Wall clock time and date at job start Sat Apr 11 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00119 * 2 1 4 4 C 1.50707 * 109.47188 * 293.94954 * 3 2 1 5 5 H 1.07997 * 119.99743 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00079 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00132 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99630 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47214 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47009 * 120.00399 * 8 6 4 11 11 H 1.48505 * 109.46738 * 240.00047 * 8 6 4 12 12 C 1.46897 * 111.00198 * 123.95127 * 2 1 3 13 13 C 1.53009 * 109.46903 * 66.04401 * 12 2 1 14 14 H 1.08997 * 109.47033 * 304.99989 * 13 12 2 15 15 O 1.42896 * 109.46914 * 65.00596 * 13 12 2 16 16 C 1.53001 * 109.47202 * 185.00341 * 13 12 2 17 17 N 1.46896 * 109.47321 * 180.02562 * 16 13 12 18 18 C 1.46901 * 111.00128 * 180.02562 * 17 16 13 19 19 C 1.52999 * 109.47009 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.46931 * 179.97438 * 19 18 17 21 21 C 1.33921 * 125.84225 * 125.00240 * 20 19 18 22 22 N 1.39527 * 107.27307 * 179.97438 * 21 20 19 23 23 C 1.34883 * 106.07968 * 359.97438 * 22 21 20 24 24 N 1.31924 * 109.25036 * 0.02562 * 23 22 21 25 25 S 1.76902 * 110.04885 * 179.78830 * 23 22 21 26 26 C 1.81819 * 96.10988 * 0.31924 * 25 23 22 27 27 C 1.45964 * 136.74899 * 180.02562 * 22 21 20 28 28 H 1.08999 * 109.47126 * 296.05270 * 1 2 3 29 29 H 1.09005 * 109.46501 * 56.04619 * 1 2 3 30 30 H 1.08999 * 109.47020 * 176.04607 * 1 2 3 31 31 H 1.08993 * 109.47648 * 53.95080 * 3 2 1 32 32 H 1.09000 * 109.47300 * 173.95859 * 3 2 1 33 33 H 0.97000 * 120.00040 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46959 * 306.04760 * 12 2 1 35 35 H 1.08992 * 109.47875 * 186.04562 * 12 2 1 36 36 H 0.96697 * 114.00312 * 59.99442 * 15 13 12 37 37 H 1.08997 * 109.47110 * 59.99783 * 16 13 12 38 38 H 1.09006 * 109.46859 * 300.00359 * 16 13 12 39 39 H 1.00898 * 110.99394 * 303.95416 * 17 16 13 40 40 H 1.09000 * 109.47109 * 59.99817 * 18 17 16 41 41 H 1.09002 * 109.46964 * 299.99663 * 18 17 16 42 42 H 1.09000 * 109.47290 * 59.99982 * 19 18 17 43 43 H 1.09002 * 109.47027 * 299.99679 * 19 18 17 44 44 H 1.08006 * 126.36714 * 359.97372 * 21 20 19 45 45 H 1.08995 * 110.29903 * 241.11834 * 26 25 23 46 46 H 1.09001 * 110.78490 * 118.52631 * 26 25 23 47 47 H 1.09003 * 108.89182 * 300.75420 * 27 22 21 48 48 H 1.09002 * 108.89506 * 59.17817 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 -1.2985 5 1 1.0741 1.5115 -2.0485 6 6 2.0269 3.3495 -1.5286 7 7 2.7120 4.0019 -0.6151 8 14 1.5820 4.1871 -3.1379 9 1 0.8139 3.2448 -3.9906 10 1 0.7545 5.3881 -2.8585 11 1 2.8235 4.5946 -3.8435 12 6 1.9955 -0.7659 1.1376 13 6 1.6314 -2.2426 0.9704 14 1 0.5532 -2.3388 0.8434 15 8 2.2956 -2.7696 -0.1799 16 6 2.0699 -3.0199 2.2132 17 7 1.7209 -4.4377 2.0524 18 6 2.1273 -5.2167 3.2297 19 6 1.7476 -6.6847 3.0258 20 6 2.1651 -7.4839 4.2333 21 6 1.3657 -8.2641 4.9720 22 7 2.1484 -8.8169 5.9862 23 6 3.3943 -8.3344 5.8017 24 7 3.4005 -7.5364 4.7512 25 16 4.4809 -8.9692 7.0449 26 6 3.2294 -9.9717 7.9021 27 6 1.9451 -9.7254 7.1105 28 1 -0.3633 0.4513 0.9232 29 1 -0.3632 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 1.5612 1.9274 0.8308 32 1 3.0798 1.3444 0.1082 33 1 2.9866 4.9180 -0.7771 34 1 1.5611 -0.3871 2.0628 35 1 3.0797 -0.6611 1.1757 36 1 3.2601 -2.7167 -0.1359 37 1 1.5633 -2.6179 3.0906 38 1 3.1482 -2.9236 2.3403 39 1 0.7351 -4.5487 1.8684 40 1 1.6205 -4.8301 4.1139 41 1 3.2059 -5.1354 3.3645 42 1 2.2541 -7.0716 2.1416 43 1 0.6689 -6.7657 2.8913 44 1 0.3110 -8.4338 4.8125 45 1 3.1140 -9.6331 8.9317 46 1 3.4963 -11.0283 7.8765 47 1 1.1958 -9.2992 7.7776 48 1 1.5755 -10.6783 6.7319 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566130831.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:08 Heat of formation + Delta-G solvation = 2.051783 kcal Electronic energy + Delta-G solvation = -25920.484053 eV Core-core repulsion = 22136.823293 eV Total energy + Delta-G solvation = -3783.660759 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.09537 -39.58166 -37.75214 -36.94012 -36.08040 -34.61090 -32.98582 -31.42693 -30.94007 -29.28882 -28.56408 -27.09712 -25.46797 -25.18197 -23.50301 -22.72238 -22.07236 -21.74411 -21.02456 -18.84013 -18.56209 -17.66329 -17.43993 -17.05834 -16.81214 -16.57327 -16.22124 -15.96832 -15.95756 -15.43621 -15.26692 -15.17608 -15.02639 -14.59174 -14.41659 -14.07651 -13.99166 -13.84210 -13.50882 -13.32351 -13.14976 -13.04517 -12.81606 -12.63765 -12.59039 -12.51172 -12.36901 -12.10713 -11.98473 -11.73945 -11.61081 -11.36582 -11.05166 -10.66899 -10.62453 -10.59842 -10.33483 -9.34794 -8.95088 -8.54088 -8.20632 -6.30646 -0.03515 0.72364 0.94944 1.41041 1.42138 1.56234 1.61628 1.85061 2.40783 2.92470 3.06402 3.11903 3.43722 3.62992 3.70523 3.73486 3.94344 4.04677 4.12345 4.20974 4.25660 4.28370 4.35795 4.47790 4.48302 4.50230 4.53484 4.55886 4.66878 4.68722 4.73700 4.77332 4.93576 5.07089 5.11345 5.13154 5.16049 5.18110 5.31866 5.55231 5.65230 5.83362 5.98880 6.05935 6.33131 6.48997 6.64134 6.82602 6.85830 7.04512 7.39218 8.90689 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.035012 B = 0.001396 C = 0.001372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.525120 B =20050.555569 C =20403.693149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.540 5.540 3 C 0.206 3.794 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.971 3.029 9 H -0.264 1.264 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.024 3.976 13 C 0.131 3.869 14 H 0.096 0.904 15 O -0.553 6.553 16 C 0.038 3.962 17 N -0.681 5.681 18 C 0.078 3.922 19 C -0.021 4.021 20 C 0.002 3.998 21 C -0.021 4.021 22 N -0.485 5.485 23 C 0.165 3.835 24 N -0.500 5.500 25 S -0.045 6.045 26 C -0.102 4.102 27 C 0.086 3.914 28 H 0.011 0.989 29 H 0.055 0.945 30 H 0.078 0.922 31 H -0.039 1.039 32 H 0.002 0.998 33 H 0.264 0.736 34 H 0.032 0.968 35 H 0.065 0.935 36 H 0.378 0.622 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.348 0.652 40 H 0.024 0.976 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.103 0.897 44 H 0.213 0.787 45 H 0.149 0.851 46 H 0.151 0.849 47 H 0.123 0.877 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.200 -34.561 21.525 41.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.264 5.264 3 C 0.080 3.920 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.796 3.204 9 H -0.188 1.188 10 H -0.203 1.203 11 H -0.204 1.204 12 C -0.105 4.105 13 C 0.071 3.929 14 H 0.114 0.886 15 O -0.358 6.358 16 C -0.092 4.092 17 N -0.313 5.313 18 C -0.051 4.051 19 C -0.060 4.060 20 C -0.128 4.128 21 C -0.153 4.153 22 N -0.174 5.174 23 C -0.205 4.205 24 N -0.224 5.224 25 S 0.184 5.816 26 C -0.250 4.250 27 C -0.036 4.036 28 H 0.030 0.970 29 H 0.074 0.926 30 H 0.097 0.903 31 H -0.021 1.021 32 H 0.021 0.979 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.225 0.775 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.167 0.833 40 H 0.042 0.958 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.122 0.878 44 H 0.229 0.771 45 H 0.167 0.833 46 H 0.169 0.831 47 H 0.141 0.859 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.266 -34.450 20.645 40.295 hybrid contribution -1.905 1.397 0.970 2.554 sum -5.171 -33.053 21.615 39.830 Atomic orbital electron populations 1.22246 0.87741 1.01200 0.99672 1.61932 1.08073 1.14806 1.41573 1.19410 0.93615 0.83988 0.94998 1.21510 1.34766 0.97484 1.02357 0.91997 1.25932 0.94990 0.98030 1.00787 1.70093 1.39468 1.11882 1.36196 0.85302 0.78090 0.78139 0.78886 1.18778 1.20273 1.20371 1.22836 1.00207 0.95484 0.91985 1.21732 0.97520 0.88512 0.85118 0.88608 1.86536 1.23944 1.83870 1.41420 1.22506 1.01503 0.88491 0.96701 1.60285 1.24123 1.08017 1.38882 1.21697 1.00111 0.92960 0.90333 1.19777 1.02159 0.91628 0.92442 1.20810 0.88883 1.02565 1.00557 1.23063 0.99312 1.01884 0.91072 1.47264 1.08674 1.36969 1.24501 1.25979 0.89621 1.02741 1.02207 1.70301 1.24208 1.19420 1.08424 1.86387 1.12504 1.56453 1.26290 1.24659 0.91458 1.05597 1.03316 1.21965 0.99503 0.95356 0.86780 0.97031 0.92598 0.90324 1.02113 0.97942 0.92692 0.95036 0.91657 0.77483 0.93947 0.91035 0.83330 0.95768 0.92765 0.90673 0.87833 0.77075 0.83315 0.83117 0.85872 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.58 9.14 127.69 1.17 2.75 16 2 N -0.54 -24.33 4.70 -927.04 -4.36 -28.68 16 3 C 0.21 11.44 4.72 85.56 0.40 11.84 16 4 C -0.52 -30.76 8.46 25.60 0.22 -30.54 16 5 H 0.06 3.60 7.12 -2.91 -0.02 3.58 16 6 C 0.00 0.02 5.46 84.66 0.46 0.48 16 7 N -0.94 -57.65 13.29 21.45 0.28 -57.36 16 8 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 9 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 C 0.02 0.87 4.60 86.31 0.40 1.27 16 13 C 0.13 3.83 3.13 30.60 0.10 3.93 16 14 H 0.10 2.73 6.34 -2.39 -0.02 2.71 16 15 O -0.55 -18.00 13.15 -148.98 -1.96 -19.96 16 16 C 0.04 0.93 5.35 86.30 0.46 1.39 16 17 N -0.68 -15.16 6.37 -513.88 -3.27 -18.43 16 18 C 0.08 1.70 5.65 86.30 0.49 2.19 16 19 C -0.02 -0.39 6.03 29.85 0.18 -0.21 16 20 C 0.00 0.05 6.32 41.24 0.26 0.31 16 21 C -0.02 -0.30 11.88 82.48 0.98 0.68 16 22 N -0.49 -6.65 3.39 -523.82 -1.78 -8.42 16 23 C 0.17 3.48 8.90 179.89 1.60 5.08 16 24 N -0.50 -13.42 11.30 -184.94 -2.09 -15.51 16 25 S -0.04 -0.62 23.24 -56.49 -1.31 -1.93 16 26 C -0.10 -0.07 7.37 71.94 0.53 0.46 16 27 C 0.09 0.21 7.44 86.43 0.64 0.86 16 28 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 2.43 6.76 -2.38 -0.02 2.41 16 30 H 0.08 2.62 6.37 -2.39 -0.02 2.61 16 31 H -0.04 -2.31 8.12 -2.39 -0.02 -2.33 16 32 H 0.00 0.15 7.93 -2.39 -0.02 0.13 16 33 H 0.26 15.23 8.31 -92.71 -0.77 14.45 16 34 H 0.03 1.11 8.12 -2.39 -0.02 1.09 16 35 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 36 H 0.38 10.70 9.05 -74.06 -0.67 10.03 16 37 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.35 6.67 8.73 -89.70 -0.78 5.89 16 40 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.10 1.26 8.10 -2.39 -0.02 1.24 16 44 H 0.21 1.32 8.06 -2.91 -0.02 1.29 16 45 H 0.15 -0.58 8.14 -2.39 -0.02 -0.60 16 46 H 0.15 -0.65 8.14 -2.39 -0.02 -0.67 16 47 H 0.12 -0.18 8.14 -2.39 -0.02 -0.20 16 48 H 0.13 -0.23 8.14 -2.39 -0.02 -0.25 16 Total: -1.00 -81.85 403.10 -5.05 -86.90 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -0.48 Total: 15.37 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 7.89 Total: 0.49 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -11.21 Total: -128.41 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -1.96 Total: -19.96 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Atomic # 16 Polarization: -0.62 SS G_CDS: -1.31 Total: -1.93 kcal Total: -81.85 -5.05 -86.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566130831.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.956 kcal (2) G-P(sol) polarization free energy of solvation -81.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds