.80519 * 11 10 9 34 34 H 1.09002 * 109.46143 * 60.84075 * 11 10 9 35 35 H 1.08001 * 120.38726 * 180.28900 * 19 18 17 36 36 H 1.07999 * 120.69714 * 179.75547 * 20 19 18 37 37 H 1.08005 * 120.38717 * 180.02562 * 21 20 19 38 38 H 1.08995 * 115.54716 * 98.86509 * 24 23 13 39 39 H 1.08995 * 117.49870 * 359.97438 * 25 24 23 40 40 H 1.09000 * 117.49563 * 145.02102 * 25 24 23 41 41 H 1.09001 * 117.49716 * 214.97814 * 26 24 23 42 42 H 1.08998 * 117.50358 * 0.02562 * 26 24 23 43 43 H 1.09002 * 109.46095 * 58.27857 * 27 12 11 44 44 H 1.08996 * 109.46018 * 178.24290 * 27 12 11 45 45 H 1.08998 * 109.50743 * 299.24131 * 28 27 12 46 46 H 1.09002 * 109.50060 * 179.11510 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2452 -3.6638 -0.0018 11 6 1.4755 -4.9851 0.0597 12 7 0.6556 -5.0192 1.2775 13 6 0.0479 -6.2506 1.4310 14 7 0.1592 -7.2819 0.6213 15 7 -0.5384 -8.2666 1.0632 16 6 -1.1373 -7.9241 2.1804 17 6 -2.0270 -8.7752 2.9962 18 7 -2.6427 -8.2488 4.0487 19 6 -3.4493 -8.9822 4.7955 20 6 -3.6402 -10.3184 4.4755 21 6 -2.9779 -10.8385 3.3731 22 7 -2.1885 -10.0509 2.6640 23 7 -0.7779 -6.6225 2.4488 24 6 -1.1929 -5.8082 3.5938 25 6 -0.1057 -5.0323 4.3400 26 6 -0.7453 -6.2640 4.9840 27 6 -0.3383 -3.9380 1.2789 28 6 0.3773 -2.5855 1.2539 29 1 -0.4850 0.8400 0.0004 30 1 0.6214 -2.5573 -0.8884 31 1 2.9006 -3.5837 0.8655 32 1 2.8416 -3.6322 -0.9136 33 1 2.1807 -5.8160 0.0734 34 1 0.8306 -5.0707 -0.8149 35 1 -3.9509 -8.5474 5.6475 36 1 -4.2911 -10.9407 5.0719 37 1 -3.1060 -11.8749 3.0976 38 1 -2.1750 -5.3432 3.5086 39 1 0.9184 -5.1280 3.9792 40 1 -0.3724 -4.0564 4.7457 41 1 -1.4327 -6.0985 5.8135 42 1 -0.1417 -7.1695 5.0468 43 1 -0.9747 -4.0286 0.3987 44 1 -0.9502 -4.0085 2.1781 45 1 1.0034 -2.4885 2.1409 46 1 -0.3607 -1.7835 1.2391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563313055.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:43 Heat of formation + Delta-G solvation = 158.782301 kcal Electronic energy + Delta-G solvation = -29816.215608 eV Core-core repulsion = 25936.199994 eV Total energy + Delta-G solvation = -3880.015614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.171 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -44.15942 -41.84127 -40.05797 -38.57875 -35.98691 -34.82390 -34.17626 -33.79240 -32.84423 -31.75656 -30.29054 -27.76414 -26.16553 -25.58200 -24.84179 -24.37489 -23.81933 -23.33196 -22.02459 -21.60851 -20.51927 -19.08221 -18.50271 -18.38191 -17.97064 -17.56554 -17.22759 -16.50586 -16.46284 -16.02359 -15.90963 -15.64229 -15.16347 -15.08415 -14.73422 -14.46263 -14.40819 -14.22528 -14.12803 -13.25591 -13.05692 -12.82459 -12.76910 -12.54625 -12.39206 -12.37954 -12.25375 -12.11182 -11.99908 -11.96326 -11.86653 -11.62710 -11.42873 -11.23755 -11.05157 -10.86289 -10.70968 -10.42133 -10.38746 -10.25103 -9.26352 -8.06816 -6.18858 -0.60729 0.16895 0.74895 0.92035 1.43949 1.45977 1.55139 1.58337 2.30261 2.46132 2.48770 2.62960 2.82794 3.08707 3.21316 3.54026 3.61969 3.73358 3.78377 3.85446 3.90379 4.02412 4.12639 4.20013 4.26343 4.31265 4.41242 4.45707 4.56181 4.60499 4.67236 4.71743 4.73287 4.88662 4.89932 4.96295 4.98132 5.12190 5.13266 5.21719 5.34373 5.39164 5.50954 5.61297 5.70947 5.97407 6.00622 6.10387 6.14281 6.39669 6.90921 6.94558 7.48818 7.49010 8.98412 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.023730 B = 0.002736 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.663031 B =10229.858523 C =10883.515840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.016 3.984 3 Si 0.951 3.049 4 H -0.281 1.281 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.041 3.959 10 C -0.096 4.096 11 C 0.083 3.917 12 N -0.436 5.436 13 C 0.383 3.617 14 N -0.357 5.357 15 N -0.263 5.263 16 C 0.211 3.789 17 C 0.375 3.625 18 N -0.507 5.507 19 C 0.143 3.857 20 C -0.195 4.195 21 C 0.137 3.863 22 N -0.520 5.520 23 N -0.433 5.433 24 C 0.043 3.957 25 C -0.162 4.162 26 C -0.114 4.114 27 C 0.070 3.930 28 C -0.087 4.087 29 H 0.261 0.739 30 H -0.009 1.009 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.034 0.966 35 H 0.216 0.784 36 H 0.199 0.801 37 H 0.205 0.795 38 H 0.145 0.855 39 H 0.088 0.912 40 H 0.133 0.867 41 H 0.142 0.858 42 H 0.077 0.923 43 H 0.019 0.981 44 H 0.091 0.909 45 H 0.049 0.951 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.301 -18.224 16.964 26.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.183 4.183 3 Si 0.777 3.223 4 H -0.207 1.207 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.566 4.566 8 H 0.072 0.928 9 C 0.022 3.978 10 C -0.134 4.134 11 C -0.044 4.044 12 N -0.160 5.160 13 C 0.027 3.973 14 N -0.205 5.205 15 N -0.106 5.106 16 C -0.056 4.056 17 C 0.107 3.893 18 N -0.223 5.223 19 C -0.022 4.022 20 C -0.217 4.217 21 C -0.028 4.028 22 N -0.235 5.235 23 N -0.127 5.127 24 C -0.059 4.059 25 C -0.199 4.199 26 C -0.152 4.152 27 C -0.056 4.056 28 C -0.125 4.125 29 H 0.070 0.930 30 H 0.009 0.991 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.053 0.947 35 H 0.232 0.768 36 H 0.216 0.784 37 H 0.222 0.778 38 H 0.162 0.838 39 H 0.107 0.893 40 H 0.151 0.849 41 H 0.160 0.840 42 H 0.096 0.904 43 H 0.038 0.962 44 H 0.109 0.891 45 H 0.068 0.932 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.088 -18.225 15.649 25.683 hybrid contribution -0.825 1.121 0.180 1.404 sum -9.913 -17.104 15.830 25.326 Atomic orbital electron populations 1.69981 1.07020 1.27101 1.51519 1.25669 0.95624 1.02100 0.94863 0.85667 0.78881 0.79776 0.77966 1.20697 1.20905 1.19292 1.21491 0.93094 0.91717 1.50259 0.92764 1.18715 0.93152 0.92602 0.93297 1.21611 0.98060 0.92208 1.01542 1.22041 0.95457 0.99737 0.87129 1.58645 1.20885 0.97028 1.39403 1.22937 0.92193 0.95172 0.87018 1.74787 1.23572 0.98465 1.23711 1.74304 1.07440 1.20957 1.07856 1.21615 1.03391 0.83653 0.96973 1.18828 0.92993 0.87320 0.90122 1.68407 1.08965 1.40033 1.04868 1.24069 0.90202 0.91205 0.96720 1.23555 1.01278 0.98016 0.98813 1.23995 0.88085 1.00880 0.89852 1.68264 1.18678 1.04377 1.32210 1.45579 1.36362 1.10845 1.19947 1.22190 1.00161 1.00345 0.83243 1.23518 0.97097 0.98507 1.00823 1.23163 1.01849 0.97109 0.93067 1.22395 0.92116 0.90519 1.00537 1.21432 0.99527 0.92608 0.98932 0.93031 0.99124 0.91822 0.91522 0.89697 0.94730 0.76779 0.78377 0.77836 0.83755 0.89310 0.84920 0.83987 0.90393 0.96215 0.89123 0.93198 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.15 11.38 21.45 0.24 -50.91 16 2 C 0.02 0.86 5.31 84.65 0.45 1.31 16 3 Si 0.95 42.64 29.54 68.60 2.03 44.67 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.53 -28.22 8.56 25.60 0.22 -28.00 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 9 C 0.04 2.00 2.16 -11.46 -0.02 1.98 16 10 C -0.10 -3.99 5.32 30.65 0.16 -3.82 16 11 C 0.08 3.23 4.87 86.33 0.42 3.65 16 12 N -0.44 -16.39 4.21 -706.43 -2.97 -19.36 16 13 C 0.38 14.56 7.03 260.26 1.83 16.39 16 14 N -0.36 -15.00 11.22 -58.20 -0.65 -15.65 16 15 N -0.26 -10.71 12.19 -50.82 -0.62 -11.33 16 16 C 0.21 7.31 7.91 136.12 1.08 8.38 16 17 C 0.37 10.29 7.58 137.22 1.04 11.33 16 18 N -0.51 -10.00 7.73 -189.45 -1.46 -11.46 16 19 C 0.14 1.40 11.30 84.76 0.96 2.36 16 20 C -0.19 -1.29 10.17 22.50 0.23 -1.06 16 21 C 0.14 1.83 11.30 84.76 0.96 2.78 16 22 N -0.52 -13.19 10.34 -189.45 -1.96 -15.15 16 23 N -0.43 -14.14 3.11 -494.62 -1.54 -15.68 16 24 C 0.04 1.05 3.61 44.99 0.16 1.21 16 25 C -0.16 -3.57 8.90 30.60 0.27 -3.30 16 26 C -0.11 -2.09 9.10 30.60 0.28 -1.81 16 27 C 0.07 2.70 5.07 86.32 0.44 3.14 16 28 C -0.09 -3.87 5.12 30.65 0.16 -3.71 16 29 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 30 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 31 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 32 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.08 3.16 7.91 -2.39 -0.02 3.14 16 34 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.22 0.16 8.06 -2.91 -0.02 0.14 16 36 H 0.20 -0.57 8.06 -2.91 -0.02 -0.59 16 37 H 0.21 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.15 3.18 8.12 -2.39 -0.02 3.16 16 39 H 0.09 2.43 8.01 -2.39 -0.02 2.41 16 40 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.09 3.02 5.10 -2.39 -0.01 3.01 16 45 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.08 3.79 6.18 -2.39 -0.01 3.77 16 Total: -1.00 -74.34 373.17 2.69 -71.66 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 1.00 Total: 12.40 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 8.63 Total: 10.83 kcal Atomic # 7 Polarization: -130.59 SS G_CDS: -8.96 Total: -139.55 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -74.34 2.69 -71.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563313055.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.439 kcal (2) G-P(sol) polarization free energy of solvation -74.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds