Wall clock time and date at job start Sat Apr 11 2020 06:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47256 * 2 1 4 4 O 1.45195 * 109.47270 * 239.99368 * 2 1 3 5 5 C 1.34544 * 116.99744 * 90.00020 * 4 2 1 6 6 O 1.21250 * 119.99999 * 0.02562 * 5 4 2 7 7 C 1.49433 * 119.99746 * 179.97438 * 5 4 2 8 8 O 1.21346 * 120.00080 * 6.74492 * 7 5 4 9 9 N 1.34778 * 119.99804 * 186.74289 * 7 5 4 10 10 C 1.46922 * 120.63261 * 8.42221 * 9 7 5 11 11 C 1.53620 * 108.54511 * 126.36634 * 10 9 7 12 12 C 1.53045 * 109.24190 * 54.85761 * 11 10 9 13 13 C 1.52992 * 109.44903 * 178.49703 * 12 11 10 14 14 C 1.53043 * 109.53496 * 298.51020 * 12 11 10 15 15 C 1.46928 * 120.62716 * 188.70013 * 9 7 5 16 16 C 1.50699 * 109.46889 * 119.99450 * 2 1 3 17 17 O 1.21280 * 119.99956 * 115.00220 * 16 2 1 18 18 N 1.34776 * 120.00402 * 294.99933 * 16 2 1 19 19 C 1.46511 * 119.99727 * 0.02562 * 18 16 2 20 20 C 1.46494 * 120.00672 * 180.02562 * 18 16 2 21 21 C 1.50697 * 109.47240 * 89.99995 * 20 18 16 22 22 H 1.07997 * 120.00107 * 359.97438 * 21 20 18 23 23 C 1.37878 * 119.99930 * 180.02562 * 21 20 18 24 24 N 1.31513 * 120.00369 * 0.02562 * 23 21 20 25 25 Si 1.86809 * 119.99803 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46960 * 90.00182 * 25 23 21 27 27 H 1.48500 * 109.47054 * 210.00200 * 25 23 21 28 28 H 1.48496 * 109.47009 * 330.00038 * 25 23 21 29 29 H 1.09007 * 109.47173 * 300.00601 * 1 2 3 30 30 H 1.09004 * 109.47666 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47340 * 60.00177 * 1 2 3 32 32 H 1.09002 * 109.58286 * 246.20145 * 10 9 7 33 33 H 1.09000 * 109.58205 * 6.62461 * 10 9 7 34 34 H 1.09001 * 109.63595 * 294.86675 * 11 10 9 35 35 H 1.08998 * 109.43233 * 174.72412 * 11 10 9 36 36 H 1.09001 * 109.45996 * 58.53163 * 12 11 10 37 37 H 1.08996 * 109.47236 * 180.02562 * 13 12 11 38 38 H 1.09005 * 109.47513 * 300.06014 * 13 12 11 39 39 H 1.09004 * 109.47534 * 60.05811 * 13 12 11 40 40 H 1.08994 * 109.49932 * 301.41125 * 14 12 11 41 41 H 1.09003 * 109.49635 * 181.31791 * 14 12 11 42 42 H 1.08999 * 109.59163 * 353.37251 * 15 9 7 43 43 H 1.08995 * 109.58802 * 113.65823 * 15 9 7 44 44 H 1.09000 * 109.46806 * 90.00015 * 19 18 16 45 45 H 1.08997 * 109.46809 * 209.99819 * 19 18 16 46 46 H 1.08999 * 109.46855 * 329.99953 * 19 18 16 47 47 H 1.09000 * 109.47489 * 210.00149 * 20 18 16 48 48 H 1.09007 * 109.46914 * 330.00283 * 20 18 16 49 49 H 0.97001 * 120.00055 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1854 5 6 2.2176 0.0656 -2.2836 6 8 1.9979 1.2576 -2.2528 7 6 2.7156 -0.5702 -3.5409 8 8 2.8199 -1.7772 -3.6104 9 7 3.0489 0.1970 -4.5977 10 6 3.1050 1.6598 -4.4728 11 6 4.4824 2.1389 -4.9558 12 6 4.7281 1.6197 -6.3743 13 6 6.0827 2.1254 -6.8743 14 6 4.7263 0.0893 -6.3667 15 6 3.3571 -0.4133 -5.8982 16 6 2.0322 -0.7103 1.2305 17 8 2.6529 -1.7465 1.1217 18 7 1.7918 -0.1940 2.4521 19 6 1.0416 1.0576 2.5836 20 6 2.2805 -0.8841 3.6483 21 6 3.6619 -0.3857 3.9867 22 1 4.1292 0.3693 3.3719 23 6 4.3295 -0.8944 5.0805 24 7 3.7611 -1.8149 5.8283 25 14 6.0421 -0.2771 5.4996 26 1 5.9382 0.8867 6.4162 27 1 6.8109 -1.3615 6.1616 28 1 6.7385 0.1342 4.2542 29 1 -0.3634 0.5140 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 2.3233 2.1091 -5.0854 33 1 2.9631 1.9431 -3.4299 34 1 5.2568 1.7583 -4.2898 35 1 4.5071 3.2286 -4.9578 36 1 3.9396 1.9806 -7.0347 37 1 6.2579 1.7562 -7.8848 38 1 6.0843 3.2154 -6.8799 39 1 6.8715 1.7643 -6.2143 40 1 5.4984 -0.2720 -5.6875 41 1 4.9246 -0.2797 -7.3730 42 1 3.3815 -1.4983 -5.7962 43 1 2.5942 -0.1317 -6.6240 44 1 -0.0223 0.8362 2.6682 45 1 1.3743 1.5885 3.4755 46 1 1.2148 1.6790 1.7050 47 1 1.6080 -0.6854 4.4827 48 1 2.3176 -1.9570 3.4591 49 1 4.2310 -2.1730 6.5977 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805568561.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:28 Heat of formation + Delta-G solvation = -134.316695 kcal Electronic energy + Delta-G solvation = -30558.075829 eV Core-core repulsion = 26293.456067 eV Total energy + Delta-G solvation = -4264.619762 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.45739 -40.03469 -38.89457 -38.05782 -36.80717 -34.96453 -34.24382 -32.91997 -31.67528 -31.51486 -28.94609 -27.75704 -26.39945 -26.00526 -24.38605 -23.77679 -23.24743 -22.11880 -21.03062 -19.96139 -18.94933 -18.15662 -17.54153 -16.85944 -16.56713 -16.43334 -16.20013 -15.48189 -15.32675 -15.08641 -14.84161 -14.63805 -14.53163 -14.34260 -13.88237 -13.71766 -13.48964 -13.42032 -13.20495 -12.91126 -12.46469 -12.29666 -12.26201 -12.20514 -12.14615 -11.87895 -11.74318 -11.64372 -11.52608 -11.24693 -11.22212 -10.97765 -10.89976 -10.81509 -10.73988 -10.60189 -10.18620 -9.73057 -9.67311 -9.12277 -8.95914 -8.46192 -7.76389 -6.07176 -4.12274 0.92159 1.60138 2.76340 3.03129 3.21107 3.29113 3.36269 3.41068 3.72500 4.19965 4.33755 4.36249 4.40939 4.42610 4.67233 4.72405 4.86939 4.89174 4.94656 4.98500 5.10762 5.23223 5.24616 5.27502 5.36305 5.39480 5.43913 5.50349 5.55552 5.56312 5.60067 5.60745 5.71989 5.79602 5.80798 5.93176 5.99527 6.01783 6.17116 6.24074 6.70779 6.93576 7.14808 7.37002 7.44097 7.61715 7.88497 8.18048 8.24637 8.81560 8.96337 9.52828 11.01005 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013559 B = 0.002602 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.606288 B =10756.699657 C =11738.300772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.065 3.935 3 H 0.110 0.890 4 O -0.292 6.292 5 C 0.462 3.538 6 O -0.482 6.482 7 C 0.534 3.466 8 O -0.484 6.484 9 N -0.582 5.582 10 C 0.067 3.933 11 C -0.132 4.132 12 C -0.095 4.095 13 C -0.147 4.147 14 C -0.130 4.130 15 C 0.111 3.889 16 C 0.507 3.493 17 O -0.513 6.513 18 N -0.595 5.595 19 C 0.076 3.924 20 C 0.247 3.753 21 C -0.530 4.530 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.280 1.280 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.051 0.949 45 H 0.079 0.921 46 H 0.057 0.943 47 H 0.037 0.963 48 H 0.046 0.954 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.501 11.134 -24.429 27.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.007 3.993 3 H 0.127 0.873 4 O -0.204 6.204 5 C 0.301 3.699 6 O -0.371 6.371 7 C 0.316 3.684 8 O -0.356 6.356 9 N -0.319 5.319 10 C -0.054 4.054 11 C -0.170 4.170 12 C -0.114 4.114 13 C -0.205 4.205 14 C -0.168 4.168 15 C -0.011 4.011 16 C 0.291 3.709 17 O -0.388 6.388 18 N -0.329 5.329 19 C -0.068 4.068 20 C 0.128 3.872 21 C -0.568 4.568 22 H 0.076 0.924 23 C -0.140 4.140 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.206 1.206 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.154 0.846 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.076 0.924 47 H 0.055 0.945 48 H 0.064 0.936 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.161 10.104 -24.258 26.605 hybrid contribution 0.926 0.671 0.321 1.187 sum -3.235 10.775 -23.937 26.449 Atomic orbital electron populations 1.22302 0.91840 1.04445 1.04213 1.22870 0.96165 0.97733 0.82535 0.87251 1.86775 1.74736 1.40194 1.18694 1.23565 0.75215 0.85281 0.85824 1.90530 1.47004 1.15828 1.83764 1.18782 0.80044 0.86743 0.82875 1.90839 1.50163 1.13392 1.81227 1.47865 1.66369 1.08150 1.09511 1.22971 0.97311 0.77716 1.07411 1.22109 0.97226 1.01212 0.96429 1.21170 0.98332 0.95091 0.96769 1.21825 0.96622 1.01026 1.00988 1.22001 0.96989 0.95721 1.02111 1.21788 0.96848 0.99973 0.82460 1.19670 0.81425 0.86049 0.83738 1.90745 1.39282 1.23185 1.85592 1.48071 1.54048 1.23978 1.06777 1.21856 0.95403 0.86713 1.02838 1.19369 0.94332 0.93858 0.79624 1.21412 1.01026 1.23092 1.11304 0.92422 1.24934 0.98224 0.94843 0.96043 1.69926 1.38180 1.27885 1.17233 0.86480 0.84028 0.78363 0.78463 1.20599 1.21015 1.19880 0.88917 0.90631 0.91188 0.90881 0.84635 0.91298 0.90301 0.90909 0.92621 0.92532 0.92560 0.91057 0.90279 0.88438 0.90657 0.93056 0.90201 0.92391 0.94515 0.93580 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 9.27 37.16 0.34 -1.81 16 2 C 0.07 1.07 2.17 -27.89 -0.06 1.01 16 3 H 0.11 1.62 6.15 -51.93 -0.32 1.30 16 4 O -0.29 -5.23 9.29 -49.08 -0.46 -5.68 16 5 C 0.46 6.91 7.85 35.40 0.28 7.19 16 6 O -0.48 -6.56 12.43 -19.07 -0.24 -6.80 16 7 C 0.53 7.60 7.73 -11.59 -0.09 7.51 16 8 O -0.48 -8.35 16.40 -7.53 -0.12 -8.47 16 9 N -0.58 -6.18 2.97 -173.02 -0.51 -6.69 16 10 C 0.07 0.59 6.01 -3.49 -0.02 0.56 16 11 C -0.13 -0.96 5.38 -26.39 -0.14 -1.10 16 12 C -0.10 -0.59 2.68 -90.58 -0.24 -0.83 16 13 C -0.15 -0.83 9.19 37.15 0.34 -0.48 16 14 C -0.13 -0.89 5.36 -26.61 -0.14 -1.03 16 15 C 0.11 0.91 6.44 -3.71 -0.02 0.89 16 16 C 0.51 10.94 7.10 -10.99 -0.08 10.86 16 17 O -0.51 -13.69 16.09 -14.05 -0.23 -13.92 16 18 N -0.59 -12.48 2.86 -182.95 -0.52 -13.00 16 19 C 0.08 1.13 8.92 59.85 0.53 1.67 16 20 C 0.25 6.40 5.16 -5.20 -0.03 6.37 16 21 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 22 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 23 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 25 Si 0.90 21.90 29.54 -169.99 -5.02 16.87 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 29 H 0.09 1.00 5.12 -51.93 -0.27 0.74 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.14 1.41 4.30 -54.85 -0.24 1.18 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.10 0.92 7.01 -51.93 -0.36 0.56 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.05 0.63 7.02 -51.93 -0.36 0.27 16 45 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 46 H 0.06 0.71 6.07 -51.93 -0.32 0.40 16 47 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 48 H 0.05 1.35 7.42 -51.93 -0.39 0.97 16 49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 395.36 15.07 5.96 5.96 Total: -1.00 -35.31 395.36 -7.86 -43.17 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -7.71 Total: -2.86 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: 0.25 Total: 17.18 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -0.30 Total: -45.45 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -1.04 Total: -34.87 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.31 -7.86 -43.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805568561.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.143 kcal (2) G-P(sol) polarization free energy of solvation -35.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds