Wall clock time and date at job start Sat Apr 11 2020 06:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47211 * 2 1 4 4 C 1.50704 * 109.46958 * 119.99964 * 2 1 3 5 5 N 1.30830 * 125.88984 * 300.03877 * 4 2 1 6 6 N 1.40077 * 108.23904 * 179.97438 * 5 4 2 7 7 C 1.46499 * 126.03585 * 179.97438 * 6 5 4 8 8 C 1.34982 * 107.92715 * 359.77736 * 6 5 4 9 9 Cl 1.73600 * 126.14405 * 180.22762 * 8 6 5 10 10 C 1.35465 * 107.71367 * 0.36051 * 8 6 5 11 11 C 1.50705 * 126.04650 * 179.89598 * 10 8 6 12 12 N 1.46891 * 109.47243 * 269.68990 * 11 10 8 13 13 C 1.46901 * 111.00033 * 180.02562 * 12 11 10 14 14 C 1.53042 * 109.46075 * 275.03349 * 13 12 11 15 15 C 1.53195 * 109.31409 * 178.60140 * 14 13 12 16 16 N 1.46923 * 108.76420 * 54.65268 * 15 14 13 17 17 C 1.36943 * 120.63133 * 126.41021 * 16 15 14 18 18 H 1.07994 * 119.99457 * 331.82615 * 17 16 15 19 19 C 1.38805 * 120.00080 * 151.82313 * 17 16 15 20 20 N 1.31625 * 120.00239 * 343.07279 * 19 17 16 21 21 Si 1.86803 * 119.99873 * 163.06818 * 19 17 16 22 22 H 1.48499 * 109.46990 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46957 * 120.00226 * 21 19 17 24 24 H 1.48500 * 109.47137 * 239.99935 * 21 19 17 25 25 C 1.46927 * 118.73990 * 306.38167 * 16 15 14 26 26 C 1.53037 * 109.46410 * 154.97880 * 13 12 11 27 27 H 1.08995 * 109.47356 * 299.99894 * 1 2 3 28 28 H 1.09005 * 109.47301 * 60.00515 * 1 2 3 29 29 H 1.09006 * 109.47137 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47145 * 239.99789 * 2 1 3 31 31 H 1.08999 * 109.47291 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46568 * 299.99935 * 3 2 1 33 33 H 1.08994 * 109.47063 * 59.99297 * 3 2 1 34 34 H 1.08993 * 109.47412 * 90.02952 * 7 6 5 35 35 H 1.09005 * 109.47066 * 210.02541 * 7 6 5 36 36 H 1.09002 * 109.47431 * 330.02284 * 7 6 5 37 37 H 1.09002 * 109.46835 * 149.69363 * 11 10 8 38 38 H 1.08997 * 109.47292 * 29.69729 * 11 10 8 39 39 H 1.00902 * 110.99806 * 56.05398 * 12 11 10 40 40 H 1.09004 * 109.45768 * 35.00178 * 13 12 11 41 41 H 1.09006 * 109.49829 * 298.56300 * 14 13 12 42 42 H 1.08998 * 109.49983 * 58.65595 * 14 13 12 43 43 H 1.08999 * 109.59310 * 294.86611 * 15 14 13 44 44 H 1.08993 * 109.70268 * 174.50799 * 15 14 13 45 45 H 0.97004 * 119.99770 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.59248 * 293.82734 * 25 16 15 47 47 H 1.09003 * 109.70673 * 173.46409 * 25 16 15 48 48 H 1.09008 * 109.49533 * 301.33949 * 26 13 12 49 49 H 1.09004 * 109.49768 * 61.39572 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7877 -0.3658 2.4687 6 7 2.4326 -1.2783 3.3133 7 6 2.4168 -1.2566 4.7781 8 6 3.0674 -2.1839 2.5394 9 17 4.0094 -3.5296 3.1008 10 6 2.8399 -1.8522 1.2458 11 6 3.3597 -2.5871 0.0372 12 7 4.6592 -2.0261 -0.3556 13 6 5.1974 -2.7193 -1.5337 14 6 5.9480 -3.9760 -1.0871 15 6 6.4778 -4.7148 -2.3201 16 7 7.2845 -3.7824 -3.1192 17 6 8.5669 -4.1008 -3.4790 18 1 9.1540 -4.7606 -2.8575 19 6 9.1120 -3.5756 -4.6425 20 7 8.3258 -3.0569 -5.5619 21 14 10.9615 -3.6050 -4.9035 22 1 11.6169 -4.2377 -3.7307 23 1 11.2764 -4.3856 -6.1268 24 1 11.4613 -2.2155 -5.0607 25 6 6.6891 -2.5021 -3.5255 26 6 6.1566 -1.7885 -2.2790 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.5741 -1.8448 5.1412 35 1 3.3464 -1.6808 5.1578 36 1 2.3185 -0.2280 5.1252 37 1 2.6533 -2.4784 -0.7858 38 1 3.4777 -3.6437 0.2774 39 1 5.3131 -2.0565 0.4122 40 1 4.3780 -3.0014 -2.1948 41 1 6.7827 -3.6928 -0.4459 42 1 5.2703 -4.6280 -0.5359 43 1 5.6408 -5.0776 -2.9166 44 1 7.0953 -5.5566 -2.0070 45 1 8.7069 -2.6896 -6.3748 46 1 5.8693 -2.6845 -4.2203 47 1 7.4449 -1.8816 -4.0070 48 1 5.6274 -0.8830 -2.5763 49 1 6.9890 -1.5254 -1.6262 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730579171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:35 Heat of formation + Delta-G solvation = 61.935668 kcal Electronic energy + Delta-G solvation = -28026.362308 eV Core-core repulsion = 24243.254602 eV Total energy + Delta-G solvation = -3783.107705 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.47775 -39.58861 -37.99894 -37.00091 -36.43365 -34.32016 -33.28171 -32.09559 -31.42264 -30.20430 -28.14167 -27.94476 -26.63587 -25.09800 -23.69862 -23.56085 -22.88876 -21.58249 -20.85162 -20.11438 -18.75608 -17.93484 -16.95624 -16.82250 -16.34417 -16.04637 -15.75872 -15.53912 -15.31001 -15.19273 -15.06557 -14.68675 -14.55568 -14.30532 -14.07626 -13.82957 -13.64735 -13.42811 -13.22041 -13.09465 -12.98584 -12.86137 -12.74260 -12.59910 -12.53533 -12.42341 -12.38285 -11.99112 -11.94392 -11.88568 -11.80567 -11.74892 -11.41580 -11.32416 -11.13792 -10.52505 -10.16185 -9.55660 -9.13813 -8.64765 -7.84998 -5.30145 0.39668 0.55356 1.46605 1.48582 1.52083 1.58919 1.65191 2.52789 3.25507 3.31312 3.49904 3.74916 3.80315 3.95866 4.05139 4.11829 4.19865 4.30919 4.33727 4.35262 4.45684 4.53860 4.57772 4.59599 4.63112 4.71123 4.79354 4.86528 4.89215 4.93659 5.02863 5.04358 5.07630 5.13545 5.19468 5.21846 5.33559 5.36757 5.38541 5.43000 5.55890 5.56724 5.68456 5.73281 5.79454 6.21046 6.42525 6.51876 6.54302 7.18044 7.89764 8.41169 9.21340 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.015524 B = 0.002738 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.219243 B =10222.654926 C =11367.050624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.016 4.016 3 C -0.134 4.134 4 C 0.104 3.896 5 N -0.291 5.291 6 N -0.370 5.370 7 C 0.088 3.912 8 C 0.121 3.879 9 Cl 0.006 6.994 10 C -0.215 4.215 11 C 0.140 3.860 12 N -0.674 5.674 13 C 0.109 3.891 14 C -0.144 4.144 15 C 0.145 3.855 16 N -0.611 5.611 17 C -0.262 4.262 18 H 0.063 0.937 19 C -0.051 4.051 20 N -0.933 5.933 21 Si 0.965 3.035 22 H -0.268 1.268 23 H -0.292 1.292 24 H -0.290 1.290 25 C 0.179 3.821 26 C -0.109 4.109 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.040 0.960 39 H 0.337 0.663 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.014 0.986 44 H 0.049 0.951 45 H 0.250 0.750 46 H -0.003 1.003 47 H 0.051 0.949 48 H 0.065 0.935 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.510 4.387 20.401 26.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.036 4.036 3 C -0.192 4.192 4 C -0.061 4.061 5 N -0.114 5.114 6 N -0.154 5.154 7 C -0.051 4.051 8 C -0.034 4.034 9 Cl 0.034 6.966 10 C -0.228 4.228 11 C 0.010 3.990 12 N -0.304 5.304 13 C 0.000 4.000 14 C -0.184 4.184 15 C 0.019 3.981 16 N -0.335 5.335 17 C -0.392 4.392 18 H 0.081 0.919 19 C -0.246 4.246 20 N -0.580 5.580 21 Si 0.793 3.207 22 H -0.192 1.192 23 H -0.219 1.219 24 H -0.216 1.216 25 C 0.053 3.947 26 C -0.149 4.149 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.154 0.846 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.032 0.968 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.015 0.985 47 H 0.070 0.930 48 H 0.084 0.916 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.254 5.654 20.930 27.708 hybrid contribution 1.952 -1.674 -0.400 2.603 sum -15.302 3.980 20.530 25.913 Atomic orbital electron populations 1.21776 0.92895 1.02033 1.02711 1.19719 0.96479 0.95808 0.91596 1.21717 1.00730 0.94337 1.02422 1.22306 0.95914 0.94065 0.93851 1.77397 1.19887 1.13230 1.00873 1.48796 1.38780 1.19867 1.07966 1.22252 1.05051 1.06124 0.71683 1.21621 0.99000 0.91337 0.91412 1.98418 1.68962 1.39740 1.89436 1.19625 1.08839 1.01806 0.92514 1.20143 0.91052 0.94537 0.93261 1.60685 1.04598 1.57010 1.08082 1.21259 0.95612 0.91445 0.91716 1.22514 0.99658 0.98259 0.98012 1.20962 0.93509 0.92134 0.91479 1.44339 1.11979 1.15597 1.61543 1.19516 0.89610 1.27474 1.02586 0.91887 1.25780 1.01962 1.02012 0.94862 1.70192 1.34690 1.45210 1.07877 0.85246 0.80871 0.77062 0.77499 1.19228 1.21874 1.21648 1.20572 0.94930 0.86579 0.92585 1.21917 0.97719 0.98075 0.97143 0.92783 0.90385 0.92832 0.88840 0.93557 0.90574 0.92849 0.88866 0.88080 0.87761 0.89717 0.94141 0.84569 0.91213 0.92853 0.90850 0.96765 0.93227 0.94127 0.98520 0.93046 0.91645 0.93831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.17 71.98 0.66 -1.58 16 2 C -0.02 -0.31 3.30 -11.54 -0.04 -0.35 16 3 C -0.13 -2.57 9.18 71.98 0.66 -1.91 16 4 C 0.10 2.43 5.72 43.10 0.25 2.67 16 5 N -0.29 -6.87 12.57 -47.39 -0.60 -7.47 16 6 N -0.37 -7.49 4.01 -359.27 -1.44 -8.93 16 7 C 0.09 1.01 11.31 127.77 1.44 2.45 16 8 C 0.12 2.60 7.45 83.57 0.62 3.22 16 9 Cl 0.01 0.12 28.34 -2.72 -0.08 0.04 16 10 C -0.21 -5.02 5.62 -20.11 -0.11 -5.13 16 11 C 0.14 3.28 5.46 85.56 0.47 3.75 16 12 N -0.67 -18.19 6.24 -495.45 -3.09 -21.28 16 13 C 0.11 3.50 2.43 44.94 0.11 3.61 16 14 C -0.14 -4.73 5.33 30.67 0.16 -4.56 16 15 C 0.15 6.04 6.52 86.36 0.56 6.60 16 16 N -0.61 -31.11 2.99 -699.12 -2.09 -33.20 16 17 C -0.26 -14.64 9.58 84.03 0.81 -13.83 16 18 H 0.06 3.46 7.88 -2.91 -0.02 3.44 16 19 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 20 N -0.93 -55.90 11.19 21.65 0.24 -55.66 16 21 Si 0.96 45.49 29.59 68.60 2.03 47.51 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 25 C 0.18 8.79 5.30 86.36 0.46 9.25 16 26 C -0.11 -4.19 5.69 30.67 0.17 -4.01 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.09 1.90 6.90 -2.38 -0.02 1.88 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.10 0.87 7.81 -2.38 -0.02 0.85 16 36 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.94 7.15 -2.39 -0.02 1.92 16 38 H 0.04 0.93 7.17 -2.39 -0.02 0.92 16 39 H 0.34 9.18 8.47 -89.69 -0.76 8.42 16 40 H 0.07 2.27 7.80 -2.38 -0.02 2.26 16 41 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.07 2.03 7.42 -2.39 -0.02 2.02 16 43 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 45 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 46 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 47 H 0.05 2.87 6.07 -2.39 -0.01 2.86 16 48 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 49 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -66.07 401.99 1.79 -64.28 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.18 Total: 16.99 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 6.64 Total: -2.30 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -6.98 Total: -126.54 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Atomic # 17 Polarization: 0.12 SS G_CDS: -0.08 Total: 0.04 kcal Total: -66.07 1.79 -64.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730579171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.218 kcal (2) G-P(sol) polarization free energy of solvation -66.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds