Wall clock time and date at job start Sat Apr 11 2020 06:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47061 * 2 1 4 4 C 1.50702 * 109.47272 * 239.99549 * 2 1 3 5 5 H 1.07989 * 120.00718 * 240.00101 * 4 2 1 6 6 C 1.37879 * 119.99391 * 60.00124 * 4 2 1 7 7 N 1.31516 * 120.00491 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99916 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46772 * 59.99737 * 8 6 4 10 10 H 1.48495 * 109.46915 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46930 * 300.00193 * 8 6 4 12 12 C 1.53006 * 109.47336 * 120.00037 * 2 1 3 13 13 O 1.45203 * 109.46837 * 300.00030 * 12 2 1 14 14 C 1.34226 * 116.99798 * 180.02562 * 13 12 2 15 15 O 1.20824 * 119.99959 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99900 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.46912 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47060 * 179.97438 * 17 16 14 19 19 N 1.46500 * 109.47473 * 180.02562 * 18 17 16 20 20 C 1.33787 * 124.18130 * 269.70212 * 19 18 17 21 21 O 1.21543 * 123.76980 * 0.03590 * 20 19 18 22 22 N 1.34526 * 112.46277 * 179.86018 * 20 19 18 23 23 C 1.47319 * 106.61422 * 0.38417 * 22 20 19 24 24 C 1.53001 * 110.59511 * 241.24913 * 23 22 20 25 25 C 1.52998 * 110.72799 * 118.36939 * 23 22 20 26 26 C 1.34762 * 124.17541 * 89.99857 * 19 18 17 27 27 O 1.21233 * 127.16150 * 359.93270 * 26 19 18 28 28 H 1.09002 * 109.47218 * 299.99498 * 1 2 3 29 29 H 1.08998 * 109.47481 * 60.00485 * 1 2 3 30 30 H 1.09003 * 109.47003 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47115 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47153 * 299.99577 * 3 2 1 33 33 H 1.08998 * 109.47349 * 59.99900 * 3 2 1 34 34 H 0.96995 * 120.00517 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47218 * 179.97438 * 12 2 1 36 36 H 1.09003 * 109.46958 * 60.00094 * 12 2 1 37 37 H 1.09001 * 109.46980 * 59.99650 * 16 14 13 38 38 H 1.08992 * 109.47158 * 299.99756 * 16 14 13 39 39 H 1.09002 * 109.47398 * 300.00078 * 17 16 14 40 40 H 1.09001 * 109.47194 * 60.00258 * 17 16 14 41 41 H 1.09002 * 109.47153 * 300.00319 * 18 17 16 42 42 H 1.08998 * 109.47533 * 59.99948 * 18 17 16 43 43 H 0.96989 * 126.69257 * 180.19426 * 22 20 19 44 44 H 1.08998 * 109.46741 * 174.17357 * 24 23 22 45 45 H 1.08992 * 109.47162 * 294.17434 * 24 23 22 46 46 H 1.09002 * 109.47073 * 54.17423 * 24 23 22 47 47 H 1.09003 * 109.46873 * 305.74194 * 25 23 22 48 48 H 1.08993 * 109.47143 * 65.74553 * 25 23 22 49 49 H 1.09003 * 109.46777 * 185.74951 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 1.8280 -2.5199 -4.0081 10 1 1.8268 -0.4200 -5.2204 11 1 3.8074 -1.1190 -4.0077 12 6 2.0400 -0.7213 1.2493 13 8 1.5560 -0.0368 2.4348 14 6 1.9172 -0.5465 3.6229 15 8 2.6142 -1.5322 3.6706 16 6 1.4522 0.1101 4.8972 17 6 1.9994 -0.6635 6.0985 18 6 1.5280 0.0034 7.3922 19 7 2.0524 -0.7369 8.5425 20 6 1.4155 -1.7524 9.1366 21 8 0.3303 -2.1693 8.7820 22 7 2.1120 -2.2630 10.1680 23 6 3.3553 -1.4789 10.2660 24 6 4.5761 -2.3774 10.0584 25 6 3.4391 -0.7630 11.6156 26 6 3.2335 -0.4753 9.1365 27 8 4.0326 0.3835 8.8308 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 0.7089 1.1613 -3.4844 35 1 3.1300 -0.7217 1.2490 36 1 1.6767 -1.7490 1.2492 37 1 0.3627 0.1086 4.9301 38 1 1.8153 1.1372 4.9301 39 1 1.6361 -1.6906 6.0654 40 1 3.0890 -0.6623 6.0657 41 1 1.8917 1.0304 7.4250 42 1 0.4385 0.0027 7.4253 43 1 1.8461 -3.0014 10.7379 44 1 5.4775 -1.7652 10.0313 45 1 4.6460 -3.0908 10.8795 46 1 4.4746 -2.9165 9.1165 47 1 2.5388 -0.1676 11.7675 48 1 3.5260 -1.5005 12.4133 49 1 4.3123 -0.1106 11.6271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764834673.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:53 Heat of formation + Delta-G solvation = -168.533517 kcal Electronic energy + Delta-G solvation = -29793.352896 eV Core-core repulsion = 25527.249381 eV Total energy + Delta-G solvation = -4266.103515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.61831 -41.47156 -39.77910 -38.49281 -37.80008 -37.04681 -36.58605 -34.46673 -33.26538 -32.32990 -29.36020 -28.45151 -27.57290 -27.49404 -27.00206 -25.36447 -24.31017 -22.49470 -21.65478 -21.37812 -20.72023 -19.13224 -18.66669 -17.89468 -17.73870 -17.66518 -17.47632 -17.18045 -16.77368 -16.67939 -16.23537 -15.93627 -15.45856 -15.32832 -15.01712 -14.65444 -14.60253 -14.49613 -13.76640 -13.67080 -13.60485 -13.42020 -13.27983 -13.17703 -13.13235 -13.08862 -12.84415 -12.80051 -12.66149 -12.57103 -12.32796 -12.14627 -11.96560 -11.91332 -11.72087 -11.63760 -11.27895 -11.22590 -11.17099 -10.97740 -10.74854 -10.52968 -10.40771 -8.05102 -6.23301 0.51356 1.10413 1.23076 1.43656 1.43808 1.51201 1.79526 1.93160 2.10607 2.44881 2.83909 3.17816 3.51484 3.60633 3.76020 3.77299 3.79241 4.13036 4.14732 4.25441 4.27769 4.37148 4.45921 4.54481 4.60103 4.61006 4.63421 4.65682 4.73437 4.79866 4.86172 4.96453 5.04497 5.08618 5.10385 5.18647 5.19815 5.23028 5.37062 5.60214 5.63659 5.68270 5.79039 5.95945 6.07731 6.17399 6.30568 6.36591 6.75824 6.83455 7.05627 7.44323 8.94221 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027074 B = 0.001846 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.942080 B =15160.843473 C =15276.130538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.059 3.941 3 C -0.118 4.118 4 C -0.535 4.535 5 H 0.047 0.953 6 C 0.027 3.973 7 N -0.898 5.898 8 Si 0.952 3.048 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.275 1.275 12 C 0.096 3.904 13 O -0.352 6.352 14 C 0.449 3.551 15 O -0.554 6.554 16 C -0.100 4.100 17 C -0.115 4.115 18 C 0.118 3.882 19 N -0.580 5.580 20 C 0.698 3.302 21 O -0.578 6.578 22 N -0.703 5.703 23 C 0.122 3.878 24 C -0.147 4.147 25 C -0.142 4.142 26 C 0.522 3.478 27 O -0.487 6.487 28 H 0.035 0.965 29 H 0.064 0.936 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.263 0.737 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.451 0.549 44 H 0.087 0.913 45 H 0.109 0.891 46 H 0.053 0.947 47 H 0.064 0.936 48 H 0.107 0.893 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.464 -1.521 32.037 32.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.059 3.941 3 C -0.176 4.176 4 C -0.573 4.573 5 H 0.065 0.935 6 C -0.173 4.173 7 N -0.536 5.536 8 Si 0.778 3.222 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.200 1.200 12 C 0.023 3.977 13 O -0.268 6.268 14 C 0.294 3.706 15 O -0.445 6.445 16 C -0.138 4.138 17 C -0.154 4.154 18 C -0.003 4.003 19 N -0.325 5.325 20 C 0.398 3.602 21 O -0.455 6.455 22 N -0.368 5.368 23 C 0.033 3.967 24 C -0.205 4.205 25 C -0.200 4.200 26 C 0.310 3.690 27 O -0.358 6.358 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.153 0.847 38 H 0.156 0.844 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.135 0.865 42 H 0.130 0.870 43 H 0.299 0.701 44 H 0.106 0.894 45 H 0.128 0.872 46 H 0.072 0.928 47 H 0.083 0.917 48 H 0.126 0.874 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.427 -1.372 31.432 31.648 hybrid contribution 0.282 -1.089 -1.273 1.699 sum 3.709 -2.461 30.159 30.486 Atomic orbital electron populations 1.21617 0.96991 0.98538 1.00450 1.18285 0.93726 0.93369 0.88721 1.21615 0.97682 0.97824 1.00460 1.21162 1.32424 1.12484 0.91258 0.93454 1.25520 0.95010 0.95611 1.01157 1.69924 1.36588 1.23162 1.23928 0.85707 0.78654 0.78721 0.79085 1.20101 1.20552 1.20042 1.23223 0.97396 0.95111 0.81999 1.86509 1.69279 1.55805 1.15206 1.24590 0.76727 0.82231 0.87039 1.90617 1.37643 1.27648 1.88627 1.21353 1.05255 1.01791 0.85396 1.21604 1.01283 0.99752 0.92739 1.21785 1.01614 0.95876 0.81042 1.46494 1.21202 1.33226 1.31577 1.16057 0.83581 0.79708 0.80824 1.91016 1.20990 1.64688 1.68758 1.45657 1.20018 1.37636 1.33493 1.21651 0.87605 0.91089 0.96401 1.22062 0.94575 0.99655 1.04175 1.22040 1.04059 1.01679 0.92223 1.21421 0.79948 0.84136 0.83494 1.90799 1.44211 1.33608 1.67144 0.94650 0.91767 0.96306 0.96241 0.91778 0.94625 0.92783 0.93483 0.93580 0.84667 0.84425 0.92343 0.92090 0.86478 0.86966 0.70128 0.89390 0.87201 0.92774 0.91715 0.87401 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.11 71.98 0.58 -5.16 16 2 C 0.06 2.96 0.58 -52.93 -0.03 2.93 16 3 C -0.12 -5.71 8.11 71.98 0.58 -5.13 16 4 C -0.54 -29.24 8.01 25.60 0.21 -29.03 16 5 H 0.05 2.59 7.74 -2.92 -0.02 2.57 16 6 C 0.03 1.47 5.15 84.66 0.44 1.90 16 7 N -0.90 -49.24 9.35 21.45 0.20 -49.04 16 8 Si 0.95 43.14 29.54 68.60 2.03 45.17 16 9 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 12 C 0.10 4.39 4.26 71.98 0.31 4.69 16 13 O -0.35 -13.84 8.88 -51.38 -0.46 -14.29 16 14 C 0.45 15.39 7.96 71.24 0.57 15.96 16 15 O -0.55 -22.69 15.73 21.97 0.35 -22.34 16 16 C -0.10 -2.15 5.81 29.85 0.17 -1.98 16 17 C -0.12 -2.54 4.83 30.59 0.15 -2.39 16 18 C 0.12 1.98 5.70 86.38 0.49 2.47 16 19 N -0.58 -10.60 2.60 -773.14 -2.01 -12.61 16 20 C 0.70 13.39 8.62 179.44 1.55 14.94 16 21 O -0.58 -15.51 17.48 -3.85 -0.07 -15.57 16 22 N -0.70 -7.38 5.91 -439.80 -2.60 -9.98 16 23 C 0.12 1.14 1.37 2.98 0.00 1.14 16 24 C -0.15 -0.99 8.98 71.98 0.65 -0.34 16 25 C -0.14 -0.58 8.99 71.98 0.65 0.07 16 26 C 0.52 8.90 6.98 87.94 0.61 9.51 16 27 O -0.49 -10.81 17.76 -2.88 -0.05 -10.86 16 28 H 0.03 1.53 7.68 -2.39 -0.02 1.52 16 29 H 0.06 3.38 6.07 -2.39 -0.01 3.36 16 30 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 33 H 0.03 1.54 7.68 -2.39 -0.02 1.52 16 34 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 35 H 0.05 2.19 8.13 -2.39 -0.02 2.17 16 36 H 0.05 2.15 8.13 -2.39 -0.02 2.13 16 37 H 0.14 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.14 2.20 8.14 -2.39 -0.02 2.19 16 39 H 0.06 1.55 8.10 -2.39 -0.02 1.53 16 40 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 41 H 0.12 1.56 8.00 -2.39 -0.02 1.54 16 42 H 0.11 1.68 7.85 -2.39 -0.02 1.66 16 43 H 0.45 2.35 8.96 -92.72 -0.83 1.51 16 44 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 46 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 49 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -73.88 404.29 4.43 -69.45 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.12 Total: 10.48 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 6.92 Total: 9.59 kcal Atomic # 7 Polarization: -67.21 SS G_CDS: -4.41 Total: -71.62 kcal Atomic # 8 Polarization: -62.84 SS G_CDS: -0.23 Total: -63.06 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -73.88 4.43 -69.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764834673.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.081 kcal (2) G-P(sol) polarization free energy of solvation -73.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds