Wall clock time and date at job start Sat Apr 11 2020 06:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00119 * 2 1 4 4 C 1.50707 * 109.47188 * 293.94954 * 3 2 1 5 5 H 1.07997 * 119.99743 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00079 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00132 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99630 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47214 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47009 * 120.00399 * 8 6 4 11 11 H 1.48505 * 109.46738 * 240.00047 * 8 6 4 12 12 C 1.46897 * 111.00198 * 123.95127 * 2 1 3 13 13 C 1.53009 * 109.46903 * 66.04401 * 12 2 1 14 14 H 1.08997 * 109.47033 * 304.99989 * 13 12 2 15 15 O 1.42896 * 109.46914 * 65.00596 * 13 12 2 16 16 C 1.53001 * 109.47202 * 185.00341 * 13 12 2 17 17 N 1.46896 * 109.47321 * 180.02562 * 16 13 12 18 18 C 1.46901 * 111.00128 * 180.02562 * 17 16 13 19 19 C 1.52999 * 109.47009 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.46931 * 179.97438 * 19 18 17 21 21 C 1.33921 * 125.84225 * 125.00240 * 20 19 18 22 22 N 1.39527 * 107.27307 * 179.97438 * 21 20 19 23 23 C 1.34883 * 106.07968 * 359.97438 * 22 21 20 24 24 N 1.31924 * 109.25036 * 0.02562 * 23 22 21 25 25 S 1.76902 * 110.04885 * 179.78830 * 23 22 21 26 26 C 1.81819 * 96.10988 * 0.31924 * 25 23 22 27 27 C 1.45964 * 136.74899 * 180.02562 * 22 21 20 28 28 H 1.08999 * 109.47126 * 296.05270 * 1 2 3 29 29 H 1.09005 * 109.46501 * 56.04619 * 1 2 3 30 30 H 1.08999 * 109.47020 * 176.04607 * 1 2 3 31 31 H 1.08993 * 109.47648 * 53.95080 * 3 2 1 32 32 H 1.09000 * 109.47300 * 173.95859 * 3 2 1 33 33 H 0.97000 * 120.00040 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46959 * 306.04760 * 12 2 1 35 35 H 1.08992 * 109.47875 * 186.04562 * 12 2 1 36 36 H 0.96697 * 114.00312 * 59.99442 * 15 13 12 37 37 H 1.08997 * 109.47110 * 59.99783 * 16 13 12 38 38 H 1.09006 * 109.46859 * 300.00359 * 16 13 12 39 39 H 1.00898 * 110.99394 * 303.95416 * 17 16 13 40 40 H 1.09000 * 109.47109 * 59.99817 * 18 17 16 41 41 H 1.09002 * 109.46964 * 299.99663 * 18 17 16 42 42 H 1.09000 * 109.47290 * 59.99982 * 19 18 17 43 43 H 1.09002 * 109.47027 * 299.99679 * 19 18 17 44 44 H 1.08006 * 126.36714 * 359.97372 * 21 20 19 45 45 H 1.08995 * 110.29903 * 241.11834 * 26 25 23 46 46 H 1.09001 * 110.78490 * 118.52631 * 26 25 23 47 47 H 1.09003 * 108.89182 * 300.75420 * 27 22 21 48 48 H 1.09002 * 108.89506 * 59.17817 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 -1.2985 5 1 1.0741 1.5115 -2.0485 6 6 2.0269 3.3495 -1.5286 7 7 2.7120 4.0019 -0.6151 8 14 1.5820 4.1871 -3.1379 9 1 0.8139 3.2448 -3.9906 10 1 0.7545 5.3881 -2.8585 11 1 2.8235 4.5946 -3.8435 12 6 1.9955 -0.7659 1.1376 13 6 1.6314 -2.2426 0.9704 14 1 0.5532 -2.3388 0.8434 15 8 2.2956 -2.7696 -0.1799 16 6 2.0699 -3.0199 2.2132 17 7 1.7209 -4.4377 2.0524 18 6 2.1273 -5.2167 3.2297 19 6 1.7476 -6.6847 3.0258 20 6 2.1651 -7.4839 4.2333 21 6 1.3657 -8.2641 4.9720 22 7 2.1484 -8.8169 5.9862 23 6 3.3943 -8.3344 5.8017 24 7 3.4005 -7.5364 4.7512 25 16 4.4809 -8.9692 7.0449 26 6 3.2294 -9.9717 7.9021 27 6 1.9451 -9.7254 7.1105 28 1 -0.3633 0.4513 0.9232 29 1 -0.3632 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 1.5612 1.9274 0.8308 32 1 3.0798 1.3444 0.1082 33 1 2.9866 4.9180 -0.7771 34 1 1.5611 -0.3871 2.0628 35 1 3.0797 -0.6611 1.1757 36 1 3.2601 -2.7167 -0.1359 37 1 1.5633 -2.6179 3.0906 38 1 3.1482 -2.9236 2.3403 39 1 0.7351 -4.5487 1.8684 40 1 1.6205 -4.8301 4.1139 41 1 3.2059 -5.1354 3.3645 42 1 2.2541 -7.0716 2.1416 43 1 0.6689 -6.7657 2.8913 44 1 0.3110 -8.4338 4.8125 45 1 3.1140 -9.6331 8.9317 46 1 3.4963 -11.0283 7.8765 47 1 1.1958 -9.2992 7.7776 48 1 1.5755 -10.6783 6.7319 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566130831.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:09 Heat of formation + Delta-G solvation = 30.799760 kcal Electronic energy + Delta-G solvation = -25919.237447 eV Core-core repulsion = 22136.823293 eV Total energy + Delta-G solvation = -3782.414153 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 3.70 seconds Orbital eigenvalues (eV) -42.50804 -38.24021 -36.77580 -35.89625 -34.98942 -32.48239 -32.16238 -30.91632 -29.70419 -28.01818 -26.95786 -25.63704 -25.10578 -23.65446 -22.53798 -21.52035 -21.28712 -20.33978 -20.06905 -18.34986 -17.17450 -16.53219 -16.36495 -16.10275 -15.62421 -15.33527 -15.14354 -14.86961 -14.75303 -14.54644 -14.28868 -14.20744 -13.72367 -13.61447 -13.46966 -13.25397 -13.07659 -12.72023 -12.52715 -12.09403 -11.89795 -11.72031 -11.36918 -11.29474 -11.24745 -11.01551 -10.83828 -10.69043 -10.60881 -10.34846 -10.20969 -10.06551 -9.91942 -9.76207 -9.46756 -9.02227 -8.40694 -8.39238 -7.99785 -7.13035 -5.98104 -3.98808 0.42423 1.28549 1.31894 2.00341 2.55898 3.29015 3.35064 3.42221 3.48184 3.74821 3.96231 4.17456 4.35476 4.47554 4.53574 4.54249 4.70589 4.80142 4.88003 4.96934 5.13831 5.21474 5.28086 5.37165 5.41876 5.46288 5.52935 5.66000 5.72267 5.80520 5.89207 5.95355 6.12417 6.21504 6.25654 6.32977 6.36033 6.49601 6.81072 6.95048 7.33270 7.34906 7.38305 7.46186 7.86118 8.11911 8.22663 8.28795 8.61318 9.09677 9.65319 11.12961 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.035012 B = 0.001396 C = 0.001372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.525120 B =20050.555569 C =20403.693149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.284 1.284 12 C 0.025 3.975 13 C 0.117 3.883 14 H 0.092 0.908 15 O -0.536 6.536 16 C 0.027 3.973 17 N -0.678 5.678 18 C 0.068 3.932 19 C -0.031 4.031 20 C 0.035 3.965 21 C -0.032 4.032 22 N -0.489 5.489 23 C 0.190 3.810 24 N -0.446 5.446 25 S 0.000 6.000 26 C -0.122 4.122 27 C 0.097 3.903 28 H 0.007 0.993 29 H 0.074 0.926 30 H 0.046 0.954 31 H -0.011 1.011 32 H 0.029 0.971 33 H 0.260 0.740 34 H 0.026 0.974 35 H 0.071 0.929 36 H 0.369 0.631 37 H 0.034 0.966 38 H 0.075 0.925 39 H 0.338 0.662 40 H 0.024 0.976 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.178 0.822 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.101 0.899 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.035 -32.399 20.792 38.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.083 0.917 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.105 4.105 13 C 0.057 3.943 14 H 0.109 0.891 15 O -0.340 6.340 16 C -0.103 4.103 17 N -0.309 5.309 18 C -0.062 4.062 19 C -0.070 4.070 20 C -0.096 4.096 21 C -0.164 4.164 22 N -0.179 5.179 23 C -0.180 4.180 24 N -0.168 5.168 25 S 0.229 5.771 26 C -0.271 4.271 27 C -0.026 4.026 28 H 0.025 0.975 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.006 0.994 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.215 0.785 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.156 0.844 40 H 0.042 0.958 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.195 0.805 45 H 0.142 0.858 46 H 0.142 0.858 47 H 0.119 0.881 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.095 -32.244 19.882 37.897 hybrid contribution -2.582 0.824 1.085 2.919 sum -3.677 -31.420 20.968 37.952 Atomic orbital electron populations 1.22255 0.89141 0.99505 1.00322 1.62018 1.06701 1.17364 1.39216 1.19754 0.95336 0.81668 0.96590 1.21224 1.34516 0.96808 1.01692 0.91716 1.24998 0.95363 0.97370 0.97009 1.69973 1.38645 1.11373 1.34069 0.86435 0.78145 0.79236 0.83581 1.19597 1.21209 1.21017 1.22735 1.00595 0.93979 0.93218 1.21868 0.97463 0.90588 0.84412 0.89068 1.86574 1.22967 1.83906 1.40520 1.22713 1.01681 0.88027 0.97850 1.60346 1.23342 1.08788 1.38405 1.21851 1.01784 0.91833 0.90719 1.19861 1.00804 0.93171 0.93133 1.20575 0.88820 1.00797 0.99382 1.22581 0.98233 1.03530 0.92032 1.46898 1.09750 1.37250 1.23994 1.25630 0.87884 1.02489 1.02037 1.70427 1.22359 1.17454 1.06577 1.86352 1.09523 1.55114 1.26086 1.24382 0.94338 1.05249 1.03175 1.21525 0.98589 0.94987 0.87543 0.97454 0.90693 0.93506 0.99356 0.95314 0.93056 0.95625 0.91096 0.78495 0.94819 0.90611 0.84401 0.95824 0.90164 0.89208 0.90521 0.80495 0.85786 0.85756 0.88104 0.88101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.14 60.07 0.55 1.29 16 2 N -0.53 -11.83 4.70 -244.37 -1.15 -12.98 16 3 C 0.19 5.15 4.72 -4.97 -0.02 5.12 16 4 C -0.50 -14.57 8.46 -34.44 -0.29 -14.87 16 5 H 0.06 1.87 7.12 -52.49 -0.37 1.50 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -27.30 13.29 55.43 0.74 -26.57 16 8 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.02 0.44 4.60 -3.82 -0.02 0.43 16 13 C 0.12 1.77 3.13 -26.73 -0.08 1.68 16 14 H 0.09 1.40 6.34 -51.93 -0.33 1.07 16 15 O -0.54 -8.94 13.15 -35.23 -0.46 -9.41 16 16 C 0.03 0.34 5.35 -3.83 -0.02 0.32 16 17 N -0.68 -7.86 6.37 -113.78 -0.72 -8.59 16 18 C 0.07 0.73 5.65 -3.82 -0.02 0.71 16 19 C -0.03 -0.29 6.03 -27.88 -0.17 -0.46 16 20 C 0.04 0.37 6.32 -83.14 -0.53 -0.16 16 21 C -0.03 -0.26 11.88 -15.56 -0.18 -0.45 16 22 N -0.49 -3.77 3.39 -116.92 -0.40 -4.17 16 23 C 0.19 1.99 8.90 -89.32 -0.79 1.19 16 24 N -0.45 -5.72 11.30 -9.81 -0.11 -5.84 16 25 S 0.00 0.00 23.24 -107.50 -2.50 -2.50 16 26 C -0.12 -0.23 7.37 37.09 0.27 0.05 16 27 C 0.10 0.28 7.44 -4.40 -0.03 0.25 16 28 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 1.63 6.76 -51.93 -0.35 1.28 16 30 H 0.05 0.82 6.37 -51.93 -0.33 0.49 16 31 H -0.01 -0.32 8.12 -51.93 -0.42 -0.75 16 32 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.03 0.46 8.12 -51.93 -0.42 0.03 16 35 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 36 H 0.37 5.26 9.05 45.56 0.41 5.67 16 37 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.34 3.56 8.73 -39.29 -0.34 3.22 16 40 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 44 H 0.18 0.86 8.06 -52.48 -0.42 0.44 16 45 H 0.12 -0.01 8.14 -51.93 -0.42 -0.43 16 46 H 0.12 -0.03 8.14 -51.93 -0.42 -0.45 16 47 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 48 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 LS Contribution 403.10 15.07 6.07 6.07 Total: -1.00 -36.22 403.10 -12.18 -48.40 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -7.19 Total: 1.87 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -1.44 Total: -3.42 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -1.64 Total: -58.13 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.46 Total: -9.41 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.50 Total: -2.50 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.22 -12.18 -48.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566130831.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.204 kcal (2) G-P(sol) polarization free energy of solvation -36.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.70 seconds