Wall clock time and date at job start Sat Apr 11 2020 06:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47061 * 2 1 4 4 C 1.50702 * 109.47272 * 239.99549 * 2 1 3 5 5 H 1.07989 * 120.00718 * 240.00101 * 4 2 1 6 6 C 1.37879 * 119.99391 * 60.00124 * 4 2 1 7 7 N 1.31516 * 120.00491 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99916 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46772 * 59.99737 * 8 6 4 10 10 H 1.48495 * 109.46915 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46930 * 300.00193 * 8 6 4 12 12 C 1.53006 * 109.47336 * 120.00037 * 2 1 3 13 13 O 1.45203 * 109.46837 * 300.00030 * 12 2 1 14 14 C 1.34226 * 116.99798 * 180.02562 * 13 12 2 15 15 O 1.20824 * 119.99959 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99900 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.46912 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47060 * 179.97438 * 17 16 14 19 19 N 1.46500 * 109.47473 * 180.02562 * 18 17 16 20 20 C 1.33787 * 124.18130 * 269.70212 * 19 18 17 21 21 O 1.21543 * 123.76980 * 0.03590 * 20 19 18 22 22 N 1.34526 * 112.46277 * 179.86018 * 20 19 18 23 23 C 1.47319 * 106.61422 * 0.38417 * 22 20 19 24 24 C 1.53001 * 110.59511 * 241.24913 * 23 22 20 25 25 C 1.52998 * 110.72799 * 118.36939 * 23 22 20 26 26 C 1.34762 * 124.17541 * 89.99857 * 19 18 17 27 27 O 1.21233 * 127.16150 * 359.93270 * 26 19 18 28 28 H 1.09002 * 109.47218 * 299.99498 * 1 2 3 29 29 H 1.08998 * 109.47481 * 60.00485 * 1 2 3 30 30 H 1.09003 * 109.47003 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47115 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47153 * 299.99577 * 3 2 1 33 33 H 1.08998 * 109.47349 * 59.99900 * 3 2 1 34 34 H 0.96995 * 120.00517 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47218 * 179.97438 * 12 2 1 36 36 H 1.09003 * 109.46958 * 60.00094 * 12 2 1 37 37 H 1.09001 * 109.46980 * 59.99650 * 16 14 13 38 38 H 1.08992 * 109.47158 * 299.99756 * 16 14 13 39 39 H 1.09002 * 109.47398 * 300.00078 * 17 16 14 40 40 H 1.09001 * 109.47194 * 60.00258 * 17 16 14 41 41 H 1.09002 * 109.47153 * 300.00319 * 18 17 16 42 42 H 1.08998 * 109.47533 * 59.99948 * 18 17 16 43 43 H 0.96989 * 126.69257 * 180.19426 * 22 20 19 44 44 H 1.08998 * 109.46741 * 174.17357 * 24 23 22 45 45 H 1.08992 * 109.47162 * 294.17434 * 24 23 22 46 46 H 1.09002 * 109.47073 * 54.17423 * 24 23 22 47 47 H 1.09003 * 109.46873 * 305.74194 * 25 23 22 48 48 H 1.08993 * 109.47143 * 65.74553 * 25 23 22 49 49 H 1.09003 * 109.46777 * 185.74951 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 1.8280 -2.5199 -4.0081 10 1 1.8268 -0.4200 -5.2204 11 1 3.8074 -1.1190 -4.0077 12 6 2.0400 -0.7213 1.2493 13 8 1.5560 -0.0368 2.4348 14 6 1.9172 -0.5465 3.6229 15 8 2.6142 -1.5322 3.6706 16 6 1.4522 0.1101 4.8972 17 6 1.9994 -0.6635 6.0985 18 6 1.5280 0.0034 7.3922 19 7 2.0524 -0.7369 8.5425 20 6 1.4155 -1.7524 9.1366 21 8 0.3303 -2.1693 8.7820 22 7 2.1120 -2.2630 10.1680 23 6 3.3553 -1.4789 10.2660 24 6 4.5761 -2.3774 10.0584 25 6 3.4391 -0.7630 11.6156 26 6 3.2335 -0.4753 9.1365 27 8 4.0326 0.3835 8.8308 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 0.7089 1.1613 -3.4844 35 1 3.1300 -0.7217 1.2490 36 1 1.6767 -1.7490 1.2492 37 1 0.3627 0.1086 4.9301 38 1 1.8153 1.1372 4.9301 39 1 1.6361 -1.6906 6.0654 40 1 3.0890 -0.6623 6.0657 41 1 1.8917 1.0304 7.4250 42 1 0.4385 0.0027 7.4253 43 1 1.8461 -3.0014 10.7379 44 1 5.4775 -1.7652 10.0313 45 1 4.6460 -3.0908 10.8795 46 1 4.4746 -2.9165 9.1165 47 1 2.5388 -0.1676 11.7675 48 1 3.5260 -1.5005 12.4133 49 1 4.3123 -0.1106 11.6271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764834673.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:53 Heat of formation + Delta-G solvation = -147.703653 kcal Electronic energy + Delta-G solvation = -29792.449645 eV Core-core repulsion = 25527.249381 eV Total energy + Delta-G solvation = -4265.200264 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.94004 -39.96270 -38.99505 -37.24929 -36.74824 -36.09814 -34.81772 -33.57856 -31.78810 -31.24200 -28.36549 -28.14825 -25.73750 -25.60183 -25.13255 -24.57990 -23.31170 -21.82248 -20.71167 -20.31072 -18.82557 -18.39294 -17.30748 -17.10450 -16.67148 -16.24162 -16.14382 -16.03960 -15.76943 -15.35442 -14.93587 -14.79177 -14.60397 -14.55233 -14.05830 -13.26252 -13.21107 -13.12887 -12.92909 -12.87502 -12.80697 -12.75078 -12.22875 -12.19872 -12.06843 -11.70245 -11.43108 -11.16045 -11.12252 -11.05034 -10.93444 -10.72915 -10.50646 -10.39462 -10.23113 -10.18947 -10.03565 -9.94646 -9.87189 -9.39034 -9.28846 -8.74992 -8.36110 -6.00524 -4.12145 1.21669 1.77851 2.60879 2.63716 2.64374 3.23339 3.30412 3.34730 3.38945 3.43972 3.95344 4.15545 4.39197 4.49464 4.66298 4.73502 4.85754 4.89188 4.91981 5.02708 5.05447 5.09142 5.20291 5.25597 5.32253 5.36814 5.43106 5.47886 5.56952 5.81658 6.01701 6.11849 6.12705 6.33505 6.48925 6.64633 6.76965 6.96994 7.00062 7.10059 7.15748 7.18030 7.42334 7.63906 7.71264 7.73502 8.06736 8.16621 8.27982 8.41143 8.87505 9.53123 11.00600 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027074 B = 0.001846 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.942080 B =15160.843473 C =15276.130538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.069 3.931 3 C -0.129 4.129 4 C -0.512 4.512 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.084 3.916 13 O -0.349 6.349 14 C 0.454 3.546 15 O -0.522 6.522 16 C -0.111 4.111 17 C -0.125 4.125 18 C 0.117 3.883 19 N -0.574 5.574 20 C 0.702 3.298 21 O -0.538 6.538 22 N -0.722 5.722 23 C 0.116 3.884 24 C -0.149 4.149 25 C -0.147 4.147 26 C 0.529 3.471 27 O -0.459 6.459 28 H 0.017 0.983 29 H 0.084 0.916 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.084 0.916 33 H 0.017 0.983 34 H 0.261 0.739 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.439 0.561 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.079 0.921 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.244 -1.704 29.950 30.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.069 3.931 3 C -0.187 4.187 4 C -0.550 4.550 5 H 0.074 0.926 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C 0.011 3.989 13 O -0.264 6.264 14 C 0.297 3.703 15 O -0.412 6.412 16 C -0.150 4.150 17 C -0.163 4.163 18 C -0.003 4.003 19 N -0.320 5.320 20 C 0.403 3.597 21 O -0.410 6.410 22 N -0.387 5.387 23 C 0.026 3.974 24 C -0.207 4.207 25 C -0.205 4.205 26 C 0.315 3.685 27 O -0.328 6.328 28 H 0.036 0.964 29 H 0.103 0.897 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.103 0.897 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.283 0.717 44 H 0.104 0.896 45 H 0.099 0.901 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.098 0.902 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.190 -1.547 29.296 29.510 hybrid contribution 0.320 -1.023 -0.694 1.277 sum 3.509 -2.570 28.602 28.931 Atomic orbital electron populations 1.21766 0.97302 0.98940 1.00672 1.18249 0.93448 0.93088 0.88315 1.21766 0.98056 0.98184 1.00676 1.20897 1.32002 1.12286 0.89835 0.92597 1.24862 0.94824 0.94930 0.98776 1.69816 1.36286 1.22529 1.23395 0.86597 0.79206 0.79752 0.82085 1.20263 1.21207 1.20259 1.23667 0.98150 0.95780 0.81256 1.86516 1.69054 1.55874 1.14977 1.23427 0.77701 0.82601 0.86560 1.90627 1.36107 1.26016 1.88407 1.21189 1.03685 1.01064 0.89020 1.21731 1.02478 1.00668 0.91457 1.21760 1.00926 0.95403 0.82233 1.46392 1.20867 1.33234 1.31553 1.15887 0.83859 0.79706 0.80263 1.91046 1.19170 1.63431 1.67391 1.45696 1.20495 1.37840 1.34715 1.21498 0.87639 0.91740 0.96527 1.22022 0.95348 0.99483 1.03825 1.22006 1.04094 1.01150 0.93223 1.20813 0.80683 0.84038 0.82988 1.90818 1.43563 1.32241 1.66137 0.96430 0.89741 0.95862 0.95866 0.89739 0.96429 0.92850 0.92595 0.92592 0.87397 0.87478 0.90106 0.90399 0.88255 0.87996 0.71665 0.89629 0.90147 0.91110 0.91337 0.90160 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.11 37.16 0.30 -2.84 16 2 C 0.07 1.72 0.58 -155.66 -0.09 1.63 16 3 C -0.13 -3.14 8.11 37.16 0.30 -2.84 16 4 C -0.51 -13.84 8.01 -34.44 -0.28 -14.12 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.83 5.15 -17.82 -0.09 1.73 16 7 N -0.88 -24.11 9.35 55.43 0.52 -23.60 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.08 1.90 4.26 37.16 0.16 2.06 16 13 O -0.35 -6.99 8.88 -39.25 -0.35 -7.34 16 14 C 0.45 7.93 7.96 36.01 0.29 8.22 16 15 O -0.52 -10.55 15.73 -18.75 -0.29 -10.85 16 16 C -0.11 -1.30 5.81 -27.88 -0.16 -1.46 16 17 C -0.12 -1.41 4.83 -26.73 -0.13 -1.54 16 18 C 0.12 1.06 5.70 -4.04 -0.02 1.04 16 19 N -0.57 -5.47 2.60 -120.73 -0.31 -5.78 16 20 C 0.70 6.99 8.62 -88.02 -0.76 6.23 16 21 O -0.54 -7.25 17.48 5.33 0.09 -7.16 16 22 N -0.72 -4.38 5.91 -52.93 -0.31 -4.69 16 23 C 0.12 0.65 1.37 -132.09 -0.18 0.47 16 24 C -0.15 -0.65 8.98 37.16 0.33 -0.31 16 25 C -0.15 -0.50 8.99 37.16 0.33 -0.16 16 26 C 0.53 4.75 6.98 -10.56 -0.07 4.68 16 27 O -0.46 -5.24 17.76 5.60 0.10 -5.14 16 28 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 29 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 33 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 36 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 37 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 40 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 41 H 0.10 0.76 8.00 -51.93 -0.42 0.34 16 42 H 0.10 0.84 7.85 -51.93 -0.41 0.43 16 43 H 0.44 1.60 8.96 -40.82 -0.37 1.23 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 48 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 49 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 404.29 15.07 6.09 6.09 Total: -1.00 -33.58 404.29 -7.63 -41.22 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -8.07 Total: -1.54 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -0.07 Total: 2.78 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: -0.11 Total: -34.07 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.45 Total: -30.48 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.58 -7.63 -41.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764834673.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.487 kcal (2) G-P(sol) polarization free energy of solvation -33.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds