Wall clock time and date at job start Sat Apr 11 2020 06:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00022 * 2 1 4 4 C 1.50695 * 109.47490 * 293.95190 * 3 2 1 5 5 H 1.08001 * 120.00064 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00398 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99705 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00418 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47329 * 89.99702 * 8 6 4 10 10 H 1.48496 * 109.47162 * 210.00429 * 8 6 4 11 11 H 1.48501 * 109.46706 * 330.00037 * 8 6 4 12 12 C 1.46897 * 111.00036 * 123.95670 * 2 1 3 13 13 C 1.53004 * 109.47420 * 66.04370 * 12 2 1 14 14 H 1.08998 * 109.46924 * 305.00385 * 13 12 2 15 15 O 1.42906 * 109.46892 * 64.99840 * 13 12 2 16 16 C 1.52993 * 109.47360 * 185.00010 * 13 12 2 17 17 N 1.46905 * 109.47039 * 180.02562 * 16 13 12 18 18 C 1.46901 * 110.99870 * 180.02562 * 17 16 13 19 19 C 1.53004 * 109.46916 * 180.02562 * 18 17 16 20 20 C 1.52996 * 109.46700 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.46820 * 179.97438 * 20 19 18 22 22 C 1.38243 * 119.99047 * 269.72499 * 21 20 19 23 23 C 1.38210 * 120.01350 * 179.72492 * 22 21 20 24 24 C 1.38350 * 119.98854 * 0.54963 * 23 22 21 25 25 Cl 1.73600 * 120.01702 * 179.70393 * 24 23 22 26 26 C 1.38359 * 119.97072 * 359.72766 * 24 23 22 27 27 C 1.38213 * 119.98748 * 359.97438 * 26 24 23 28 28 H 1.08994 * 109.46860 * 296.04367 * 1 2 3 29 29 H 1.08998 * 109.46744 * 56.04690 * 1 2 3 30 30 H 1.09004 * 109.47044 * 176.04407 * 1 2 3 31 31 H 1.08997 * 109.47453 * 53.95745 * 3 2 1 32 32 H 1.09009 * 109.46916 * 173.95393 * 3 2 1 33 33 H 0.97003 * 120.00087 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47431 * 306.04688 * 12 2 1 35 35 H 1.08997 * 109.47363 * 186.04585 * 12 2 1 36 36 H 0.96709 * 113.99630 * 60.00107 * 15 13 12 37 37 H 1.09001 * 109.47393 * 60.00433 * 16 13 12 38 38 H 1.08998 * 109.47408 * 300.00078 * 16 13 12 39 39 H 1.00901 * 110.99869 * 56.04956 * 17 16 13 40 40 H 1.09004 * 109.47031 * 299.99620 * 18 17 16 41 41 H 1.08995 * 109.47111 * 59.99900 * 18 17 16 42 42 H 1.08995 * 109.46615 * 299.99641 * 19 18 17 43 43 H 1.08996 * 109.46939 * 60.00272 * 19 18 17 44 44 H 1.08993 * 109.47740 * 299.99810 * 20 19 18 45 45 H 1.09005 * 109.47573 * 59.99976 * 20 19 18 46 46 H 1.07998 * 119.98841 * 0.02562 * 22 21 20 47 47 H 1.08001 * 120.00935 * 180.28060 * 23 22 21 48 48 H 1.08001 * 120.00494 * 179.97438 * 26 24 23 49 49 H 1.07999 * 119.99153 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5116 -2.0485 6 6 2.0269 3.3495 -1.5284 7 7 2.7120 4.0019 -0.6148 8 14 1.5820 4.1874 -3.1376 9 1 0.2695 4.8674 -2.9953 10 1 2.6240 5.1888 -3.4789 11 1 1.4987 3.1718 -4.2179 12 6 1.9954 -0.7660 1.1375 13 6 1.6314 -2.2427 0.9703 14 1 0.5532 -2.3389 0.8432 15 8 2.2955 -2.7696 -0.1801 16 6 2.0699 -3.0200 2.2130 17 7 1.7209 -4.4379 2.0521 18 6 2.1274 -5.2169 3.2293 19 6 1.7488 -6.6852 3.0247 20 6 2.1728 -7.4966 4.2506 21 6 1.7993 -8.9427 4.0494 22 6 0.5640 -9.4019 4.4669 23 6 0.2188 -10.7267 4.2774 24 6 1.1142 -11.5960 3.6802 25 17 0.6843 -13.2620 3.4489 26 6 2.3526 -11.1372 3.2678 27 6 2.6943 -9.8107 3.4521 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0253 -0.0709 31 1 1.5612 1.9273 0.8309 32 1 3.0798 1.3443 0.1083 33 1 2.9866 4.9180 -0.7768 34 1 1.5611 -0.3874 2.0628 35 1 3.0797 -0.6612 1.1756 36 1 3.2602 -2.7167 -0.1361 37 1 1.5633 -2.6181 3.0905 38 1 3.1482 -2.9237 2.3401 39 1 2.1268 -4.8168 1.2096 40 1 3.2060 -5.1356 3.3641 41 1 1.6206 -4.8304 4.1135 42 1 0.6704 -6.7668 2.8897 43 1 2.2561 -7.0714 2.1407 44 1 3.2513 -7.4149 4.3852 45 1 1.6660 -7.1105 5.1350 46 1 -0.1332 -8.7241 4.9367 47 1 -0.7480 -11.0843 4.5995 48 1 3.0521 -11.8154 2.8019 49 1 3.6611 -9.4526 3.1306 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574445375.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:32 Heat of formation + Delta-G solvation = -66.335694 kcal Electronic energy + Delta-G solvation = -25496.196520 eV Core-core repulsion = 21675.233800 eV Total energy + Delta-G solvation = -3820.962720 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.166 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -40.40930 -39.62865 -37.81748 -37.44730 -36.59951 -34.62006 -34.52887 -32.00317 -31.72527 -30.31692 -28.96021 -27.58649 -26.16108 -24.58339 -23.79101 -22.74541 -22.62905 -21.78882 -21.62388 -18.56871 -18.05373 -17.58147 -17.22162 -16.81753 -16.65684 -16.46770 -16.11763 -15.89694 -15.68767 -15.28127 -15.11373 -14.81688 -14.59131 -14.42310 -14.40763 -14.05285 -13.78477 -13.58876 -13.26378 -13.16748 -12.94369 -12.74832 -12.62744 -12.58692 -12.48868 -12.37770 -12.36814 -12.08989 -12.00324 -11.86357 -11.78381 -11.62601 -11.51011 -11.39501 -10.70299 -10.61947 -9.99269 -9.49933 -9.33284 -8.95676 -8.20798 -6.30622 0.16335 0.34363 1.17312 1.41369 1.42574 1.54649 2.40535 2.63543 2.97087 3.11865 3.45879 3.70007 3.80273 3.81862 3.97484 4.01729 4.09876 4.17588 4.27783 4.37397 4.39723 4.40544 4.47993 4.49895 4.58589 4.69227 4.71429 4.73607 4.75946 4.82616 4.84203 4.97075 5.02320 5.06927 5.16807 5.18140 5.23893 5.28352 5.28931 5.32675 5.39830 5.64862 5.64975 5.87462 6.03953 6.09809 6.32486 6.48586 6.64313 6.85447 6.96683 7.39238 8.90183 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.033581 B = 0.001258 C = 0.001243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.604807 B =22258.194905 C =22523.978562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.540 5.540 3 C 0.207 3.793 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.003 3.997 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.266 1.266 12 C 0.025 3.975 13 C 0.127 3.873 14 H 0.093 0.907 15 O -0.561 6.561 16 C 0.040 3.960 17 N -0.695 5.695 18 C 0.060 3.940 19 C -0.103 4.103 20 C -0.075 4.075 21 C -0.079 4.079 22 C -0.110 4.110 23 C -0.117 4.117 24 C -0.055 4.055 25 Cl -0.080 7.080 26 C -0.117 4.117 27 C -0.110 4.110 28 H 0.011 0.989 29 H 0.054 0.946 30 H 0.076 0.924 31 H -0.039 1.039 32 H 0.004 0.996 33 H 0.265 0.735 34 H 0.033 0.967 35 H 0.068 0.932 36 H 0.379 0.621 37 H 0.082 0.918 38 H 0.041 0.959 39 H 0.347 0.653 40 H 0.035 0.965 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.146 0.854 47 H 0.141 0.859 48 H 0.142 0.858 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.685 -31.754 13.657 34.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.264 5.264 3 C 0.081 3.919 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.195 4.195 7 N -0.575 5.575 8 Si 0.793 3.207 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.191 1.191 12 C -0.105 4.105 13 C 0.067 3.933 14 H 0.111 0.889 15 O -0.366 6.366 16 C -0.090 4.090 17 N -0.327 5.327 18 C -0.069 4.069 19 C -0.141 4.141 20 C -0.113 4.113 21 C -0.079 4.079 22 C -0.128 4.128 23 C -0.136 4.136 24 C -0.082 4.082 25 Cl -0.052 7.052 26 C -0.136 4.136 27 C -0.128 4.128 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.094 0.906 31 H -0.021 1.021 32 H 0.023 0.977 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.227 0.773 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.166 0.834 40 H 0.054 0.946 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.164 0.836 47 H 0.159 0.841 48 H 0.160 0.840 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.739 -31.994 13.270 34.681 hybrid contribution 1.085 1.124 0.178 1.573 sum -0.654 -30.870 13.448 33.678 Atomic orbital electron populations 1.22228 0.87894 1.01059 0.99640 1.61937 1.07939 1.14871 1.41690 1.19396 0.93656 0.83952 0.94892 1.21478 1.34831 0.97525 1.02444 0.92135 1.25895 0.94966 0.97995 1.00681 1.70080 1.39373 1.11877 1.36196 0.85387 0.77994 0.78076 0.79197 1.19793 1.20595 1.19075 1.22833 1.00220 0.95373 0.92031 1.21804 0.97680 0.88816 0.84959 0.88913 1.86578 1.24069 1.83676 1.42306 1.22470 0.99040 0.89325 0.98210 1.60333 1.64766 1.01672 1.05947 1.22008 0.98221 0.93312 0.93338 1.21434 1.01844 0.93032 0.97747 1.20570 1.02652 0.89370 0.98668 1.20196 0.94072 0.96554 0.97052 1.21292 0.96780 0.94957 0.99809 1.21265 0.99812 0.93431 0.99092 1.21129 0.96781 0.85831 1.04448 1.98370 1.93308 1.17605 1.95872 1.21269 0.95189 0.96914 1.00223 1.21287 1.00653 0.92228 0.98670 0.97025 0.92678 0.90589 1.02136 0.97743 0.92672 0.94907 0.91356 0.77319 0.90005 0.94035 0.83361 0.94634 0.90884 0.91821 0.92044 0.89754 0.89735 0.83606 0.84071 0.84039 0.83535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 9.14 127.69 1.17 2.75 16 2 N -0.54 -23.55 4.70 -927.07 -4.36 -27.91 16 3 C 0.21 11.17 4.72 85.56 0.40 11.58 16 4 C -0.52 -30.24 8.46 25.60 0.22 -30.03 16 5 H 0.06 3.46 7.12 -2.91 -0.02 3.44 16 6 C 0.00 0.15 5.46 84.65 0.46 0.61 16 7 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16 8 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 C 0.02 0.83 4.60 86.31 0.40 1.23 16 13 C 0.13 3.43 3.19 30.59 0.10 3.52 16 14 H 0.09 2.72 6.34 -2.39 -0.02 2.71 16 15 O -0.56 -15.88 12.62 -148.98 -1.88 -17.77 16 16 C 0.04 0.80 5.39 86.30 0.47 1.27 16 17 N -0.69 -12.83 6.50 -513.88 -3.34 -16.18 16 18 C 0.06 0.81 5.69 86.30 0.49 1.30 16 19 C -0.10 -1.19 5.46 30.59 0.17 -1.02 16 20 C -0.07 -0.65 5.35 29.85 0.16 -0.49 16 21 C -0.08 -0.87 5.13 -19.86 -0.10 -0.97 16 22 C -0.11 -1.25 9.70 22.26 0.22 -1.04 16 23 C -0.12 -1.49 9.83 22.29 0.22 -1.27 16 24 C -0.06 -0.78 6.32 22.33 0.14 -0.64 16 25 Cl -0.08 -1.14 28.96 -2.72 -0.08 -1.22 16 26 C -0.12 -1.46 9.83 22.29 0.22 -1.25 16 27 C -0.11 -1.22 9.70 22.26 0.22 -1.00 16 28 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.05 2.37 6.76 -2.39 -0.02 2.36 16 30 H 0.08 2.57 6.37 -2.38 -0.02 2.56 16 31 H -0.04 -2.27 8.12 -2.39 -0.02 -2.29 16 32 H 0.00 0.26 7.93 -2.38 -0.02 0.24 16 33 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 34 H 0.03 1.09 8.12 -2.39 -0.02 1.07 16 35 H 0.07 2.29 7.93 -2.39 -0.02 2.27 16 36 H 0.38 8.44 9.05 -74.05 -0.67 7.77 16 37 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.35 6.50 8.12 -89.69 -0.73 5.77 16 40 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.08 0.60 8.09 -2.39 -0.02 0.58 16 45 H 0.08 0.62 8.08 -2.38 -0.02 0.60 16 46 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 47 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 48 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 49 H 0.15 1.08 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -67.60 414.45 -2.87 -70.48 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -0.46 Total: 17.48 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 4.94 Total: -15.44 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -7.41 Total: -100.23 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -1.88 Total: -17.77 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.22 kcal Total: -67.60 -2.87 -70.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574445375.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.140 kcal (2) G-P(sol) polarization free energy of solvation -67.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds