Wall clock time and date at job start Sat Apr 11 2020 06:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47024 * 2 1 4 4 C 1.53008 * 110.53344 * 177.87135 * 3 2 1 5 5 C 1.53000 * 109.46865 * 187.12897 * 4 3 2 6 6 N 1.47310 * 110.59875 * 54.87951 * 3 2 1 7 7 C 1.34528 * 106.61692 * 241.47095 * 6 3 2 8 8 O 1.21541 * 123.77280 * 180.02562 * 7 6 3 9 9 N 1.33789 * 112.45914 * 359.74602 * 7 6 3 10 10 C 1.46495 * 124.18139 * 180.30553 * 9 7 6 11 11 C 1.50703 * 109.47161 * 270.14714 * 10 9 7 12 12 O 1.20820 * 120.00223 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99907 * 179.97438 * 11 10 9 14 14 C 1.45200 * 117.00059 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47126 * 180.02562 * 14 13 11 16 16 C 1.52994 * 109.47242 * 299.99909 * 15 14 13 17 17 C 1.52993 * 109.47268 * 60.00170 * 15 14 13 18 18 C 1.50705 * 109.46767 * 180.02562 * 15 14 13 19 19 H 1.08002 * 120.00026 * 1.36264 * 18 15 14 20 20 C 1.37880 * 119.99640 * 181.36275 * 18 15 14 21 21 N 1.31514 * 119.99867 * 193.96642 * 20 18 15 22 22 Si 1.86792 * 120.00110 * 13.95869 * 20 18 15 23 23 H 1.48501 * 109.47378 * 84.55941 * 22 20 18 24 24 H 1.48501 * 109.47143 * 204.55741 * 22 20 18 25 25 H 1.48502 * 109.47656 * 324.55892 * 22 20 18 26 26 C 1.34768 * 111.64322 * 0.43567 * 9 7 6 27 27 O 1.21238 * 127.16026 * 179.84574 * 26 9 7 28 28 H 1.09005 * 109.46841 * 299.99537 * 1 2 3 29 29 H 1.08991 * 109.47158 * 59.99768 * 1 2 3 30 30 H 1.08998 * 109.47134 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47105 * 240.00032 * 2 1 3 32 32 H 1.08998 * 109.47356 * 120.00543 * 2 1 3 33 33 H 1.08998 * 109.47021 * 307.13145 * 4 3 2 34 34 H 1.09004 * 109.46985 * 67.13042 * 4 3 2 35 35 H 1.08992 * 109.46856 * 60.00497 * 5 4 3 36 36 H 1.09004 * 109.46439 * 180.02562 * 5 4 3 37 37 H 1.08998 * 109.47504 * 299.99953 * 5 4 3 38 38 H 0.96996 * 126.69080 * 61.49356 * 6 3 2 39 39 H 1.08999 * 109.47529 * 30.14956 * 10 9 7 40 40 H 1.09009 * 109.47261 * 150.14829 * 10 9 7 41 41 H 1.09000 * 109.46979 * 300.00388 * 14 13 11 42 42 H 1.09003 * 109.47241 * 60.00335 * 14 13 11 43 43 H 1.08997 * 109.47087 * 69.31640 * 16 15 14 44 44 H 1.08996 * 109.47279 * 189.31816 * 16 15 14 45 45 H 1.09000 * 109.47551 * 309.31795 * 16 15 14 46 46 H 1.09007 * 109.47354 * 59.99930 * 17 15 14 47 47 H 1.09000 * 109.47617 * 179.97438 * 17 15 14 48 48 H 1.09002 * 109.47545 * 299.99815 * 17 15 14 49 49 H 0.96996 * 119.99946 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5688 1.4712 0.0532 5 6 4.0459 2.9140 0.2312 6 7 1.4648 2.1955 1.1279 7 6 0.7507 3.2028 0.5937 8 8 0.1409 4.0222 1.2524 9 7 0.7919 3.2054 -0.7436 10 6 0.1110 4.1916 -1.5860 11 6 -1.2777 3.7032 -1.9090 12 8 -1.6596 2.6406 -1.4792 13 8 -2.0906 4.4493 -2.6734 14 6 -3.4142 3.9167 -2.9431 15 6 -4.1894 4.8987 -3.8238 16 6 -4.3174 6.2408 -3.1005 17 6 -3.4420 5.0999 -5.1435 18 6 -5.5634 4.3462 -4.1032 19 1 -5.8623 3.4006 -3.6755 20 6 -6.4387 5.0479 -4.9048 21 7 -7.7122 4.7207 -4.9315 22 14 -5.8157 6.4633 -5.9525 23 1 -5.2782 5.9334 -7.2314 24 1 -6.9335 7.3991 -6.2354 25 1 -4.7402 7.1827 -5.2238 26 6 1.5348 2.1869 -1.2200 27 8 1.7569 1.9236 -2.3824 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.9145 0.8680 0.8927 34 1 3.9724 1.0670 -0.8752 35 1 3.6424 3.3181 1.1596 36 1 5.1351 2.9344 0.2687 37 1 3.7002 3.5172 -0.6082 38 1 1.5789 2.0029 2.0716 39 1 0.0477 5.1414 -1.0549 40 1 0.6720 4.3290 -2.5105 41 1 -3.3230 2.9607 -3.4587 42 1 -3.9466 3.7730 -2.0029 43 1 -3.3392 6.7184 -3.0449 44 1 -5.0054 6.8847 -3.6484 45 1 -4.6988 6.0757 -2.0929 46 1 -3.3508 4.1436 -5.6588 47 1 -3.9944 5.7991 -5.7711 48 1 -2.4483 5.4997 -4.9411 49 1 -8.3279 5.2141 -5.4957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764834096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:50 Heat of formation + Delta-G solvation = -141.468455 kcal Electronic energy + Delta-G solvation = -31642.758622 eV Core-core repulsion = 27377.828736 eV Total energy + Delta-G solvation = -4264.929886 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.93121 -41.53311 -39.86932 -38.74359 -38.08291 -36.90335 -36.50837 -33.89787 -33.50658 -33.30570 -30.57667 -28.13118 -28.00488 -27.68064 -27.01984 -24.96235 -23.71563 -23.10653 -21.99204 -21.29764 -21.03679 -19.29059 -19.12521 -18.14761 -17.98382 -17.73223 -17.54033 -17.15473 -16.99640 -16.87469 -16.44268 -15.71008 -15.36485 -15.26322 -15.04750 -14.93462 -14.86444 -14.76052 -14.54050 -14.16431 -13.84352 -13.81509 -13.74368 -13.72760 -13.20570 -12.75968 -12.67401 -12.51203 -12.45879 -12.33750 -12.18687 -12.03054 -11.99290 -11.93577 -11.89524 -11.84679 -11.53232 -11.26457 -11.16044 -11.04189 -10.65690 -10.49411 -10.43260 -8.36246 -6.39433 0.47559 0.79977 1.00775 1.35480 1.36935 1.49358 1.53012 2.01163 2.08996 2.31253 2.77768 2.99800 3.29793 3.49469 3.65182 3.73245 3.97982 4.04836 4.07541 4.13046 4.20018 4.26126 4.27847 4.34803 4.38110 4.48358 4.53232 4.68290 4.76295 4.76845 4.80603 4.91334 4.93944 4.99930 5.04415 5.08219 5.09713 5.12270 5.24822 5.30666 5.40192 5.42436 5.63351 5.70398 5.74989 5.85656 6.21190 6.22378 6.54984 6.63748 7.00398 7.25966 8.80591 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023248 B = 0.002693 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.090483 B =10396.752521 C =10562.923686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.110 4.110 3 C 0.130 3.870 4 C -0.110 4.110 5 C -0.160 4.160 6 N -0.693 5.693 7 C 0.707 3.293 8 O -0.577 6.577 9 N -0.570 5.570 10 C 0.127 3.873 11 C 0.438 3.562 12 O -0.534 6.534 13 O -0.342 6.342 14 C 0.108 3.892 15 C 0.039 3.961 16 C -0.138 4.138 17 C -0.145 4.145 18 C -0.526 4.526 19 H 0.030 0.970 20 C 0.023 3.977 21 N -0.942 5.942 22 Si 0.943 3.057 23 H -0.277 1.277 24 H -0.310 1.310 25 H -0.208 1.208 26 C 0.531 3.469 27 O -0.486 6.486 28 H 0.050 0.950 29 H 0.023 0.977 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.033 0.967 38 H 0.453 0.547 39 H 0.160 0.840 40 H 0.164 0.836 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.047 0.953 45 H 0.038 0.962 46 H 0.046 0.954 47 H 0.037 0.963 48 H 0.074 0.926 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.144 -5.233 12.277 32.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.148 4.148 3 C 0.040 3.960 4 C -0.148 4.148 5 C -0.217 4.217 6 N -0.358 5.358 7 C 0.407 3.593 8 O -0.453 6.453 9 N -0.316 5.316 10 C 0.004 3.996 11 C 0.281 3.719 12 O -0.423 6.423 13 O -0.257 6.257 14 C 0.034 3.966 15 C 0.038 3.962 16 C -0.195 4.195 17 C -0.201 4.201 18 C -0.564 4.564 19 H 0.048 0.952 20 C -0.175 4.175 21 N -0.580 5.580 22 Si 0.772 3.228 23 H -0.205 1.205 24 H -0.239 1.239 25 H -0.132 1.132 26 C 0.320 3.680 27 O -0.356 6.356 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.052 0.948 38 H 0.301 0.699 39 H 0.178 0.822 40 H 0.182 0.818 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.055 0.945 48 H 0.093 0.907 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 29.586 -5.183 11.980 32.337 hybrid contribution -1.335 0.096 -0.378 1.390 sum 28.251 -5.086 11.602 30.962 Atomic orbital electron populations 1.21826 0.96519 1.02616 1.00869 1.21844 0.95075 0.91267 1.06623 1.21825 0.98077 0.93914 0.82173 1.21850 0.87222 0.99396 1.06360 1.21850 1.02964 0.95507 1.01420 1.45449 1.51975 1.28413 1.09937 1.15882 0.79612 0.82644 0.81124 1.91017 1.47897 1.42817 1.63560 1.46101 1.47403 1.29924 1.08164 1.21253 0.86221 0.92786 0.99328 1.24544 0.89254 0.82871 0.75232 1.90649 1.76561 1.24188 1.50927 1.86430 1.26736 1.49426 1.63133 1.22990 0.77704 0.97110 0.98755 1.18533 0.92164 0.92997 0.92506 1.22170 1.00827 0.97085 0.99468 1.22242 0.99889 1.00634 0.97375 1.20921 0.97378 1.06738 1.31324 0.95173 1.25783 0.94100 0.99975 0.97645 1.70086 1.03990 1.43853 1.40109 0.86333 0.77639 0.79536 0.79340 1.20453 1.23886 1.13228 1.21442 0.76239 0.79303 0.91019 1.90792 1.57837 1.67782 1.19188 0.93070 0.95737 0.90740 0.88632 0.85658 0.85992 0.88715 0.92075 0.89872 0.94806 0.69894 0.82247 0.81813 0.92927 0.93313 0.91643 0.93376 0.94273 0.93464 0.94485 0.90725 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 9.38 71.98 0.68 -2.46 16 2 C -0.11 -1.21 5.35 30.59 0.16 -1.04 16 3 C 0.13 1.65 0.86 2.99 0.00 1.66 16 4 C -0.11 -0.69 5.34 30.60 0.16 -0.52 16 5 C -0.16 -1.31 9.37 71.98 0.67 -0.63 16 6 N -0.69 -9.49 3.96 -439.81 -1.74 -11.23 16 7 C 0.71 16.34 8.41 179.44 1.51 17.85 16 8 O -0.58 -17.63 17.48 -3.85 -0.07 -17.69 16 9 N -0.57 -13.17 2.09 -777.21 -1.63 -14.79 16 10 C 0.13 2.91 6.29 85.63 0.54 3.45 16 11 C 0.44 14.52 8.03 71.24 0.57 15.10 16 12 O -0.53 -21.06 15.51 21.98 0.34 -20.72 16 13 O -0.34 -12.19 9.06 -51.39 -0.47 -12.66 16 14 C 0.11 4.65 4.25 71.98 0.31 4.95 16 15 C 0.04 1.78 0.58 -52.93 -0.03 1.75 16 16 C -0.14 -5.81 7.58 71.98 0.55 -5.27 16 17 C -0.14 -5.94 7.55 71.98 0.54 -5.40 16 18 C -0.53 -30.02 8.62 25.60 0.22 -29.79 16 19 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 20 C 0.02 1.34 5.32 84.66 0.45 1.79 16 21 N -0.94 -59.09 13.96 21.45 0.30 -58.79 16 22 Si 0.94 43.95 22.79 68.60 1.56 45.51 16 23 H -0.28 -12.58 7.10 99.48 0.71 -11.87 16 24 H -0.31 -14.64 7.11 99.48 0.71 -13.93 16 25 H -0.21 -8.47 4.65 99.48 0.46 -8.01 16 26 C 0.53 11.38 4.79 87.94 0.42 11.80 16 27 O -0.49 -12.79 17.76 -2.90 -0.05 -12.84 16 28 H 0.05 1.06 7.53 -2.38 -0.02 1.04 16 29 H 0.02 0.67 6.58 -2.39 -0.02 0.66 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 34 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.06 0.53 7.43 -2.39 -0.02 0.51 16 36 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 37 H 0.03 0.41 7.42 -2.39 -0.02 0.39 16 38 H 0.45 3.55 8.96 -92.71 -0.83 2.72 16 39 H 0.16 2.99 7.86 -2.39 -0.02 2.98 16 40 H 0.16 2.82 8.00 -2.38 -0.02 2.80 16 41 H 0.05 2.35 8.13 -2.39 -0.02 2.34 16 42 H 0.05 2.23 8.13 -2.39 -0.02 2.21 16 43 H 0.06 2.32 7.94 -2.39 -0.02 2.30 16 44 H 0.05 2.07 4.30 -2.39 -0.01 2.06 16 45 H 0.04 1.64 8.12 -2.39 -0.02 1.63 16 46 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 47 H 0.04 1.55 2.25 -2.39 -0.01 1.54 16 48 H 0.07 2.57 7.68 -2.39 -0.02 2.55 16 49 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -80.55 386.81 4.90 -75.64 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -0.10 Total: 14.36 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 6.75 Total: 13.22 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -3.07 Total: -84.81 kcal Atomic # 8 Polarization: -63.68 SS G_CDS: -0.24 Total: -63.92 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.56 Total: 45.51 kcal Total: -80.55 4.90 -75.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764834096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.826 kcal (2) G-P(sol) polarization free energy of solvation -80.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds