Wall clock time and date at job start Sat Apr 11 2020 06:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35933 * 116.99918 * 2 1 4 4 C 1.38745 * 119.98877 * 179.97438 * 3 2 1 5 5 C 1.38063 * 120.01264 * 180.02562 * 4 3 2 6 6 C 1.38833 * 119.98933 * 359.97438 * 5 4 3 7 7 N 1.40301 * 120.00924 * 180.02562 * 6 5 4 8 8 C 1.35200 * 126.05093 * 180.33816 * 7 6 5 9 9 C 1.35336 * 107.71610 * 180.16027 * 8 7 6 10 10 C 1.39899 * 107.93031 * 359.57227 * 9 8 7 11 11 C 1.50701 * 125.87930 * 180.26708 * 10 9 8 12 12 N 1.46899 * 109.47288 * 94.99930 * 11 10 9 13 13 C 1.46893 * 111.00123 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47420 * 180.02562 * 13 12 11 15 15 H 1.09003 * 109.47134 * 304.99728 * 14 13 12 16 16 C 1.47196 * 109.47155 * 65.00220 * 14 13 12 17 17 N 9.49745 * 156.29245 * 270.92175 * 3 1 2 18 18 C 1.53004 * 109.47199 * 185.00241 * 14 13 12 19 19 C 1.50697 * 109.46980 * 174.99972 * 18 14 13 20 20 H 1.08005 * 120.00264 * 359.97438 * 19 18 14 21 21 C 1.37878 * 120.00242 * 179.97438 * 19 18 14 22 22 N 1.31517 * 119.99937 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00240 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47101 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47022 * 120.00184 * 23 21 19 26 26 H 1.48507 * 109.46997 * 240.00201 * 23 21 19 27 27 N 1.30901 * 108.23924 * 0.26279 * 10 9 8 28 28 C 1.38827 * 119.97856 * 0.27532 * 6 5 4 29 29 C 1.38071 * 119.98978 * 359.44668 * 28 6 5 30 30 H 1.08994 * 109.46925 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46485 * 299.99744 * 1 2 3 32 32 H 1.08999 * 109.47161 * 59.99037 * 1 2 3 33 33 H 1.08006 * 119.99367 * 0.02562 * 4 3 2 34 34 H 1.08003 * 120.00378 * 180.02562 * 5 4 3 35 35 H 1.08002 * 126.14153 * 0.02562 * 8 7 6 36 36 H 1.08002 * 126.03757 * 179.84120 * 9 8 7 37 37 H 1.08998 * 109.46870 * 215.00389 * 11 10 9 38 38 H 1.09000 * 109.46948 * 334.99596 * 11 10 9 39 39 H 1.00893 * 110.99983 * 303.95396 * 12 11 10 40 40 H 1.08999 * 109.47484 * 300.00514 * 13 12 11 41 41 H 1.09003 * 109.47202 * 59.99891 * 13 12 11 42 42 H 1.08995 * 109.47193 * 294.99893 * 18 14 13 43 43 H 1.08998 * 109.47211 * 55.00205 * 18 14 13 44 44 H 0.96989 * 120.00537 * 179.97438 * 22 21 19 45 45 H 1.08004 * 120.00781 * 179.70437 * 28 6 5 46 46 H 1.07995 * 120.00000 * 180.25574 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 3.4317 1.2835 0.0005 5 6 4.0590 2.5134 0.0011 6 6 3.3031 3.6780 0.0005 7 7 3.9402 4.9280 0.0005 8 6 3.3275 6.1332 0.0065 9 6 4.2901 7.0846 0.0006 10 6 5.5321 6.4406 0.0006 11 6 6.8782 7.1181 0.0007 12 7 7.3699 7.2303 1.3804 13 6 8.6833 7.8869 1.4194 14 6 9.1617 7.9849 2.8694 15 1 8.4047 8.4914 3.4683 16 6 9.3865 6.6321 3.4044 17 7 9.5607 5.5878 3.8181 18 6 10.4689 8.7782 2.9227 19 6 10.8756 8.9802 4.3597 20 1 10.2628 8.5830 5.1554 21 6 12.0300 9.6722 4.6587 22 7 12.7761 10.1565 3.6898 23 14 12.5345 9.9221 6.4398 24 1 11.5326 9.2855 7.3320 25 1 13.8653 9.3042 6.6686 26 1 12.6064 11.3758 6.7347 27 7 5.3235 5.1483 0.0006 28 6 1.9168 3.6051 0.0052 29 6 1.2904 2.3747 -0.0011 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5140 -0.8899 33 1 4.0197 0.3776 0.0005 34 1 5.1376 2.5696 0.0011 35 1 2.2614 6.3058 0.0125 36 1 4.1281 8.1524 0.0006 37 1 7.5812 6.5295 -0.5888 38 1 6.7841 8.1133 -0.4337 39 1 6.7048 7.7166 1.9628 40 1 9.3987 7.3033 0.8399 41 1 8.6022 8.8875 0.9948 42 1 11.2497 8.2276 2.3981 43 1 10.3252 9.7478 2.4461 44 1 13.5880 10.6436 3.9001 45 1 1.3283 4.5107 0.0096 46 1 0.2119 2.3178 -0.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572235721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:26 Heat of formation + Delta-G solvation = 93.552828 kcal Electronic energy + Delta-G solvation = -26849.178077 eV Core-core repulsion = 22934.041150 eV Total energy + Delta-G solvation = -3915.136927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 3.54 seconds Orbital eigenvalues (eV) -41.75690 -40.42563 -38.02327 -37.29217 -35.32222 -33.74650 -33.06948 -31.77552 -31.50892 -30.34711 -29.23856 -27.91893 -26.86339 -25.10155 -23.68680 -22.70682 -22.33779 -21.71051 -21.01385 -19.83403 -18.87324 -18.09106 -17.08933 -16.49179 -16.39134 -16.23936 -15.54458 -15.51073 -14.95325 -14.73366 -14.52807 -14.39375 -14.19248 -14.11147 -13.69846 -13.65453 -13.16917 -13.11524 -13.00358 -12.62406 -12.44041 -12.32966 -11.93294 -11.88898 -11.72373 -11.59852 -11.35841 -11.16942 -11.03890 -10.72594 -10.66637 -10.50562 -10.20857 -10.04265 -9.56877 -9.51346 -9.23469 -9.18720 -8.44505 -8.31190 -8.00236 -6.07840 -4.10622 0.53849 0.79510 1.91586 2.14244 2.52311 2.79225 3.30004 3.32188 3.38331 3.43296 3.80302 3.90058 4.08412 4.24033 4.33440 4.37814 4.44031 4.55105 4.58842 4.64336 4.72049 4.86780 4.95817 4.97913 5.01948 5.18692 5.30499 5.37081 5.42956 5.44476 5.50244 5.55987 5.61816 5.74742 5.78421 5.79014 6.00370 6.03794 6.12427 6.40445 6.42955 6.52074 6.79656 6.97204 7.05970 7.43562 7.45851 7.54516 7.56649 7.87960 8.25512 8.65339 8.94516 9.54837 11.03098 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020567 B = 0.001676 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.092615 B =16705.044359 C =17482.708439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.116 3.884 4 C -0.125 4.125 5 C -0.077 4.077 6 C 0.129 3.871 7 N -0.322 5.322 8 C 0.047 3.953 9 C -0.253 4.253 10 C 0.090 3.910 11 C 0.139 3.861 12 N -0.687 5.687 13 C 0.068 3.932 14 C 0.010 3.990 15 H 0.099 0.901 16 C 0.254 3.746 17 N -0.478 5.478 18 C 0.031 3.969 19 C -0.525 4.525 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.892 5.892 23 Si 0.891 3.109 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.283 1.283 27 N -0.266 5.266 28 C -0.102 4.102 29 C -0.183 4.183 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.141 0.859 34 H 0.147 0.853 35 H 0.174 0.826 36 H 0.153 0.847 37 H 0.088 0.912 38 H 0.056 0.944 39 H 0.344 0.656 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.027 0.973 43 H 0.038 0.962 44 H 0.262 0.738 45 H 0.133 0.867 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.576 -11.148 -13.406 33.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.070 3.930 4 C -0.144 4.144 5 C -0.097 4.097 6 C 0.036 3.964 7 N -0.097 5.097 8 C -0.095 4.095 9 C -0.282 4.282 10 C -0.079 4.079 11 C 0.008 3.992 12 N -0.319 5.319 13 C -0.062 4.062 14 C -0.012 4.012 15 H 0.117 0.883 16 C -0.063 4.063 17 N -0.155 5.155 18 C -0.007 4.007 19 C -0.563 4.563 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.209 1.209 27 N -0.086 5.086 28 C -0.123 4.123 29 C -0.202 4.202 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.192 0.808 36 H 0.171 0.829 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.162 0.838 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.045 0.955 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.151 0.849 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -27.317 -14.666 -12.816 33.549 hybrid contribution -0.710 2.529 0.724 2.724 sum -28.027 -12.137 -12.092 32.849 Atomic orbital electron populations 1.23095 0.78201 1.04201 1.01432 1.86102 1.21517 1.26574 1.88652 1.19055 0.92342 0.84326 0.97278 1.20364 0.91360 0.98318 1.04379 1.20791 1.01206 0.89462 0.98239 1.17450 0.90953 0.82740 1.05210 1.45830 1.04852 1.03620 1.55432 1.22516 0.99774 0.84500 1.02759 1.21513 0.91036 1.00465 1.15166 1.22403 0.96263 0.90725 0.98470 1.20232 0.89447 0.97906 0.91599 1.60424 1.05011 1.57748 1.08741 1.22091 0.89809 0.97666 0.96645 1.19206 1.02786 0.85711 0.93461 0.88307 1.28872 0.91248 0.94048 0.92144 1.81011 1.10868 1.13345 1.10267 1.19175 0.88602 0.94744 0.98223 1.21193 1.08066 1.35140 0.91940 0.92442 1.24951 0.96309 0.95451 0.97275 1.69943 1.14793 1.36824 1.31474 0.86540 0.78637 0.77787 0.85145 1.19695 1.20976 1.20892 1.77517 0.89970 1.17558 1.23538 1.20548 0.91555 0.98461 1.01737 1.21004 1.00247 0.91245 1.07694 0.88061 0.92490 0.92535 0.84097 0.83482 0.80840 0.82887 0.89358 0.92606 0.83796 0.90257 0.92935 0.95486 0.94375 0.92879 0.84933 0.84524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 9.81 101.05 0.99 1.09 16 2 O -0.32 -2.52 10.50 -19.53 -0.20 -2.73 16 3 C 0.12 1.00 6.69 -39.21 -0.26 0.73 16 4 C -0.13 -1.16 9.98 -39.46 -0.39 -1.56 16 5 C -0.08 -0.83 9.66 -39.43 -0.38 -1.21 16 6 C 0.13 1.38 6.69 -83.54 -0.56 0.82 16 7 N -0.32 -3.85 3.80 -10.67 -0.04 -3.90 16 8 C 0.05 0.44 10.80 -17.10 -0.18 0.26 16 9 C -0.25 -2.54 10.74 -39.99 -0.43 -2.96 16 10 C 0.09 1.11 6.73 -82.37 -0.55 0.56 16 11 C 0.14 1.60 6.24 -4.98 -0.03 1.57 16 12 N -0.69 -9.25 6.19 -115.06 -0.71 -9.96 16 13 C 0.07 0.98 5.05 -3.83 -0.02 0.96 16 14 C 0.01 0.19 2.35 -93.41 -0.22 -0.03 16 15 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 16 C 0.25 5.47 13.67 -20.74 -0.28 5.19 16 17 N -0.48 -11.33 18.54 42.18 0.78 -10.54 16 18 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 19 C -0.53 -14.04 8.60 -34.44 -0.30 -14.34 16 20 H 0.06 1.54 7.59 -52.48 -0.40 1.14 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 23 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 N -0.27 -3.80 11.87 33.69 0.40 -3.40 16 28 C -0.10 -0.81 9.45 -39.43 -0.37 -1.18 16 29 C -0.18 -1.30 9.03 -39.46 -0.36 -1.66 16 30 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 32 H 0.06 0.16 7.66 -51.93 -0.40 -0.23 16 33 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.15 1.70 7.69 -52.48 -0.40 1.29 16 35 H 0.17 0.95 7.04 -52.49 -0.37 0.58 16 36 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.34 4.22 8.72 -39.30 -0.34 3.88 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.13 0.71 6.74 -52.48 -0.35 0.36 16 46 H 0.14 0.60 6.29 -52.49 -0.33 0.27 16 LS Contribution 399.36 15.07 6.02 6.02 Total: -1.00 -34.51 399.36 -7.97 -42.48 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.36 Total: -0.06 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -3.57 Total: -9.54 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 1.17 Total: -52.59 kcal Atomic # 8 Polarization: -2.52 SS G_CDS: -0.20 Total: -2.73 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.51 -7.97 -42.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572235721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.034 kcal (2) G-P(sol) polarization free energy of solvation -34.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.54 seconds