Wall clock time and date at job start Sat Apr 11 2020 06:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47024 * 2 1 4 4 C 1.53008 * 110.53344 * 177.87135 * 3 2 1 5 5 C 1.53000 * 109.46865 * 187.12897 * 4 3 2 6 6 N 1.47310 * 110.59875 * 54.87951 * 3 2 1 7 7 C 1.34528 * 106.61692 * 241.47095 * 6 3 2 8 8 O 1.21541 * 123.77280 * 180.02562 * 7 6 3 9 9 N 1.33789 * 112.45914 * 359.74602 * 7 6 3 10 10 C 1.46495 * 124.18139 * 180.30553 * 9 7 6 11 11 C 1.50703 * 109.47161 * 270.14714 * 10 9 7 12 12 O 1.20820 * 120.00223 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99907 * 179.97438 * 11 10 9 14 14 C 1.45200 * 117.00059 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47126 * 180.02562 * 14 13 11 16 16 C 1.52994 * 109.47242 * 299.99909 * 15 14 13 17 17 C 1.52993 * 109.47268 * 60.00170 * 15 14 13 18 18 C 1.50705 * 109.46767 * 180.02562 * 15 14 13 19 19 H 1.08002 * 120.00026 * 1.36264 * 18 15 14 20 20 C 1.37880 * 119.99640 * 181.36275 * 18 15 14 21 21 N 1.31514 * 119.99867 * 193.96642 * 20 18 15 22 22 Si 1.86792 * 120.00110 * 13.95869 * 20 18 15 23 23 H 1.48501 * 109.47378 * 84.55941 * 22 20 18 24 24 H 1.48501 * 109.47143 * 204.55741 * 22 20 18 25 25 H 1.48502 * 109.47656 * 324.55892 * 22 20 18 26 26 C 1.34768 * 111.64322 * 0.43567 * 9 7 6 27 27 O 1.21238 * 127.16026 * 179.84574 * 26 9 7 28 28 H 1.09005 * 109.46841 * 299.99537 * 1 2 3 29 29 H 1.08991 * 109.47158 * 59.99768 * 1 2 3 30 30 H 1.08998 * 109.47134 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47105 * 240.00032 * 2 1 3 32 32 H 1.08998 * 109.47356 * 120.00543 * 2 1 3 33 33 H 1.08998 * 109.47021 * 307.13145 * 4 3 2 34 34 H 1.09004 * 109.46985 * 67.13042 * 4 3 2 35 35 H 1.08992 * 109.46856 * 60.00497 * 5 4 3 36 36 H 1.09004 * 109.46439 * 180.02562 * 5 4 3 37 37 H 1.08998 * 109.47504 * 299.99953 * 5 4 3 38 38 H 0.96996 * 126.69080 * 61.49356 * 6 3 2 39 39 H 1.08999 * 109.47529 * 30.14956 * 10 9 7 40 40 H 1.09009 * 109.47261 * 150.14829 * 10 9 7 41 41 H 1.09000 * 109.46979 * 300.00388 * 14 13 11 42 42 H 1.09003 * 109.47241 * 60.00335 * 14 13 11 43 43 H 1.08997 * 109.47087 * 69.31640 * 16 15 14 44 44 H 1.08996 * 109.47279 * 189.31816 * 16 15 14 45 45 H 1.09000 * 109.47551 * 309.31795 * 16 15 14 46 46 H 1.09007 * 109.47354 * 59.99930 * 17 15 14 47 47 H 1.09000 * 109.47617 * 179.97438 * 17 15 14 48 48 H 1.09002 * 109.47545 * 299.99815 * 17 15 14 49 49 H 0.96996 * 119.99946 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5688 1.4712 0.0532 5 6 4.0459 2.9140 0.2312 6 7 1.4648 2.1955 1.1279 7 6 0.7507 3.2028 0.5937 8 8 0.1409 4.0222 1.2524 9 7 0.7919 3.2054 -0.7436 10 6 0.1110 4.1916 -1.5860 11 6 -1.2777 3.7032 -1.9090 12 8 -1.6596 2.6406 -1.4792 13 8 -2.0906 4.4493 -2.6734 14 6 -3.4142 3.9167 -2.9431 15 6 -4.1894 4.8987 -3.8238 16 6 -4.3174 6.2408 -3.1005 17 6 -3.4420 5.0999 -5.1435 18 6 -5.5634 4.3462 -4.1032 19 1 -5.8623 3.4006 -3.6755 20 6 -6.4387 5.0479 -4.9048 21 7 -7.7122 4.7207 -4.9315 22 14 -5.8157 6.4633 -5.9525 23 1 -5.2782 5.9334 -7.2314 24 1 -6.9335 7.3991 -6.2354 25 1 -4.7402 7.1827 -5.2238 26 6 1.5348 2.1869 -1.2200 27 8 1.7569 1.9236 -2.3824 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.9145 0.8680 0.8927 34 1 3.9724 1.0670 -0.8752 35 1 3.6424 3.3181 1.1596 36 1 5.1351 2.9344 0.2687 37 1 3.7002 3.5172 -0.6082 38 1 1.5789 2.0029 2.0716 39 1 0.0477 5.1414 -1.0549 40 1 0.6720 4.3290 -2.5105 41 1 -3.3230 2.9607 -3.4587 42 1 -3.9466 3.7730 -2.0029 43 1 -3.3392 6.7184 -3.0449 44 1 -5.0054 6.8847 -3.6484 45 1 -4.6988 6.0757 -2.0929 46 1 -3.3508 4.1436 -5.6588 47 1 -3.9944 5.7991 -5.7711 48 1 -2.4483 5.4997 -4.9411 49 1 -8.3279 5.2141 -5.4957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764834096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:51 Heat of formation + Delta-G solvation = -117.505090 kcal Electronic energy + Delta-G solvation = -31641.719492 eV Core-core repulsion = 27377.828736 eV Total energy + Delta-G solvation = -4263.890756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.08286 -40.10257 -38.91959 -37.48280 -36.88963 -35.63881 -35.08717 -32.83415 -32.71728 -31.75171 -29.50670 -27.28556 -26.35318 -26.12674 -24.91814 -24.11705 -22.63131 -22.57278 -21.00945 -20.35797 -19.18516 -18.24509 -18.05514 -16.91400 -16.68092 -16.26499 -16.14029 -15.97658 -15.92308 -15.35241 -15.20039 -14.95161 -14.50242 -14.32423 -14.10944 -13.80786 -13.70200 -13.29969 -13.26978 -12.91478 -12.53395 -12.35562 -12.22042 -12.09432 -12.00973 -11.92532 -11.80715 -11.63262 -11.56867 -11.37595 -11.03427 -10.82931 -10.46007 -10.39428 -10.35500 -10.28884 -10.06981 -9.91771 -9.78043 -9.74249 -9.11208 -8.65780 -8.47369 -6.16570 -4.15071 1.34767 1.71784 2.34976 2.59824 2.76702 3.17456 3.27336 3.35749 3.40695 3.52925 3.88853 4.21449 4.36370 4.57884 4.64383 4.78615 4.82756 4.84179 4.92577 4.95408 5.13612 5.15778 5.17859 5.28359 5.31401 5.37641 5.48369 5.62077 5.68837 5.73709 5.75499 5.88019 6.08190 6.11928 6.24092 6.45190 6.52145 6.57431 6.69046 6.70702 6.77657 6.83136 6.98809 7.06031 7.21469 7.43774 7.68528 7.82710 7.99796 8.40827 8.85645 9.46726 10.96200 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023248 B = 0.002693 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.090483 B =10396.752521 C =10562.923686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.116 4.116 3 C 0.124 3.876 4 C -0.117 4.117 5 C -0.159 4.159 6 N -0.715 5.715 7 C 0.711 3.289 8 O -0.537 6.537 9 N -0.564 5.564 10 C 0.124 3.876 11 C 0.444 3.556 12 O -0.504 6.504 13 O -0.348 6.348 14 C 0.095 3.905 15 C 0.043 3.957 16 C -0.140 4.140 17 C -0.146 4.146 18 C -0.520 4.520 19 H 0.075 0.925 20 C 0.079 3.921 21 N -0.890 5.890 22 Si 0.885 3.115 23 H -0.284 1.284 24 H -0.304 1.304 25 H -0.246 1.246 26 C 0.539 3.461 27 O -0.459 6.459 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.439 0.561 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.032 0.968 44 H 0.055 0.945 45 H 0.043 0.957 46 H 0.049 0.951 47 H 0.040 0.960 48 H 0.041 0.959 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.085 -5.833 11.651 29.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.154 4.154 3 C 0.034 3.966 4 C -0.156 4.156 5 C -0.216 4.216 6 N -0.379 5.379 7 C 0.412 3.588 8 O -0.410 6.410 9 N -0.311 5.311 10 C 0.001 3.999 11 C 0.284 3.716 12 O -0.392 6.392 13 O -0.264 6.264 14 C 0.023 3.977 15 C 0.042 3.958 16 C -0.198 4.198 17 C -0.203 4.203 18 C -0.557 4.557 19 H 0.094 0.906 20 C -0.124 4.124 21 N -0.526 5.526 22 Si 0.717 3.283 23 H -0.212 1.212 24 H -0.233 1.233 25 H -0.171 1.171 26 C 0.326 3.674 27 O -0.327 6.327 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.284 0.716 39 H 0.157 0.843 40 H 0.154 0.846 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.051 0.949 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.060 0.940 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 25.462 -5.748 11.318 28.451 hybrid contribution -0.063 0.440 -0.271 0.521 sum 25.399 -5.308 11.047 28.202 Atomic orbital electron populations 1.21857 0.93819 1.02804 1.03432 1.21783 0.97744 0.91596 1.04321 1.21633 0.96219 0.94349 0.84441 1.21783 0.90059 0.99120 1.04624 1.21831 1.01928 0.95484 1.02371 1.45512 1.53463 1.29940 1.09029 1.15707 0.79573 0.82271 0.81252 1.91047 1.46000 1.41045 1.62861 1.45944 1.47567 1.29568 1.07972 1.21021 0.89087 0.92168 0.97605 1.23520 0.88101 0.83436 0.76505 1.90649 1.75785 1.22812 1.49962 1.86454 1.28052 1.49447 1.62424 1.23475 0.76162 0.98010 1.00076 1.18594 0.94190 0.92154 0.90816 1.22230 0.99267 0.98128 1.00141 1.22296 0.98556 1.00545 0.98926 1.20655 0.94775 1.08301 1.31971 0.90645 1.24911 0.94260 0.96790 0.96477 1.69942 1.02346 1.41716 1.38637 0.87280 0.77341 0.82733 0.80907 1.21207 1.23310 1.17144 1.20741 0.76866 0.79551 0.90248 1.90815 1.56819 1.67206 1.17827 0.92163 0.91620 0.91644 0.89298 0.89675 0.89455 0.89142 0.91888 0.91429 0.92907 0.71608 0.84349 0.84597 0.91692 0.91546 0.94865 0.92662 0.93742 0.93162 0.94132 0.94034 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.38 37.16 0.35 -1.29 16 2 C -0.12 -0.80 5.35 -26.73 -0.14 -0.95 16 3 C 0.12 0.94 0.86 -132.09 -0.11 0.83 16 4 C -0.12 -0.59 5.34 -26.73 -0.14 -0.73 16 5 C -0.16 -0.87 9.37 37.16 0.35 -0.53 16 6 N -0.72 -5.63 3.96 -52.94 -0.21 -5.84 16 7 C 0.71 8.56 8.41 -88.02 -0.74 7.82 16 8 O -0.54 -8.30 17.48 5.33 0.09 -8.21 16 9 N -0.56 -6.77 2.09 -122.02 -0.26 -7.03 16 10 C 0.12 1.51 6.29 -5.19 -0.03 1.47 16 11 C 0.44 7.41 8.03 36.01 0.29 7.70 16 12 O -0.50 -9.67 15.51 -18.75 -0.29 -9.96 16 13 O -0.35 -6.38 9.06 -39.25 -0.36 -6.74 16 14 C 0.10 2.02 4.25 37.16 0.16 2.17 16 15 C 0.04 1.00 0.58 -155.66 -0.09 0.91 16 16 C -0.14 -3.08 7.58 37.15 0.28 -2.80 16 17 C -0.15 -3.18 7.55 37.15 0.28 -2.90 16 18 C -0.52 -14.34 8.62 -34.44 -0.30 -14.63 16 19 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 20 C 0.08 2.23 5.32 -17.82 -0.09 2.13 16 21 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 22 Si 0.89 21.58 22.79 -169.99 -3.87 17.71 16 23 H -0.28 -6.87 7.10 56.52 0.40 -6.47 16 24 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 25 H -0.25 -5.53 4.65 56.52 0.26 -5.27 16 26 C 0.54 6.09 4.79 -10.56 -0.05 6.04 16 27 O -0.46 -6.23 17.76 5.59 0.10 -6.13 16 28 H 0.06 0.64 7.53 -51.93 -0.39 0.25 16 29 H 0.06 0.90 6.58 -51.93 -0.34 0.56 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.36 7.43 -51.93 -0.39 -0.03 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.05 0.37 7.42 -51.93 -0.39 -0.02 16 38 H 0.44 2.31 8.96 -40.82 -0.37 1.94 16 39 H 0.14 1.43 7.86 -51.93 -0.41 1.02 16 40 H 0.14 1.32 8.00 -51.92 -0.42 0.90 16 41 H 0.06 1.40 8.13 -51.93 -0.42 0.97 16 42 H 0.07 1.45 8.13 -51.93 -0.42 1.03 16 43 H 0.03 0.64 7.94 -51.93 -0.41 0.23 16 44 H 0.05 1.26 4.30 -51.93 -0.22 1.03 16 45 H 0.04 0.95 8.12 -51.93 -0.42 0.53 16 46 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 47 H 0.04 0.91 2.25 -51.93 -0.12 0.80 16 48 H 0.04 0.79 7.68 -51.93 -0.40 0.39 16 49 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 386.81 15.07 5.83 5.83 Total: -1.00 -34.84 386.81 -5.95 -40.79 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.76 Total: 0.45 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 0.00 Total: 5.27 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.31 Total: -39.01 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.45 Total: -31.03 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -3.87 Total: 17.71 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.84 -5.95 -40.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764834096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.717 kcal (2) G-P(sol) polarization free energy of solvation -34.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds