Wall clock time and date at job start Sat Apr 11 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47865 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47143 * 300.00270 * 3 2 1 6 6 H 1.48510 * 109.47416 * 59.99883 * 3 2 1 7 7 C 1.37884 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99677 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99739 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46952 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47157 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47120 * 179.97438 * 11 10 9 13 13 C 1.34783 * 119.99723 * 179.97438 * 12 11 10 14 14 O 1.21344 * 120.00298 * 0.02562 * 13 12 11 15 15 C 1.49449 * 119.99655 * 180.02562 * 13 12 11 16 16 O 1.21351 * 120.00021 * 353.32202 * 15 13 12 17 17 N 1.34773 * 119.99938 * 173.32734 * 15 13 12 18 18 C 1.47154 * 120.98273 * 352.09958 * 17 15 13 19 19 C 1.53298 * 108.38609 * 230.55892 * 18 17 15 20 20 O 1.42963 * 109.22374 * 307.70211 * 19 18 17 21 21 C 1.42958 * 114.16757 * 62.57446 * 20 19 18 22 22 H 1.08998 * 109.51252 * 57.34952 * 21 20 19 23 23 C 1.53007 * 109.51005 * 177.49725 * 21 20 19 24 24 H 1.09001 * 110.32978 * 62.00066 * 23 21 20 25 25 C 1.54477 * 110.37000 * 299.75117 * 23 21 20 26 26 C 1.54508 * 104.05984 * 217.18971 * 25 23 21 27 27 C 1.54478 * 104.06464 * 359.97438 * 26 25 23 28 28 O 1.44423 * 104.80394 * 23.98040 * 27 26 25 29 29 C 1.47158 * 120.98312 * 172.12929 * 17 15 13 30 30 H 0.97001 * 119.99942 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.47345 * 59.99318 * 9 7 2 32 32 H 1.09005 * 109.46848 * 299.99336 * 9 7 2 33 33 H 1.08993 * 109.47620 * 59.99525 * 10 9 7 34 34 H 1.09005 * 109.46833 * 299.99384 * 10 9 7 35 35 H 1.09002 * 109.47530 * 59.99290 * 11 10 9 36 36 H 1.09005 * 109.46667 * 299.99389 * 11 10 9 37 37 H 0.97000 * 119.99862 * 0.02562 * 12 11 10 38 38 H 1.09001 * 109.68021 * 110.83665 * 18 17 15 39 39 H 1.09005 * 109.71016 * 350.30227 * 18 17 15 40 40 H 1.08996 * 109.51029 * 187.77140 * 19 18 17 41 41 H 1.09000 * 109.50646 * 67.62167 * 19 18 17 42 42 H 1.08998 * 110.51306 * 335.82910 * 25 23 21 43 43 H 1.09002 * 110.51435 * 98.54987 * 25 23 21 44 44 H 1.09000 * 110.51456 * 118.64789 * 26 25 23 45 45 H 1.09001 * 110.51358 * 241.21693 * 26 25 23 46 46 H 1.09004 * 110.37248 * 142.80685 * 27 26 25 47 47 H 1.08997 * 110.37436 * 265.03559 * 27 26 25 48 48 H 1.08994 * 109.68000 * 9.71253 * 29 17 15 49 49 H 1.09003 * 109.67416 * 249.16228 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 7 2.4322 -6.1006 -0.0007 13 6 1.9829 -7.3713 -0.0008 14 8 0.7899 -7.5931 -0.0009 15 6 2.9541 -8.5073 -0.0009 16 8 4.1417 -8.2901 -0.1230 17 7 2.5108 -9.7728 0.1346 18 6 1.1021 -10.0517 0.4556 19 6 1.0593 -11.0183 1.6447 20 8 1.8821 -12.1521 1.3595 21 6 3.2657 -11.8408 1.1795 22 1 3.6450 -11.3399 2.0701 23 6 4.0532 -13.1311 0.9431 24 1 3.7091 -13.6237 0.0337 25 6 3.9097 -14.0783 2.1550 26 6 5.3025 -14.7344 2.2856 27 6 6.1225 -14.1065 1.1369 28 8 5.4671 -12.8497 0.8598 29 6 3.4215 -10.9165 -0.0334 30 1 -0.4850 0.8401 0.0004 31 1 0.6246 -2.5571 -0.8895 32 1 0.6241 -2.5567 0.8904 33 1 2.8719 -3.6044 0.8904 34 1 2.8718 -3.6044 -0.8896 35 1 0.8537 -5.0446 -0.8903 36 1 0.8534 -5.0451 0.8898 37 1 3.3859 -5.9234 -0.0003 38 1 0.6126 -10.5071 -0.4053 39 1 0.5942 -9.1237 0.7183 40 1 0.0331 -11.3456 1.8110 41 1 1.4306 -10.5142 2.5370 42 1 3.6680 -13.5130 3.0550 43 1 3.1484 -14.8339 1.9612 44 1 5.7492 -14.4935 3.2503 45 1 5.2293 -15.8145 2.1589 46 1 7.1513 -13.9360 1.4541 47 1 6.0990 -14.7505 0.2578 48 1 4.4500 -10.5609 -0.0943 49 1 3.1654 -11.4588 -0.9436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588052412.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:27 Heat of formation + Delta-G solvation = -152.969739 kcal Electronic energy + Delta-G solvation = -29560.030319 eV Core-core repulsion = 25294.601701 eV Total energy + Delta-G solvation = -4265.428619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.19235 -40.13829 -39.01058 -38.22267 -36.00247 -34.89485 -33.35496 -32.80981 -32.45853 -31.29058 -29.30447 -28.31603 -27.04417 -25.03498 -24.24636 -23.10875 -22.41939 -21.52841 -21.30031 -20.82987 -19.71121 -17.90683 -17.40534 -17.15180 -16.65938 -16.51494 -16.42105 -16.10459 -15.84187 -15.57064 -15.08388 -15.02728 -14.78824 -14.52001 -14.41465 -14.16774 -13.93949 -13.91124 -13.33273 -13.07770 -12.58101 -12.33161 -12.23287 -11.91240 -11.90405 -11.83480 -11.72320 -11.69651 -11.37162 -11.15001 -10.97550 -10.93600 -10.79461 -10.61246 -10.56719 -10.25503 -9.93833 -9.65863 -9.30414 -9.14273 -9.03083 -8.92136 -8.40123 -6.04727 -4.07651 1.32216 2.12866 2.77076 3.09458 3.29017 3.35173 3.37030 3.41081 3.84462 4.06110 4.13169 4.31295 4.41662 4.43441 4.44003 4.56246 4.63788 4.68877 4.81126 4.86191 5.00689 5.10194 5.17843 5.24623 5.28011 5.31482 5.37695 5.42130 5.49041 5.53999 5.54688 5.60361 5.64560 5.67122 5.92834 6.03477 6.27430 6.31642 6.50286 6.65364 6.69268 6.78785 6.92061 7.23085 7.59485 7.62740 7.70590 7.93402 7.96717 8.34817 8.99038 9.56924 11.06538 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026742 B = 0.001716 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.772117 B =16311.937497 C =16990.890595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.687 5.687 13 C 0.503 3.497 14 O -0.519 6.519 15 C 0.510 3.490 16 O -0.516 6.516 17 N -0.591 5.591 18 C 0.040 3.960 19 C 0.050 3.950 20 O -0.374 6.374 21 C 0.088 3.912 22 H 0.073 0.927 23 C 0.085 3.915 24 H 0.081 0.919 25 C -0.141 4.141 26 C -0.158 4.158 27 C 0.046 3.954 28 O -0.365 6.365 29 C 0.084 3.916 30 H 0.261 0.739 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.412 0.588 38 H 0.079 0.921 39 H 0.149 0.851 40 H 0.113 0.887 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.094 0.906 47 H 0.062 0.938 48 H 0.110 0.890 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.768 -32.561 3.777 33.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.338 5.338 13 C 0.284 3.716 14 O -0.398 6.398 15 C 0.293 3.707 16 O -0.391 6.391 17 N -0.325 5.325 18 C -0.082 4.082 19 C -0.027 4.027 20 O -0.293 6.293 21 C 0.029 3.971 22 H 0.091 0.909 23 C 0.027 3.973 24 H 0.098 0.902 25 C -0.179 4.179 26 C -0.196 4.196 27 C -0.031 4.031 28 O -0.284 6.284 29 C -0.038 4.038 30 H 0.070 0.930 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.248 0.752 38 H 0.097 0.903 39 H 0.166 0.834 40 H 0.131 0.869 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.113 0.887 47 H 0.080 0.920 48 H 0.128 0.872 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.441 -32.411 3.640 33.244 hybrid contribution 0.801 0.995 0.003 1.278 sum 7.242 -31.416 3.643 32.445 Atomic orbital electron populations 1.69970 1.06055 1.26618 1.50617 1.25026 0.94868 0.99342 0.95215 0.86518 0.80088 0.83675 0.77602 1.19730 1.20993 1.20989 1.21240 0.93109 0.90868 1.50889 0.92503 1.19038 0.93791 0.90790 0.97733 1.21936 0.99905 0.92916 1.01373 1.21883 0.91716 0.84673 1.02631 1.46125 1.12372 1.04937 1.70374 1.19979 0.88396 0.84486 0.78746 1.90508 1.16359 1.83340 1.49603 1.20311 0.88569 0.83973 0.77817 1.90767 1.16388 1.84012 1.47952 1.47941 1.11272 1.04740 1.68592 1.23491 0.81399 1.04474 0.98843 1.23117 0.95982 0.86960 0.96635 1.87862 1.17111 1.32574 1.91790 1.22233 0.82787 0.94199 0.97878 0.90901 1.22720 0.82289 0.93553 0.98787 0.90151 1.22862 0.97351 0.98914 0.98742 1.22984 0.95681 1.00882 1.00016 1.23436 0.97496 0.85264 0.96892 1.89133 1.16439 1.30778 1.92050 1.22372 0.96589 0.86528 0.98349 0.92969 0.96170 0.96171 0.92400 0.92384 0.90951 0.90948 0.75202 0.90259 0.83431 0.86938 0.92488 0.90402 0.89954 0.90546 0.90372 0.88731 0.91977 0.87150 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.11 1.87 5.67 -4.04 -0.02 1.85 16 12 N -0.69 -10.10 5.55 -60.73 -0.34 -10.43 16 13 C 0.50 7.37 7.74 -11.58 -0.09 7.28 16 14 O -0.52 -8.13 13.21 5.50 0.07 -8.06 16 15 C 0.51 7.09 7.75 -11.59 -0.09 7.00 16 16 O -0.52 -8.12 15.97 5.50 0.09 -8.04 16 17 N -0.59 -6.89 3.02 -172.78 -0.52 -7.41 16 18 C 0.04 0.39 6.13 -3.53 -0.02 0.37 16 19 C 0.05 0.40 6.99 37.31 0.26 0.66 16 20 O -0.37 -3.35 10.07 -35.23 -0.35 -3.71 16 21 C 0.09 0.79 2.45 -26.58 -0.07 0.73 16 22 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 23 C 0.08 0.66 3.02 -25.95 -0.08 0.58 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 25 C -0.14 -0.88 6.34 -25.16 -0.16 -1.04 16 26 C -0.16 -0.78 7.09 -25.16 -0.18 -0.96 16 27 C 0.05 0.27 7.63 37.93 0.29 0.56 16 28 O -0.36 -3.29 11.08 -35.23 -0.39 -3.68 16 29 C 0.08 0.87 5.77 -3.53 -0.02 0.85 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.41 5.61 7.96 -40.82 -0.33 5.28 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.15 1.68 4.50 -53.94 -0.24 1.44 16 40 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.52 7.87 -51.93 -0.41 0.12 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 48 H 0.11 1.30 7.00 -51.93 -0.36 0.94 16 49 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 396.24 15.07 5.97 5.97 Total: -1.00 -32.04 396.24 -8.69 -40.73 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -8.07 Total: 1.39 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -0.87 Total: 2.58 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: -0.12 Total: -43.58 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.58 Total: -23.48 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.04 -8.69 -40.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588052412.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.241 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds