Wall clock time and date at job start Sat Apr 11 2020 06:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47865 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47143 * 300.00270 * 3 2 1 6 6 H 1.48510 * 109.47416 * 59.99883 * 3 2 1 7 7 C 1.37884 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99677 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99739 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46952 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47157 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47120 * 179.97438 * 11 10 9 13 13 C 1.34783 * 119.99723 * 179.97438 * 12 11 10 14 14 O 1.21344 * 120.00298 * 0.02562 * 13 12 11 15 15 C 1.49449 * 119.99655 * 180.02562 * 13 12 11 16 16 O 1.21351 * 120.00021 * 353.32202 * 15 13 12 17 17 N 1.34773 * 119.99938 * 173.32734 * 15 13 12 18 18 C 1.47154 * 120.98273 * 352.09958 * 17 15 13 19 19 C 1.53298 * 108.38609 * 230.55892 * 18 17 15 20 20 O 1.42963 * 109.22374 * 307.70211 * 19 18 17 21 21 C 1.42958 * 114.16757 * 62.57446 * 20 19 18 22 22 H 1.08998 * 109.51252 * 57.34952 * 21 20 19 23 23 C 1.53007 * 109.51005 * 177.49725 * 21 20 19 24 24 H 1.09001 * 110.32978 * 62.00066 * 23 21 20 25 25 C 1.54477 * 110.37000 * 299.75117 * 23 21 20 26 26 C 1.54508 * 104.05984 * 217.18971 * 25 23 21 27 27 C 1.54478 * 104.06464 * 359.97438 * 26 25 23 28 28 O 1.44423 * 104.80394 * 23.98040 * 27 26 25 29 29 C 1.47158 * 120.98312 * 172.12929 * 17 15 13 30 30 H 0.97001 * 119.99942 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.47345 * 59.99318 * 9 7 2 32 32 H 1.09005 * 109.46848 * 299.99336 * 9 7 2 33 33 H 1.08993 * 109.47620 * 59.99525 * 10 9 7 34 34 H 1.09005 * 109.46833 * 299.99384 * 10 9 7 35 35 H 1.09002 * 109.47530 * 59.99290 * 11 10 9 36 36 H 1.09005 * 109.46667 * 299.99389 * 11 10 9 37 37 H 0.97000 * 119.99862 * 0.02562 * 12 11 10 38 38 H 1.09001 * 109.68021 * 110.83665 * 18 17 15 39 39 H 1.09005 * 109.71016 * 350.30227 * 18 17 15 40 40 H 1.08996 * 109.51029 * 187.77140 * 19 18 17 41 41 H 1.09000 * 109.50646 * 67.62167 * 19 18 17 42 42 H 1.08998 * 110.51306 * 335.82910 * 25 23 21 43 43 H 1.09002 * 110.51435 * 98.54987 * 25 23 21 44 44 H 1.09000 * 110.51456 * 118.64789 * 26 25 23 45 45 H 1.09001 * 110.51358 * 241.21693 * 26 25 23 46 46 H 1.09004 * 110.37248 * 142.80685 * 27 26 25 47 47 H 1.08997 * 110.37436 * 265.03559 * 27 26 25 48 48 H 1.08994 * 109.68000 * 9.71253 * 29 17 15 49 49 H 1.09003 * 109.67416 * 249.16228 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 7 2.4322 -6.1006 -0.0007 13 6 1.9829 -7.3713 -0.0008 14 8 0.7899 -7.5931 -0.0009 15 6 2.9541 -8.5073 -0.0009 16 8 4.1417 -8.2901 -0.1230 17 7 2.5108 -9.7728 0.1346 18 6 1.1021 -10.0517 0.4556 19 6 1.0593 -11.0183 1.6447 20 8 1.8821 -12.1521 1.3595 21 6 3.2657 -11.8408 1.1795 22 1 3.6450 -11.3399 2.0701 23 6 4.0532 -13.1311 0.9431 24 1 3.7091 -13.6237 0.0337 25 6 3.9097 -14.0783 2.1550 26 6 5.3025 -14.7344 2.2856 27 6 6.1225 -14.1065 1.1369 28 8 5.4671 -12.8497 0.8598 29 6 3.4215 -10.9165 -0.0334 30 1 -0.4850 0.8401 0.0004 31 1 0.6246 -2.5571 -0.8895 32 1 0.6241 -2.5567 0.8904 33 1 2.8719 -3.6044 0.8904 34 1 2.8718 -3.6044 -0.8896 35 1 0.8537 -5.0446 -0.8903 36 1 0.8534 -5.0451 0.8898 37 1 3.3859 -5.9234 -0.0003 38 1 0.6126 -10.5071 -0.4053 39 1 0.5942 -9.1237 0.7183 40 1 0.0331 -11.3456 1.8110 41 1 1.4306 -10.5142 2.5370 42 1 3.6680 -13.5130 3.0550 43 1 3.1484 -14.8339 1.9612 44 1 5.7492 -14.4935 3.2503 45 1 5.2293 -15.8145 2.1589 46 1 7.1513 -13.9360 1.4541 47 1 6.0990 -14.7505 0.2578 48 1 4.4500 -10.5609 -0.0943 49 1 3.1654 -11.4588 -0.9436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588052412.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:26 Heat of formation + Delta-G solvation = -175.622534 kcal Electronic energy + Delta-G solvation = -29561.012618 eV Core-core repulsion = 25294.601701 eV Total energy + Delta-G solvation = -4266.410918 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.21037 -40.89341 -39.87904 -39.20598 -37.32291 -36.02974 -35.15119 -33.49351 -33.07013 -32.96455 -29.99682 -29.37715 -28.54501 -26.12994 -25.29108 -24.34533 -23.21899 -22.40754 -22.31521 -21.93210 -20.90831 -18.98490 -18.51994 -18.30462 -17.87739 -17.54269 -17.18201 -17.10880 -16.78927 -16.46249 -16.40850 -16.20470 -16.01599 -15.60768 -15.28257 -15.13567 -14.93807 -14.64320 -14.41307 -14.29326 -13.84157 -13.74067 -13.56580 -13.34103 -12.79481 -12.72869 -12.58595 -12.51538 -12.46004 -12.38339 -12.27735 -12.18869 -11.80859 -11.70830 -11.57174 -11.50764 -11.34474 -11.20512 -10.80791 -10.55587 -10.49719 -10.26829 -9.83325 -8.19992 -6.30552 0.17787 1.07060 1.41212 1.42092 1.54785 1.95165 2.11171 2.31562 2.42501 3.14114 3.14757 3.26689 3.44545 3.60465 3.77234 3.81210 3.96682 4.06170 4.06630 4.10476 4.13704 4.17695 4.30349 4.37300 4.45884 4.47150 4.51972 4.63240 4.70364 4.77905 4.84730 4.87684 4.91050 4.95539 4.99470 5.02657 5.11985 5.14604 5.15909 5.29133 5.51672 5.70682 5.75114 5.80408 5.84344 5.98783 6.07847 6.23522 6.52492 6.79415 6.86501 7.38814 8.91945 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026742 B = 0.001716 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.772117 B =16311.937497 C =16990.890595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.025 3.975 10 C -0.107 4.107 11 C 0.128 3.872 12 N -0.683 5.683 13 C 0.506 3.494 14 O -0.530 6.530 15 C 0.511 3.489 16 O -0.540 6.540 17 N -0.585 5.585 18 C 0.038 3.962 19 C 0.052 3.948 20 O -0.374 6.374 21 C 0.094 3.906 22 H 0.061 0.939 23 C 0.084 3.916 24 H 0.089 0.911 25 C -0.139 4.139 26 C -0.153 4.153 27 C 0.038 3.962 28 O -0.392 6.392 29 C 0.084 3.916 30 H 0.263 0.737 31 H -0.003 1.003 32 H -0.002 1.002 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.418 0.582 38 H 0.088 0.912 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.074 0.926 48 H 0.094 0.906 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.596 -34.068 4.042 35.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.081 0.919 9 C -0.013 4.013 10 C -0.145 4.145 11 C 0.005 3.995 12 N -0.335 5.335 13 C 0.287 3.713 14 O -0.409 6.409 15 C 0.294 3.706 16 O -0.417 6.417 17 N -0.319 5.319 18 C -0.083 4.083 19 C -0.024 4.024 20 O -0.292 6.292 21 C 0.035 3.965 22 H 0.079 0.921 23 C 0.026 3.974 24 H 0.106 0.894 25 C -0.177 4.177 26 C -0.190 4.190 27 C -0.038 4.038 28 O -0.312 6.312 29 C -0.038 4.038 30 H 0.072 0.928 31 H 0.016 0.984 32 H 0.017 0.983 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.256 0.744 38 H 0.107 0.893 39 H 0.153 0.847 40 H 0.157 0.843 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.111 0.889 44 H 0.095 0.905 45 H 0.114 0.886 46 H 0.119 0.881 47 H 0.092 0.908 48 H 0.113 0.887 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.272 -33.962 3.912 34.951 hybrid contribution 0.502 1.393 -0.083 1.483 sum 7.774 -32.568 3.829 33.701 Atomic orbital electron populations 1.70096 1.07735 1.27698 1.51660 1.25958 0.95754 1.03319 0.94809 0.85409 0.79108 0.78899 0.77670 1.18580 1.20555 1.20491 1.21711 0.93691 0.92198 1.50459 0.91891 1.18936 0.94333 0.92475 0.95551 1.21649 0.98681 0.92024 1.02158 1.21518 0.91467 0.84210 1.02303 1.45938 1.12371 1.04594 1.70599 1.20121 0.88403 0.84538 0.78254 1.90525 1.16847 1.83601 1.49891 1.20113 0.87979 0.84440 0.78091 1.90757 1.17031 1.84378 1.49547 1.48080 1.12301 1.04341 1.67157 1.23556 0.80180 1.04436 1.00086 1.23218 0.97289 0.86430 0.95499 1.87873 1.16926 1.32783 1.91662 1.22169 0.83148 0.94636 0.96577 0.92075 1.22771 0.81778 0.92983 0.99868 0.89367 1.22859 0.98453 0.98772 0.97636 1.22978 0.94593 1.01793 0.99681 1.23646 0.97810 0.84489 0.97837 1.89109 1.17143 1.32612 1.92312 1.22472 0.95470 0.86146 0.99708 0.92792 0.98442 0.98314 0.91482 0.91647 0.91513 0.91191 0.74435 0.89327 0.84678 0.84261 0.92552 0.91178 0.88915 0.90452 0.88551 0.88072 0.90785 0.88737 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.01 13.29 21.45 0.28 -55.73 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.54 -30.12 9.11 25.60 0.23 -29.89 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.11 -4.07 5.27 30.59 0.16 -3.91 16 11 C 0.13 4.22 5.67 86.38 0.49 4.71 16 12 N -0.68 -19.75 5.55 -464.40 -2.58 -22.32 16 13 C 0.51 14.63 7.74 87.27 0.68 15.30 16 14 O -0.53 -16.36 13.21 -3.23 -0.04 -16.40 16 15 C 0.51 14.07 7.75 87.27 0.68 14.75 16 16 O -0.54 -17.00 15.97 -3.25 -0.05 -17.06 16 17 N -0.59 -13.28 3.02 -818.92 -2.47 -15.76 16 18 C 0.04 0.72 6.13 86.35 0.53 1.25 16 19 C 0.05 0.75 6.99 72.08 0.50 1.26 16 20 O -0.37 -6.04 10.07 -148.98 -1.50 -7.54 16 21 C 0.09 1.61 2.45 30.69 0.08 1.69 16 22 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 23 C 0.08 1.20 3.02 31.10 0.09 1.30 16 24 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 25 C -0.14 -1.51 6.34 31.61 0.20 -1.31 16 26 C -0.15 -1.23 7.09 31.61 0.22 -1.01 16 27 C 0.04 0.40 7.63 72.48 0.55 0.95 16 28 O -0.39 -6.78 11.08 -148.98 -1.65 -8.44 16 29 C 0.08 1.68 5.77 86.35 0.50 2.18 16 30 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 31 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 33 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 35 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 37 H 0.42 11.11 7.96 -92.71 -0.74 10.37 16 38 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.14 2.97 4.50 -34.28 -0.15 2.81 16 40 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.07 0.86 7.87 -2.39 -0.02 0.84 16 43 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 44 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.09 2.25 7.00 -2.39 -0.02 2.23 16 49 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -68.56 396.24 -0.39 -68.95 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.07 Total: 19.36 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 5.53 Total: 9.10 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -4.76 Total: -93.81 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -3.25 Total: -49.43 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -68.56 -0.39 -68.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588052412.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.673 kcal (2) G-P(sol) polarization free energy of solvation -68.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds