Wall clock time and date at job start Sat Apr 11 2020 06:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99797 * 2 1 4 4 H 1.48502 * 109.47190 * 269.99648 * 3 2 1 5 5 H 1.48500 * 109.47411 * 30.00331 * 3 2 1 6 6 H 1.48504 * 109.46716 * 150.00070 * 3 2 1 7 7 C 1.38806 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00161 * 163.06584 * 7 2 1 9 9 N 1.36942 * 119.99970 * 343.06863 * 7 2 1 10 10 C 1.46925 * 120.62905 * 331.83873 * 9 7 2 11 11 C 1.53193 * 108.77060 * 233.63088 * 10 9 7 12 12 C 1.53045 * 109.31274 * 305.36058 * 11 10 9 13 13 N 1.46903 * 109.46119 * 181.38828 * 12 11 10 14 14 C 1.46893 * 110.99870 * 154.97437 * 13 12 11 15 15 C 1.50707 * 109.47013 * 179.97438 * 14 13 12 16 16 C 1.38266 * 119.94568 * 269.73235 * 15 14 13 17 17 C 1.38144 * 120.05044 * 179.72418 * 16 15 14 18 18 C 1.38728 * 119.94551 * 0.56932 * 17 16 15 19 19 O 1.35904 * 120.05188 * 179.68493 * 18 17 16 20 20 C 1.42899 * 117.00445 * 0.02562 * 19 18 17 21 21 C 1.52997 * 109.47131 * 180.02562 * 20 19 18 22 22 F 1.39899 * 109.47166 * 300.00168 * 21 20 19 23 23 F 1.39902 * 109.47419 * 60.00202 * 21 20 19 24 24 C 1.38729 * 119.89283 * 359.70367 * 18 17 16 25 25 C 1.38147 * 119.93822 * 359.97438 * 24 18 17 26 26 C 1.53043 * 109.52427 * 61.37930 * 12 11 10 27 27 C 1.46927 * 120.62679 * 151.85988 * 9 7 2 28 28 H 0.97004 * 119.99730 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.58612 * 113.84467 * 10 9 7 30 30 H 1.08995 * 109.70068 * 353.48522 * 10 9 7 31 31 H 1.09002 * 109.49469 * 185.41793 * 11 10 9 32 32 H 1.08996 * 109.52665 * 65.33568 * 11 10 9 33 33 H 1.08996 * 109.46494 * 301.36426 * 12 11 10 34 34 H 1.00904 * 110.99788 * 278.93429 * 13 12 11 35 35 H 1.09000 * 109.47669 * 299.99865 * 14 13 12 36 36 H 1.09002 * 109.47370 * 60.00846 * 14 13 12 37 37 H 1.07990 * 119.97140 * 359.97271 * 16 15 14 38 38 H 1.08007 * 120.02450 * 180.24340 * 17 16 15 39 39 H 1.08994 * 109.46930 * 300.00598 * 20 19 18 40 40 H 1.08997 * 109.46611 * 60.00441 * 20 19 18 41 41 H 1.09007 * 109.46665 * 180.02562 * 21 20 19 42 42 H 1.07993 * 120.03289 * 179.97438 * 24 18 17 43 43 H 1.08006 * 119.96521 * 180.02562 * 25 24 18 44 44 H 1.08998 * 109.50143 * 58.57638 * 26 12 11 45 45 H 1.08994 * 109.49753 * 178.67885 * 26 12 11 46 46 H 1.09004 * 109.58273 * 246.15604 * 27 9 7 47 47 H 1.08994 * 109.58971 * 6.43535 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2719 9 7 1.3701 -2.3622 0.3464 10 6 0.2263 -2.3397 1.2683 11 6 0.4984 -3.3180 2.4154 12 6 0.8134 -4.6999 1.8381 13 7 1.0423 -5.6485 2.9362 14 6 0.7619 -7.0257 2.5091 15 6 1.0079 -7.9682 3.6592 16 6 2.2592 -8.5289 3.8365 17 6 2.4886 -9.3886 4.8932 18 6 1.4591 -9.6985 5.7699 19 8 1.6807 -10.5490 6.8065 20 6 2.9983 -11.0871 6.9340 21 6 3.0546 -12.0160 8.1484 22 9 2.7318 -11.2946 9.3027 23 9 2.1388 -13.0601 7.9797 24 6 0.2029 -9.1390 5.5866 25 6 -0.0196 -8.2746 4.5321 26 6 2.0687 -4.6163 0.9667 27 6 1.8144 -3.6529 -0.1970 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6767 -2.6411 0.7376 30 1 0.0966 -1.3342 1.6686 31 1 -0.3820 -3.3829 3.0547 32 1 1.3478 -2.9659 3.0007 33 1 -0.0266 -5.0408 1.2330 34 1 1.9813 -5.5654 3.2960 35 1 -0.2779 -7.1032 2.1915 36 1 1.4163 -7.2888 1.6781 37 1 3.0589 -8.2914 3.1507 38 1 3.4673 -9.8233 5.0336 39 1 3.2497 -11.6494 6.0348 40 1 3.7118 -10.2736 7.0651 41 1 4.0599 -12.4261 8.2458 42 1 -0.6002 -9.3789 6.2674 43 1 -0.9973 -7.8385 4.3892 44 1 2.9035 -4.2516 1.5653 45 1 2.3061 -5.6052 0.5748 46 1 1.0407 -4.0613 -0.8473 47 1 2.7335 -3.5130 -0.7659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610270910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:00 Heat of formation + Delta-G solvation = -96.178277 kcal Electronic energy + Delta-G solvation = -28519.934163 eV Core-core repulsion = 24145.880691 eV Total energy + Delta-G solvation = -4374.053472 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.42873 -47.45979 -40.48831 -38.52502 -37.65001 -35.05687 -32.57340 -31.59482 -31.03412 -30.40440 -29.79220 -28.56393 -25.44766 -24.37481 -23.92357 -22.51808 -22.06747 -21.36141 -21.20569 -19.22961 -19.04311 -18.01069 -17.48739 -17.33208 -16.85418 -16.00252 -15.78001 -15.72783 -14.99106 -14.73379 -14.60456 -14.44159 -14.29781 -13.80996 -13.80513 -13.66989 -13.55801 -13.39563 -13.03619 -12.97137 -12.87576 -12.78002 -12.31188 -12.04832 -11.65356 -11.56198 -11.38059 -11.32192 -11.07360 -11.01155 -10.76460 -10.69260 -10.23165 -10.21185 -9.97543 -9.70584 -9.46512 -9.21254 -8.47912 -8.41568 -8.02048 -6.64948 -5.77232 -3.19512 1.13216 1.16751 2.44572 3.20516 3.38040 3.45178 3.47537 3.49813 3.56337 3.85223 4.26861 4.44616 4.49578 4.51002 4.58851 4.65140 4.74450 4.84870 5.07545 5.17859 5.31789 5.36130 5.43703 5.49688 5.52700 5.67870 5.70840 5.84239 5.89920 6.00349 6.09735 6.10045 6.31953 6.47207 6.49056 6.50967 6.62265 6.64200 6.71358 6.86653 6.95430 6.99666 7.34163 7.40641 7.64107 7.71457 7.81259 8.47371 9.23457 9.86943 10.43836 11.31325 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.028224 B = 0.001647 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.810079 B =16993.955476 C =17187.400426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.171 3.829 11 C -0.125 4.125 12 C 0.095 3.905 13 N -0.682 5.682 14 C 0.099 3.901 15 C -0.108 4.108 16 C -0.075 4.075 17 C -0.208 4.208 18 C 0.120 3.880 19 O -0.306 6.306 20 C 0.006 3.994 21 C 0.273 3.727 22 F -0.197 7.197 23 F -0.198 7.198 24 C -0.147 4.147 25 C -0.057 4.057 26 C -0.160 4.160 27 C 0.149 3.851 28 H 0.254 0.746 29 H 0.017 0.983 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.337 0.663 35 H 0.078 0.922 36 H 0.036 0.964 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.058 0.942 45 H 0.044 0.956 46 H 0.016 0.984 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.017 -25.289 13.196 29.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.081 0.919 9 N -0.315 5.315 10 C 0.044 3.956 11 C -0.164 4.164 12 C -0.014 4.014 13 N -0.312 5.312 14 C -0.029 4.029 15 C -0.108 4.108 16 C -0.093 4.093 17 C -0.227 4.227 18 C 0.075 3.925 19 O -0.220 6.220 20 C -0.071 4.071 21 C 0.220 3.780 22 F -0.178 7.178 23 F -0.179 7.179 24 C -0.165 4.165 25 C -0.076 4.076 26 C -0.201 4.201 27 C 0.022 3.978 28 H 0.064 0.936 29 H 0.035 0.965 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.155 0.845 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.151 0.849 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.034 0.966 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.106 -25.113 13.631 29.027 hybrid contribution 1.425 0.624 -0.618 1.673 sum 6.530 -24.489 13.014 28.491 Atomic orbital electron populations 1.70033 1.05251 1.25475 1.53910 1.25040 0.95281 0.98387 1.00945 0.86319 0.79176 0.83736 0.77668 1.21437 1.21531 1.20537 1.19155 0.92474 0.84888 1.41693 0.91872 1.44063 1.35933 1.01393 1.50111 1.20801 0.88484 0.98302 0.87985 1.22177 1.00522 0.94042 0.99699 1.21558 0.96863 0.92909 0.90048 1.60804 1.32436 1.02930 1.34986 1.20852 1.01495 0.87727 0.92874 1.19841 0.93606 0.99009 0.98360 1.20856 0.96601 0.95291 0.96572 1.21122 0.98600 1.04594 0.98360 1.18953 0.94640 0.91382 0.87505 1.86113 1.29844 1.59203 1.46811 1.23986 0.86072 0.98373 0.98662 1.22040 0.92544 0.81246 0.82215 1.93037 1.94454 1.78581 1.51776 1.93031 1.70461 1.58961 1.95478 1.20442 0.95035 1.00483 1.00584 1.20910 0.99417 0.94778 0.92457 1.22693 0.98497 0.98863 1.00005 1.20808 0.97491 0.86979 0.92507 0.93640 0.96530 0.89392 0.92715 0.92891 0.91271 0.84534 0.90346 0.94573 0.85856 0.85762 0.88917 0.88829 0.85147 0.85145 0.84904 0.92278 0.93701 0.96640 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 11.19 55.49 0.62 -25.66 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 8 H 0.06 1.71 7.89 -52.48 -0.41 1.30 16 9 N -0.59 -14.85 2.99 -172.32 -0.52 -15.36 16 10 C 0.17 4.08 5.30 -3.71 -0.02 4.06 16 11 C -0.12 -2.42 5.69 -26.61 -0.15 -2.57 16 12 C 0.10 1.58 2.43 -67.67 -0.16 1.41 16 13 N -0.68 -9.51 6.24 -107.94 -0.67 -10.18 16 14 C 0.10 1.17 5.61 -4.98 -0.03 1.14 16 15 C -0.11 -1.17 5.39 -104.60 -0.56 -1.74 16 16 C -0.07 -0.73 9.69 -39.61 -0.38 -1.12 16 17 C -0.21 -1.88 9.04 -39.43 -0.36 -2.24 16 18 C 0.12 1.23 6.69 -39.22 -0.26 0.97 16 19 O -0.31 -3.03 10.02 -19.44 -0.19 -3.22 16 20 C 0.01 0.03 4.96 37.16 0.18 0.22 16 21 C 0.27 1.43 5.63 37.16 0.21 1.64 16 22 F -0.20 -1.66 17.28 2.25 0.04 -1.62 16 23 F -0.20 -1.61 17.28 2.25 0.04 -1.58 16 24 C -0.15 -1.55 9.99 -39.43 -0.39 -1.94 16 25 C -0.06 -0.61 9.69 -39.61 -0.38 -0.99 16 26 C -0.16 -2.70 5.33 -26.61 -0.14 -2.85 16 27 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16 28 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 2.37 6.06 -51.93 -0.31 2.05 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.19 7.80 -51.93 -0.40 0.78 16 34 H 0.34 4.59 8.47 -39.29 -0.33 4.26 16 35 H 0.08 0.92 8.00 -51.93 -0.42 0.51 16 36 H 0.04 0.41 7.35 -51.93 -0.38 0.03 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.12 0.78 6.30 -52.48 -0.33 0.45 16 39 H 0.09 0.34 7.66 -51.93 -0.40 -0.06 16 40 H 0.09 0.37 7.66 -51.93 -0.40 -0.03 16 41 H 0.13 0.07 8.14 -51.93 -0.42 -0.35 16 42 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 43 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.04 0.66 7.42 -51.93 -0.39 0.27 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.05 1.07 7.93 -51.93 -0.41 0.65 16 LS Contribution 386.26 15.07 5.82 5.82 Total: -1.00 -32.05 386.26 -9.73 -41.78 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -7.13 Total: 1.35 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -2.71 Total: -8.04 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.57 Total: -51.21 kcal Atomic # 8 Polarization: -3.03 SS G_CDS: -0.19 Total: -3.22 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.08 Total: -3.19 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.05 -9.73 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610270910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.397 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds