Wall clock time and date at job start Sat Apr 11 2020 06:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99797 * 2 1 4 4 H 1.48502 * 109.47190 * 269.99648 * 3 2 1 5 5 H 1.48500 * 109.47411 * 30.00331 * 3 2 1 6 6 H 1.48504 * 109.46716 * 150.00070 * 3 2 1 7 7 C 1.38806 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00161 * 163.06584 * 7 2 1 9 9 N 1.36942 * 119.99970 * 343.06863 * 7 2 1 10 10 C 1.46925 * 120.62905 * 331.83873 * 9 7 2 11 11 C 1.53193 * 108.77060 * 233.63088 * 10 9 7 12 12 C 1.53045 * 109.31274 * 305.36058 * 11 10 9 13 13 N 1.46903 * 109.46119 * 181.38828 * 12 11 10 14 14 C 1.46893 * 110.99870 * 154.97437 * 13 12 11 15 15 C 1.50707 * 109.47013 * 179.97438 * 14 13 12 16 16 C 1.38266 * 119.94568 * 269.73235 * 15 14 13 17 17 C 1.38144 * 120.05044 * 179.72418 * 16 15 14 18 18 C 1.38728 * 119.94551 * 0.56932 * 17 16 15 19 19 O 1.35904 * 120.05188 * 179.68493 * 18 17 16 20 20 C 1.42899 * 117.00445 * 0.02562 * 19 18 17 21 21 C 1.52997 * 109.47131 * 180.02562 * 20 19 18 22 22 F 1.39899 * 109.47166 * 300.00168 * 21 20 19 23 23 F 1.39902 * 109.47419 * 60.00202 * 21 20 19 24 24 C 1.38729 * 119.89283 * 359.70367 * 18 17 16 25 25 C 1.38147 * 119.93822 * 359.97438 * 24 18 17 26 26 C 1.53043 * 109.52427 * 61.37930 * 12 11 10 27 27 C 1.46927 * 120.62679 * 151.85988 * 9 7 2 28 28 H 0.97004 * 119.99730 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.58612 * 113.84467 * 10 9 7 30 30 H 1.08995 * 109.70068 * 353.48522 * 10 9 7 31 31 H 1.09002 * 109.49469 * 185.41793 * 11 10 9 32 32 H 1.08996 * 109.52665 * 65.33568 * 11 10 9 33 33 H 1.08996 * 109.46494 * 301.36426 * 12 11 10 34 34 H 1.00904 * 110.99788 * 278.93429 * 13 12 11 35 35 H 1.09000 * 109.47669 * 299.99865 * 14 13 12 36 36 H 1.09002 * 109.47370 * 60.00846 * 14 13 12 37 37 H 1.07990 * 119.97140 * 359.97271 * 16 15 14 38 38 H 1.08007 * 120.02450 * 180.24340 * 17 16 15 39 39 H 1.08994 * 109.46930 * 300.00598 * 20 19 18 40 40 H 1.08997 * 109.46611 * 60.00441 * 20 19 18 41 41 H 1.09007 * 109.46665 * 180.02562 * 21 20 19 42 42 H 1.07993 * 120.03289 * 179.97438 * 24 18 17 43 43 H 1.08006 * 119.96521 * 180.02562 * 25 24 18 44 44 H 1.08998 * 109.50143 * 58.57638 * 26 12 11 45 45 H 1.08994 * 109.49753 * 178.67885 * 26 12 11 46 46 H 1.09004 * 109.58273 * 246.15604 * 27 9 7 47 47 H 1.08994 * 109.58971 * 6.43535 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2719 9 7 1.3701 -2.3622 0.3464 10 6 0.2263 -2.3397 1.2683 11 6 0.4984 -3.3180 2.4154 12 6 0.8134 -4.6999 1.8381 13 7 1.0423 -5.6485 2.9362 14 6 0.7619 -7.0257 2.5091 15 6 1.0079 -7.9682 3.6592 16 6 2.2592 -8.5289 3.8365 17 6 2.4886 -9.3886 4.8932 18 6 1.4591 -9.6985 5.7699 19 8 1.6807 -10.5490 6.8065 20 6 2.9983 -11.0871 6.9340 21 6 3.0546 -12.0160 8.1484 22 9 2.7318 -11.2946 9.3027 23 9 2.1388 -13.0601 7.9797 24 6 0.2029 -9.1390 5.5866 25 6 -0.0196 -8.2746 4.5321 26 6 2.0687 -4.6163 0.9667 27 6 1.8144 -3.6529 -0.1970 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6767 -2.6411 0.7376 30 1 0.0966 -1.3342 1.6686 31 1 -0.3820 -3.3829 3.0547 32 1 1.3478 -2.9659 3.0007 33 1 -0.0266 -5.0408 1.2330 34 1 1.9813 -5.5654 3.2960 35 1 -0.2779 -7.1032 2.1915 36 1 1.4163 -7.2888 1.6781 37 1 3.0589 -8.2914 3.1507 38 1 3.4673 -9.8233 5.0336 39 1 3.2497 -11.6494 6.0348 40 1 3.7118 -10.2736 7.0651 41 1 4.0599 -12.4261 8.2458 42 1 -0.6002 -9.3789 6.2674 43 1 -0.9973 -7.8385 4.3892 44 1 2.9035 -4.2516 1.5653 45 1 2.3061 -5.6052 0.5748 46 1 1.0407 -4.0613 -0.8473 47 1 2.7335 -3.5130 -0.7659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610270910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:58 Heat of formation + Delta-G solvation = -115.228723 kcal Electronic energy + Delta-G solvation = -28520.760252 eV Core-core repulsion = 24145.880691 eV Total energy + Delta-G solvation = -4374.879561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 3.83 seconds Orbital eigenvalues (eV) -49.91436 -47.97405 -41.17292 -39.74266 -38.69134 -36.50926 -34.14312 -32.53945 -32.02398 -31.58133 -31.08882 -29.82444 -26.91794 -25.44067 -24.78463 -23.77597 -23.18214 -22.85702 -22.02273 -20.83717 -19.61486 -18.77599 -18.48520 -18.00566 -17.83544 -16.97469 -16.64006 -16.56671 -16.46254 -15.98150 -15.68199 -15.40126 -15.30164 -15.20143 -14.84658 -14.72545 -14.41002 -14.35787 -14.34470 -14.18082 -13.92423 -13.56927 -13.33993 -13.17116 -13.08384 -12.96246 -12.60733 -12.47650 -12.33737 -12.06365 -12.01770 -11.96886 -11.89846 -11.77767 -11.71423 -11.40089 -11.14481 -10.53820 -9.94164 -9.31678 -9.04400 -8.67089 -7.86959 -5.32248 0.40282 0.41161 1.46179 1.48096 1.57652 1.95283 2.51598 2.72335 2.82579 3.26873 3.30000 3.43971 3.49403 3.72022 3.84655 3.89712 3.93867 3.98975 4.04954 4.16934 4.19034 4.34602 4.38919 4.41406 4.46147 4.54717 4.62954 4.70623 4.77319 4.81088 4.90100 5.00737 5.08440 5.11084 5.17272 5.27314 5.28950 5.35828 5.36527 5.53511 5.65671 5.71360 5.75884 5.78792 6.15905 6.34560 6.40333 6.53903 7.15713 7.87422 8.39008 9.19506 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.028224 B = 0.001647 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.810079 B =16993.955476 C =17187.400426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.052 4.052 3 Si 0.967 3.033 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.263 4.263 8 H 0.065 0.935 9 N -0.610 5.610 10 C 0.178 3.822 11 C -0.111 4.111 12 C 0.108 3.892 13 N -0.681 5.681 14 C 0.104 3.896 15 C -0.121 4.121 16 C -0.076 4.076 17 C -0.205 4.205 18 C 0.113 3.887 19 O -0.331 6.331 20 C -0.005 4.005 21 C 0.264 3.736 22 F -0.219 7.219 23 F -0.219 7.219 24 C -0.165 4.165 25 C -0.066 4.066 26 C -0.144 4.144 27 C 0.143 3.857 28 H 0.250 0.750 29 H -0.005 1.005 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.342 0.658 35 H 0.076 0.924 36 H 0.047 0.953 37 H 0.141 0.859 38 H 0.155 0.845 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.185 0.815 42 H 0.131 0.869 43 H 0.135 0.865 44 H 0.056 0.944 45 H 0.077 0.923 46 H 0.013 0.987 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.444 -27.092 13.634 31.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.248 4.248 3 Si 0.795 3.205 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.196 1.196 7 C -0.393 4.393 8 H 0.083 0.917 9 N -0.334 5.334 10 C 0.051 3.949 11 C -0.151 4.151 12 C -0.002 4.002 13 N -0.311 5.311 14 C -0.024 4.024 15 C -0.121 4.121 16 C -0.095 4.095 17 C -0.224 4.224 18 C 0.069 3.931 19 O -0.245 6.245 20 C -0.081 4.081 21 C 0.211 3.789 22 F -0.201 7.201 23 F -0.200 7.200 24 C -0.184 4.184 25 C -0.084 4.084 26 C -0.184 4.184 27 C 0.017 3.983 28 H 0.059 0.941 29 H 0.013 0.987 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.161 0.839 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.159 0.841 38 H 0.172 0.828 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.202 0.798 42 H 0.149 0.851 43 H 0.152 0.848 44 H 0.075 0.925 45 H 0.096 0.904 46 H 0.031 0.969 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.556 -26.959 14.077 31.337 hybrid contribution 0.688 1.077 -0.738 1.476 sum 8.244 -25.882 13.340 30.262 Atomic orbital electron populations 1.70189 1.06690 1.25828 1.55408 1.25813 0.96055 1.01552 1.01331 0.85294 0.78076 0.79588 0.77587 1.21060 1.21904 1.19556 1.19498 0.92792 0.86136 1.40911 0.91682 1.44325 1.35950 1.02336 1.50810 1.20582 0.87701 0.97588 0.88997 1.21933 1.00549 0.94811 0.97761 1.21267 0.96640 0.91845 0.90456 1.60665 1.32906 1.03785 1.33732 1.20830 1.01620 0.86371 0.93586 1.19803 0.94348 0.99609 0.98365 1.21093 0.96473 0.94935 0.96950 1.21420 0.99556 1.03972 0.97418 1.19117 0.94828 0.91332 0.87860 1.86087 1.32517 1.59184 1.46709 1.24384 0.84600 0.99262 0.99818 1.22761 0.94210 0.80687 0.81203 1.92989 1.94776 1.79194 1.53127 1.92987 1.71608 1.59881 1.95525 1.20583 0.95781 1.01088 1.00903 1.20992 0.99727 0.95031 0.92668 1.22517 0.98419 0.99223 0.98272 1.20992 0.97164 0.86033 0.94104 0.94127 0.98697 0.92978 0.91978 0.93532 0.91630 0.83947 0.90589 0.93516 0.84148 0.82763 0.86625 0.86872 0.79827 0.85127 0.84757 0.92493 0.90435 0.96935 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.08 11.19 21.65 0.24 -55.84 16 2 C -0.05 -2.95 4.92 84.86 0.42 -2.54 16 3 Si 0.97 45.24 29.59 68.60 2.03 47.27 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.26 -14.63 9.58 84.03 0.81 -13.82 16 8 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16 9 N -0.61 -30.91 2.99 -699.10 -2.09 -33.00 16 10 C 0.18 8.73 5.30 86.36 0.46 9.19 16 11 C -0.11 -4.27 5.69 30.67 0.17 -4.10 16 12 C 0.11 3.39 2.43 44.94 0.11 3.50 16 13 N -0.68 -17.47 6.24 -495.43 -3.09 -20.56 16 14 C 0.10 2.21 5.61 85.56 0.48 2.69 16 15 C -0.12 -2.39 5.39 -19.85 -0.11 -2.50 16 16 C -0.08 -1.27 9.69 22.25 0.22 -1.05 16 17 C -0.21 -3.10 9.04 22.36 0.20 -2.90 16 18 C 0.11 2.16 6.69 22.50 0.15 2.31 16 19 O -0.33 -6.08 10.02 -92.47 -0.93 -7.00 16 20 C -0.01 -0.04 4.96 71.98 0.36 0.31 16 21 C 0.26 2.16 5.63 71.98 0.41 2.57 16 22 F -0.22 -3.43 17.28 44.97 0.78 -2.65 16 23 F -0.22 -3.30 17.28 44.97 0.78 -2.52 16 24 C -0.16 -3.39 9.99 22.37 0.22 -3.17 16 25 C -0.07 -1.34 9.69 22.25 0.22 -1.13 16 26 C -0.14 -4.53 5.33 30.67 0.16 -4.37 16 27 C 0.14 5.85 6.52 86.36 0.56 6.41 16 28 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 29 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.05 2.92 6.06 -2.39 -0.01 2.90 16 31 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.07 2.15 7.80 -2.39 -0.02 2.13 16 34 H 0.34 8.37 8.47 -89.69 -0.76 7.61 16 35 H 0.08 1.65 8.00 -2.39 -0.02 1.63 16 36 H 0.05 0.91 7.35 -2.39 -0.02 0.89 16 37 H 0.14 1.82 8.06 -2.92 -0.02 1.80 16 38 H 0.15 1.29 6.30 -2.91 -0.02 1.27 16 39 H 0.12 0.42 7.66 -2.39 -0.02 0.40 16 40 H 0.11 0.49 7.66 -2.39 -0.02 0.47 16 41 H 0.19 -0.51 8.14 -2.38 -0.02 -0.53 16 42 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 43 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 44 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.08 1.98 7.42 -2.39 -0.02 1.96 16 46 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 Total: -1.00 -71.44 386.26 2.77 -68.67 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.22 Total: 14.23 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 4.83 Total: -8.59 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -4.94 Total: -109.40 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.93 Total: -7.00 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 1.55 Total: -5.17 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -71.44 2.77 -68.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610270910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.556 kcal (2) G-P(sol) polarization free energy of solvation -71.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.83 seconds