Wall clock time and date at job start Sat Apr 11 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00022 * 2 1 4 4 C 1.50695 * 109.47490 * 293.95190 * 3 2 1 5 5 H 1.08001 * 120.00064 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00398 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99705 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00418 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47329 * 89.99702 * 8 6 4 10 10 H 1.48496 * 109.47162 * 210.00429 * 8 6 4 11 11 H 1.48501 * 109.46706 * 330.00037 * 8 6 4 12 12 C 1.46897 * 111.00036 * 123.95670 * 2 1 3 13 13 C 1.53004 * 109.47420 * 66.04370 * 12 2 1 14 14 H 1.08998 * 109.46924 * 305.00385 * 13 12 2 15 15 O 1.42906 * 109.46892 * 64.99840 * 13 12 2 16 16 C 1.52993 * 109.47360 * 185.00010 * 13 12 2 17 17 N 1.46905 * 109.47039 * 180.02562 * 16 13 12 18 18 C 1.46901 * 110.99870 * 180.02562 * 17 16 13 19 19 C 1.53004 * 109.46916 * 180.02562 * 18 17 16 20 20 C 1.52996 * 109.46700 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.46820 * 179.97438 * 20 19 18 22 22 C 1.38243 * 119.99047 * 269.72499 * 21 20 19 23 23 C 1.38210 * 120.01350 * 179.72492 * 22 21 20 24 24 C 1.38350 * 119.98854 * 0.54963 * 23 22 21 25 25 Cl 1.73600 * 120.01702 * 179.70393 * 24 23 22 26 26 C 1.38359 * 119.97072 * 359.72766 * 24 23 22 27 27 C 1.38213 * 119.98748 * 359.97438 * 26 24 23 28 28 H 1.08994 * 109.46860 * 296.04367 * 1 2 3 29 29 H 1.08998 * 109.46744 * 56.04690 * 1 2 3 30 30 H 1.09004 * 109.47044 * 176.04407 * 1 2 3 31 31 H 1.08997 * 109.47453 * 53.95745 * 3 2 1 32 32 H 1.09009 * 109.46916 * 173.95393 * 3 2 1 33 33 H 0.97003 * 120.00087 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47431 * 306.04688 * 12 2 1 35 35 H 1.08997 * 109.47363 * 186.04585 * 12 2 1 36 36 H 0.96709 * 113.99630 * 60.00107 * 15 13 12 37 37 H 1.09001 * 109.47393 * 60.00433 * 16 13 12 38 38 H 1.08998 * 109.47408 * 300.00078 * 16 13 12 39 39 H 1.00901 * 110.99869 * 56.04956 * 17 16 13 40 40 H 1.09004 * 109.47031 * 299.99620 * 18 17 16 41 41 H 1.08995 * 109.47111 * 59.99900 * 18 17 16 42 42 H 1.08995 * 109.46615 * 299.99641 * 19 18 17 43 43 H 1.08996 * 109.46939 * 60.00272 * 19 18 17 44 44 H 1.08993 * 109.47740 * 299.99810 * 20 19 18 45 45 H 1.09005 * 109.47573 * 59.99976 * 20 19 18 46 46 H 1.07998 * 119.98841 * 0.02562 * 22 21 20 47 47 H 1.08001 * 120.00935 * 180.28060 * 23 22 21 48 48 H 1.08001 * 120.00494 * 179.97438 * 26 24 23 49 49 H 1.07999 * 119.99153 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5116 -2.0485 6 6 2.0269 3.3495 -1.5284 7 7 2.7120 4.0019 -0.6148 8 14 1.5820 4.1874 -3.1376 9 1 0.2695 4.8674 -2.9953 10 1 2.6240 5.1888 -3.4789 11 1 1.4987 3.1718 -4.2179 12 6 1.9954 -0.7660 1.1375 13 6 1.6314 -2.2427 0.9703 14 1 0.5532 -2.3389 0.8432 15 8 2.2955 -2.7696 -0.1801 16 6 2.0699 -3.0200 2.2130 17 7 1.7209 -4.4379 2.0521 18 6 2.1274 -5.2169 3.2293 19 6 1.7488 -6.6852 3.0247 20 6 2.1728 -7.4966 4.2506 21 6 1.7993 -8.9427 4.0494 22 6 0.5640 -9.4019 4.4669 23 6 0.2188 -10.7267 4.2774 24 6 1.1142 -11.5960 3.6802 25 17 0.6843 -13.2620 3.4489 26 6 2.3526 -11.1372 3.2678 27 6 2.6943 -9.8107 3.4521 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0253 -0.0709 31 1 1.5612 1.9273 0.8309 32 1 3.0798 1.3443 0.1083 33 1 2.9866 4.9180 -0.7768 34 1 1.5611 -0.3874 2.0628 35 1 3.0797 -0.6612 1.1756 36 1 3.2602 -2.7167 -0.1361 37 1 1.5633 -2.6181 3.0905 38 1 3.1482 -2.9237 2.3401 39 1 2.1268 -4.8168 1.2096 40 1 3.2060 -5.1356 3.3641 41 1 1.6206 -4.8304 4.1135 42 1 0.6704 -6.7668 2.8897 43 1 2.2561 -7.0714 2.1407 44 1 3.2513 -7.4149 4.3852 45 1 1.6660 -7.1105 5.1350 46 1 -0.1332 -8.7241 4.9367 47 1 -0.7480 -11.0843 4.5995 48 1 3.0521 -11.8154 2.8019 49 1 3.6611 -9.4526 3.1306 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574445375.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:35 Heat of formation + Delta-G solvation = -45.025113 kcal Electronic energy + Delta-G solvation = -25495.272424 eV Core-core repulsion = 21675.233800 eV Total energy + Delta-G solvation = -3820.038624 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.166 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.94544 -38.42205 -37.10619 -36.48134 -35.40792 -33.86340 -32.51860 -31.54730 -30.85239 -29.20345 -27.13943 -26.39419 -24.96212 -23.33272 -23.24439 -22.10871 -21.46997 -21.00430 -20.15665 -17.57903 -16.77213 -16.44973 -16.15632 -15.97092 -15.81546 -15.20650 -14.99916 -14.77860 -14.49992 -14.21553 -14.04019 -13.94874 -13.86123 -13.72263 -13.31738 -12.90251 -12.64427 -12.49422 -12.22656 -12.00322 -11.90934 -11.81347 -11.58443 -11.35101 -11.28806 -11.26741 -11.10046 -11.01714 -10.86637 -10.74153 -10.68838 -10.27288 -10.01417 -9.61620 -9.52556 -9.11848 -8.99582 -8.56483 -8.43164 -7.18656 -6.02159 -4.03046 0.65338 0.80959 1.68947 3.12066 3.32840 3.38832 3.44166 3.86177 4.24964 4.29496 4.41320 4.44105 4.60335 4.67445 4.83393 4.84765 4.90266 4.93967 5.00544 5.16154 5.19129 5.23324 5.31298 5.36546 5.38706 5.43158 5.46383 5.52662 5.66427 5.73376 5.75132 5.75513 5.78650 5.92228 6.06577 6.10893 6.21268 6.32242 6.33999 6.42331 6.79342 6.84429 7.26067 7.27942 7.33479 7.81142 7.95271 8.10687 8.21467 8.56412 9.05101 9.61219 11.08847 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.033581 B = 0.001258 C = 0.001243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.604807 B =22258.194905 C =22523.978562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.530 5.530 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.025 3.975 13 C 0.113 3.887 14 H 0.104 0.896 15 O -0.546 6.546 16 C 0.028 3.972 17 N -0.686 5.686 18 C 0.058 3.942 19 C -0.111 4.111 20 C -0.082 4.082 21 C -0.072 4.072 22 C -0.104 4.104 23 C -0.108 4.108 24 C -0.041 4.041 25 Cl -0.075 7.075 26 C -0.108 4.108 27 C -0.105 4.105 28 H 0.008 0.992 29 H 0.074 0.926 30 H 0.048 0.952 31 H -0.011 1.011 32 H 0.028 0.972 33 H 0.261 0.739 34 H 0.028 0.972 35 H 0.068 0.932 36 H 0.366 0.634 37 H 0.078 0.922 38 H 0.031 0.969 39 H 0.348 0.652 40 H 0.027 0.973 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.133 0.867 47 H 0.133 0.867 48 H 0.132 0.868 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.645 -31.023 13.686 33.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.254 5.254 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.105 4.105 13 C 0.054 3.946 14 H 0.122 0.878 15 O -0.350 6.350 16 C -0.102 4.102 17 N -0.318 5.318 18 C -0.071 4.071 19 C -0.149 4.149 20 C -0.119 4.119 21 C -0.073 4.073 22 C -0.122 4.122 23 C -0.127 4.127 24 C -0.067 4.067 25 Cl -0.046 7.046 26 C -0.127 4.127 27 C -0.123 4.123 28 H 0.027 0.973 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.007 0.993 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.087 0.913 36 H 0.212 0.788 37 H 0.096 0.904 38 H 0.049 0.951 39 H 0.167 0.833 40 H 0.046 0.954 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.150 0.850 47 H 0.151 0.849 48 H 0.150 0.850 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.700 -31.235 13.285 33.985 hybrid contribution 1.060 0.945 0.128 1.426 sum -0.640 -30.290 13.414 33.133 Atomic orbital electron populations 1.22261 0.88957 0.99661 1.00396 1.62027 1.06870 1.17387 1.39104 1.19742 0.95233 0.81664 0.96627 1.21178 1.34640 0.96850 1.01711 0.91777 1.24993 0.95306 0.97346 0.97027 1.69963 1.38537 1.11414 1.34156 0.86490 0.77958 0.79199 0.83747 1.20756 1.21280 1.19711 1.22711 1.00351 0.93906 0.93486 1.22006 0.98296 0.90711 0.83637 0.87834 1.86616 1.22763 1.83826 1.41760 1.22678 0.98471 0.89022 1.00035 1.60345 1.64347 1.02058 1.05058 1.21975 0.97736 0.93111 0.94303 1.21540 1.02641 0.93565 0.97189 1.20616 1.01980 0.90237 0.99108 1.20028 0.94022 0.96057 0.97152 1.21063 0.96396 0.94886 0.99885 1.21073 0.99384 0.93164 0.99046 1.20952 0.96187 0.85905 1.03704 1.98377 1.93244 1.17157 1.95800 1.21070 0.95133 0.96365 1.00128 1.21051 0.99943 0.92407 0.98944 0.97317 0.90700 0.93358 0.99316 0.95428 0.92979 0.95349 0.91348 0.78819 0.90406 0.95069 0.83307 0.95440 0.91100 0.90716 0.91767 0.90719 0.90512 0.84960 0.84948 0.84969 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.14 60.06 0.55 1.26 16 2 N -0.53 -11.52 4.70 -244.38 -1.15 -12.66 16 3 C 0.19 5.06 4.72 -4.98 -0.02 5.03 16 4 C -0.51 -14.37 8.46 -34.44 -0.29 -14.67 16 5 H 0.06 1.82 7.12 -52.49 -0.37 1.45 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 8 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.03 0.44 4.60 -3.82 -0.02 0.42 16 13 C 0.11 1.61 3.19 -26.73 -0.09 1.52 16 14 H 0.10 1.61 6.34 -51.93 -0.33 1.28 16 15 O -0.55 -8.14 12.62 -35.23 -0.44 -8.58 16 16 C 0.03 0.31 5.39 -3.82 -0.02 0.29 16 17 N -0.69 -7.04 6.50 -113.78 -0.74 -7.78 16 18 C 0.06 0.46 5.69 -3.82 -0.02 0.44 16 19 C -0.11 -0.75 5.46 -26.73 -0.15 -0.90 16 20 C -0.08 -0.45 5.35 -27.88 -0.15 -0.59 16 21 C -0.07 -0.46 5.13 -104.62 -0.54 -1.00 16 22 C -0.10 -0.66 9.70 -39.59 -0.38 -1.04 16 23 C -0.11 -0.72 9.83 -39.55 -0.39 -1.11 16 24 C -0.04 -0.30 6.32 -39.50 -0.25 -0.55 16 25 Cl -0.07 -0.54 28.96 -51.86 -1.50 -2.04 16 26 C -0.11 -0.72 9.83 -39.55 -0.39 -1.11 16 27 C -0.11 -0.66 9.70 -39.59 -0.38 -1.04 16 28 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 30 H 0.05 0.85 6.37 -51.93 -0.33 0.52 16 31 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 32 H 0.03 0.77 7.93 -51.92 -0.41 0.36 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 35 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 36 H 0.37 4.35 9.05 45.56 0.41 4.77 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.35 3.59 8.12 -39.29 -0.32 3.27 16 40 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 45 H 0.08 0.38 8.08 -51.93 -0.42 -0.04 16 46 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 47 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 48 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 49 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 414.45 15.07 6.25 6.25 Total: -1.00 -31.60 414.45 -12.09 -43.70 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.58 Total: 2.08 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -2.64 Total: -11.59 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -1.15 Total: -46.60 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.44 Total: -8.58 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.60 -12.09 -43.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574445375.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.328 kcal (2) G-P(sol) polarization free energy of solvation -31.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds