Wall clock time and date at job start Sat Apr 11 2020 06:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47211 * 2 1 4 4 C 1.50704 * 109.46958 * 119.99964 * 2 1 3 5 5 N 1.30830 * 125.88984 * 300.03877 * 4 2 1 6 6 N 1.40077 * 108.23904 * 179.97438 * 5 4 2 7 7 C 1.46499 * 126.03585 * 179.97438 * 6 5 4 8 8 C 1.34982 * 107.92715 * 359.77736 * 6 5 4 9 9 Cl 1.73600 * 126.14405 * 180.22762 * 8 6 5 10 10 C 1.35465 * 107.71367 * 0.36051 * 8 6 5 11 11 C 1.50705 * 126.04650 * 179.89598 * 10 8 6 12 12 N 1.46891 * 109.47243 * 269.68990 * 11 10 8 13 13 C 1.46901 * 111.00033 * 180.02562 * 12 11 10 14 14 C 1.53042 * 109.46075 * 275.03349 * 13 12 11 15 15 C 1.53195 * 109.31409 * 178.60140 * 14 13 12 16 16 N 1.46923 * 108.76420 * 54.65268 * 15 14 13 17 17 C 1.36943 * 120.63133 * 126.41021 * 16 15 14 18 18 H 1.07994 * 119.99457 * 331.82615 * 17 16 15 19 19 C 1.38805 * 120.00080 * 151.82313 * 17 16 15 20 20 N 1.31625 * 120.00239 * 343.07279 * 19 17 16 21 21 Si 1.86803 * 119.99873 * 163.06818 * 19 17 16 22 22 H 1.48499 * 109.46990 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46957 * 120.00226 * 21 19 17 24 24 H 1.48500 * 109.47137 * 239.99935 * 21 19 17 25 25 C 1.46927 * 118.73990 * 306.38167 * 16 15 14 26 26 C 1.53037 * 109.46410 * 154.97880 * 13 12 11 27 27 H 1.08995 * 109.47356 * 299.99894 * 1 2 3 28 28 H 1.09005 * 109.47301 * 60.00515 * 1 2 3 29 29 H 1.09006 * 109.47137 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47145 * 239.99789 * 2 1 3 31 31 H 1.08999 * 109.47291 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46568 * 299.99935 * 3 2 1 33 33 H 1.08994 * 109.47063 * 59.99297 * 3 2 1 34 34 H 1.08993 * 109.47412 * 90.02952 * 7 6 5 35 35 H 1.09005 * 109.47066 * 210.02541 * 7 6 5 36 36 H 1.09002 * 109.47431 * 330.02284 * 7 6 5 37 37 H 1.09002 * 109.46835 * 149.69363 * 11 10 8 38 38 H 1.08997 * 109.47292 * 29.69729 * 11 10 8 39 39 H 1.00902 * 110.99806 * 56.05398 * 12 11 10 40 40 H 1.09004 * 109.45768 * 35.00178 * 13 12 11 41 41 H 1.09006 * 109.49829 * 298.56300 * 14 13 12 42 42 H 1.08998 * 109.49983 * 58.65595 * 14 13 12 43 43 H 1.08999 * 109.59310 * 294.86611 * 15 14 13 44 44 H 1.08993 * 109.70268 * 174.50799 * 15 14 13 45 45 H 0.97004 * 119.99770 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.59248 * 293.82734 * 25 16 15 47 47 H 1.09003 * 109.70673 * 173.46409 * 25 16 15 48 48 H 1.09008 * 109.49533 * 301.33949 * 26 13 12 49 49 H 1.09004 * 109.49768 * 61.39572 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7877 -0.3658 2.4687 6 7 2.4326 -1.2783 3.3133 7 6 2.4168 -1.2566 4.7781 8 6 3.0674 -2.1839 2.5394 9 17 4.0094 -3.5296 3.1008 10 6 2.8399 -1.8522 1.2458 11 6 3.3597 -2.5871 0.0372 12 7 4.6592 -2.0261 -0.3556 13 6 5.1974 -2.7193 -1.5337 14 6 5.9480 -3.9760 -1.0871 15 6 6.4778 -4.7148 -2.3201 16 7 7.2845 -3.7824 -3.1192 17 6 8.5669 -4.1008 -3.4790 18 1 9.1540 -4.7606 -2.8575 19 6 9.1120 -3.5756 -4.6425 20 7 8.3258 -3.0569 -5.5619 21 14 10.9615 -3.6050 -4.9035 22 1 11.6169 -4.2377 -3.7307 23 1 11.2764 -4.3856 -6.1268 24 1 11.4613 -2.2155 -5.0607 25 6 6.6891 -2.5021 -3.5255 26 6 6.1566 -1.7885 -2.2790 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.5741 -1.8448 5.1412 35 1 3.3464 -1.6808 5.1578 36 1 2.3185 -0.2280 5.1252 37 1 2.6533 -2.4784 -0.7858 38 1 3.4777 -3.6437 0.2774 39 1 5.3131 -2.0565 0.4122 40 1 4.3780 -3.0014 -2.1948 41 1 6.7827 -3.6928 -0.4459 42 1 5.2703 -4.6280 -0.5359 43 1 5.6408 -5.0776 -2.9166 44 1 7.0953 -5.5566 -2.0070 45 1 8.7069 -2.6896 -6.3748 46 1 5.8693 -2.6845 -4.2203 47 1 7.4449 -1.8816 -4.0070 48 1 5.6274 -0.8830 -2.5763 49 1 6.9890 -1.5254 -1.6262 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730579171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:36 Heat of formation + Delta-G solvation = 79.710835 kcal Electronic energy + Delta-G solvation = -28025.591519 eV Core-core repulsion = 24243.254602 eV Total energy + Delta-G solvation = -3782.336916 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.62384 -38.04663 -37.16930 -36.00447 -35.11272 -32.96726 -32.05712 -30.66324 -29.81731 -28.83545 -27.22461 -27.19952 -25.05924 -23.75255 -22.77596 -22.02914 -21.26230 -20.66102 -19.44092 -19.04789 -17.23869 -16.68014 -16.06900 -15.39780 -15.03086 -14.83128 -14.59504 -14.49124 -14.05471 -13.71298 -13.62232 -13.57831 -13.38459 -13.05824 -12.97814 -12.87734 -12.49229 -12.33977 -12.07245 -12.03021 -11.95363 -11.72618 -11.52885 -11.33682 -11.21888 -11.03190 -10.97580 -10.70847 -10.67622 -10.53902 -10.18154 -10.13591 -9.92583 -9.65496 -9.42984 -9.33237 -8.63274 -8.43790 -7.93501 -6.61118 -5.73955 -3.16086 1.24147 1.41461 2.37229 2.42952 3.40000 3.47815 3.49994 4.08703 4.53739 4.55350 4.66221 4.77424 4.79679 4.93902 5.03831 5.09739 5.13000 5.35865 5.38324 5.44928 5.48524 5.57517 5.60570 5.65987 5.74296 5.76751 5.83555 5.91539 5.94974 5.98778 6.15437 6.18052 6.21615 6.38128 6.39331 6.50116 6.57056 6.68657 6.69992 6.77451 6.92531 7.01232 7.39065 7.43099 7.46691 7.72028 7.76546 7.85091 8.50871 9.27083 9.90632 10.47578 11.34452 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.015524 B = 0.002738 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.219243 B =10222.654926 C =11367.050624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.014 4.014 3 C -0.140 4.140 4 C 0.112 3.888 5 N -0.273 5.273 6 N -0.371 5.371 7 C 0.099 3.901 8 C 0.122 3.878 9 Cl -0.005 7.005 10 C -0.196 4.196 11 C 0.133 3.867 12 N -0.679 5.679 13 C 0.096 3.904 14 C -0.159 4.159 15 C 0.150 3.850 16 N -0.593 5.593 17 C -0.250 4.250 18 H 0.064 0.936 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.171 3.829 26 C -0.124 4.124 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.037 0.963 39 H 0.336 0.664 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.045 0.955 43 H 0.016 0.984 44 H 0.050 0.950 45 H 0.253 0.747 46 H 0.016 0.984 47 H 0.087 0.913 48 H 0.054 0.946 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.853 4.537 18.541 24.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.034 4.034 3 C -0.198 4.198 4 C -0.054 4.054 5 N -0.095 5.095 6 N -0.155 5.155 7 C -0.042 4.042 8 C -0.031 4.031 9 Cl 0.022 6.978 10 C -0.209 4.209 11 C 0.003 3.997 12 N -0.309 5.309 13 C -0.013 4.013 14 C -0.200 4.200 15 C 0.023 3.977 16 N -0.315 5.315 17 C -0.380 4.380 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.045 3.955 26 C -0.163 4.163 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.153 0.847 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.034 0.966 47 H 0.105 0.895 48 H 0.073 0.927 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.574 5.809 19.020 25.889 hybrid contribution 1.790 -1.678 0.096 2.456 sum -14.785 4.131 19.116 24.517 Atomic orbital electron populations 1.21832 0.94067 1.01962 1.02219 1.19660 0.95518 0.95950 0.92316 1.21771 1.01871 0.94290 1.01839 1.22056 0.95961 0.94006 0.93416 1.77440 1.19118 1.12430 1.00545 1.48457 1.39698 1.20616 1.06723 1.21903 1.03578 1.04905 0.73834 1.21509 0.99238 0.91078 0.91317 1.98415 1.69339 1.40416 1.89583 1.19621 1.07786 1.01160 0.92303 1.20194 0.92197 0.94480 0.92821 1.60798 1.03969 1.57324 1.08785 1.21533 0.96393 0.92393 0.90952 1.22686 0.99392 0.98040 0.99893 1.20804 0.94036 0.92279 0.90603 1.44078 1.12002 1.14404 1.61063 1.19210 0.88249 1.27827 1.02700 0.91844 1.25032 0.97937 1.01768 0.94952 1.70047 1.33071 1.44050 1.07509 0.86254 0.85777 0.77357 0.77578 1.20335 1.21792 1.21561 1.20790 0.96720 0.86911 0.91063 1.22165 0.97374 0.97636 0.99168 0.92323 0.91876 0.92705 0.88495 0.91943 0.92027 0.92584 0.90497 0.89443 0.88759 0.90086 0.94481 0.84700 0.91263 0.92362 0.93649 0.96649 0.93109 0.93739 0.96565 0.89491 0.92716 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.17 37.16 0.34 -0.94 16 2 C -0.01 -0.15 3.30 -91.77 -0.30 -0.45 16 3 C -0.14 -1.41 9.18 37.16 0.34 -1.07 16 4 C 0.11 1.37 5.72 -82.41 -0.47 0.90 16 5 N -0.27 -3.41 12.57 33.67 0.42 -2.98 16 6 N -0.37 -4.09 4.01 -64.91 -0.26 -4.35 16 7 C 0.10 0.67 11.31 59.85 0.68 1.35 16 8 C 0.12 1.43 7.45 -17.16 -0.13 1.30 16 9 Cl -0.01 -0.06 28.34 -51.86 -1.47 -1.53 16 10 C -0.20 -2.45 5.62 -105.00 -0.59 -3.04 16 11 C 0.13 1.69 5.46 -4.98 -0.03 1.67 16 12 N -0.68 -9.78 6.24 -107.95 -0.67 -10.45 16 13 C 0.10 1.61 2.43 -67.67 -0.16 1.45 16 14 C -0.16 -2.76 5.33 -26.61 -0.14 -2.91 16 15 C 0.15 3.17 6.52 -3.71 -0.02 3.14 16 16 N -0.59 -14.94 2.99 -172.33 -0.52 -15.46 16 17 C -0.25 -6.93 9.58 -15.06 -0.14 -7.08 16 18 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 19 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 20 N -0.90 -26.35 11.19 55.49 0.62 -25.73 16 21 Si 0.90 21.87 29.59 -169.99 -5.03 16.84 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 C 0.17 4.10 5.30 -3.71 -0.02 4.08 16 26 C -0.12 -2.40 5.69 -26.61 -0.15 -2.55 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 1.04 6.90 -51.92 -0.36 0.69 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.48 7.81 -51.93 -0.41 0.08 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 1.00 7.15 -51.93 -0.37 0.63 16 38 H 0.04 0.48 7.17 -51.93 -0.37 0.10 16 39 H 0.34 4.92 8.47 -39.29 -0.33 4.59 16 40 H 0.07 1.19 7.80 -51.93 -0.40 0.78 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.04 0.70 7.42 -51.93 -0.39 0.31 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 2.35 6.07 -51.93 -0.31 2.03 16 48 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 49 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 401.99 15.07 6.06 6.06 Total: -1.00 -30.61 401.99 -10.14 -40.75 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -8.40 Total: 1.03 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -0.89 Total: -4.19 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.40 Total: -58.97 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.47 Total: -1.53 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.61 -10.14 -40.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730579171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.461 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds