Wall clock time and date at job start Sat Apr 11 2020 06:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47256 * 2 1 4 4 O 1.45195 * 109.47270 * 239.99368 * 2 1 3 5 5 C 1.34544 * 116.99744 * 90.00020 * 4 2 1 6 6 O 1.21250 * 119.99999 * 0.02562 * 5 4 2 7 7 C 1.49433 * 119.99746 * 179.97438 * 5 4 2 8 8 O 1.21346 * 120.00080 * 6.74492 * 7 5 4 9 9 N 1.34778 * 119.99804 * 186.74289 * 7 5 4 10 10 C 1.46922 * 120.63261 * 8.42221 * 9 7 5 11 11 C 1.53620 * 108.54511 * 126.36634 * 10 9 7 12 12 C 1.53045 * 109.24190 * 54.85761 * 11 10 9 13 13 C 1.52992 * 109.44903 * 178.49703 * 12 11 10 14 14 C 1.53043 * 109.53496 * 298.51020 * 12 11 10 15 15 C 1.46928 * 120.62716 * 188.70013 * 9 7 5 16 16 C 1.50699 * 109.46889 * 119.99450 * 2 1 3 17 17 O 1.21280 * 119.99956 * 115.00220 * 16 2 1 18 18 N 1.34776 * 120.00402 * 294.99933 * 16 2 1 19 19 C 1.46511 * 119.99727 * 0.02562 * 18 16 2 20 20 C 1.46494 * 120.00672 * 180.02562 * 18 16 2 21 21 C 1.50697 * 109.47240 * 89.99995 * 20 18 16 22 22 H 1.07997 * 120.00107 * 359.97438 * 21 20 18 23 23 C 1.37878 * 119.99930 * 180.02562 * 21 20 18 24 24 N 1.31513 * 120.00369 * 0.02562 * 23 21 20 25 25 Si 1.86809 * 119.99803 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46960 * 90.00182 * 25 23 21 27 27 H 1.48500 * 109.47054 * 210.00200 * 25 23 21 28 28 H 1.48496 * 109.47009 * 330.00038 * 25 23 21 29 29 H 1.09007 * 109.47173 * 300.00601 * 1 2 3 30 30 H 1.09004 * 109.47666 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47340 * 60.00177 * 1 2 3 32 32 H 1.09002 * 109.58286 * 246.20145 * 10 9 7 33 33 H 1.09000 * 109.58205 * 6.62461 * 10 9 7 34 34 H 1.09001 * 109.63595 * 294.86675 * 11 10 9 35 35 H 1.08998 * 109.43233 * 174.72412 * 11 10 9 36 36 H 1.09001 * 109.45996 * 58.53163 * 12 11 10 37 37 H 1.08996 * 109.47236 * 180.02562 * 13 12 11 38 38 H 1.09005 * 109.47513 * 300.06014 * 13 12 11 39 39 H 1.09004 * 109.47534 * 60.05811 * 13 12 11 40 40 H 1.08994 * 109.49932 * 301.41125 * 14 12 11 41 41 H 1.09003 * 109.49635 * 181.31791 * 14 12 11 42 42 H 1.08999 * 109.59163 * 353.37251 * 15 9 7 43 43 H 1.08995 * 109.58802 * 113.65823 * 15 9 7 44 44 H 1.09000 * 109.46806 * 90.00015 * 19 18 16 45 45 H 1.08997 * 109.46809 * 209.99819 * 19 18 16 46 46 H 1.08999 * 109.46855 * 329.99953 * 19 18 16 47 47 H 1.09000 * 109.47489 * 210.00149 * 20 18 16 48 48 H 1.09007 * 109.46914 * 330.00283 * 20 18 16 49 49 H 0.97001 * 120.00055 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1854 5 6 2.2176 0.0656 -2.2836 6 8 1.9979 1.2576 -2.2528 7 6 2.7156 -0.5702 -3.5409 8 8 2.8199 -1.7772 -3.6104 9 7 3.0489 0.1970 -4.5977 10 6 3.1050 1.6598 -4.4728 11 6 4.4824 2.1389 -4.9558 12 6 4.7281 1.6197 -6.3743 13 6 6.0827 2.1254 -6.8743 14 6 4.7263 0.0893 -6.3667 15 6 3.3571 -0.4133 -5.8982 16 6 2.0322 -0.7103 1.2305 17 8 2.6529 -1.7465 1.1217 18 7 1.7918 -0.1940 2.4521 19 6 1.0416 1.0576 2.5836 20 6 2.2805 -0.8841 3.6483 21 6 3.6619 -0.3857 3.9867 22 1 4.1292 0.3693 3.3719 23 6 4.3295 -0.8944 5.0805 24 7 3.7611 -1.8149 5.8283 25 14 6.0421 -0.2771 5.4996 26 1 5.9382 0.8867 6.4162 27 1 6.8109 -1.3615 6.1616 28 1 6.7385 0.1342 4.2542 29 1 -0.3634 0.5140 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 2.3233 2.1091 -5.0854 33 1 2.9631 1.9431 -3.4299 34 1 5.2568 1.7583 -4.2898 35 1 4.5071 3.2286 -4.9578 36 1 3.9396 1.9806 -7.0347 37 1 6.2579 1.7562 -7.8848 38 1 6.0843 3.2154 -6.8799 39 1 6.8715 1.7643 -6.2143 40 1 5.4984 -0.2720 -5.6875 41 1 4.9246 -0.2797 -7.3730 42 1 3.3815 -1.4983 -5.7962 43 1 2.5942 -0.1317 -6.6240 44 1 -0.0223 0.8362 2.6682 45 1 1.3743 1.5885 3.4755 46 1 1.2148 1.6790 1.7050 47 1 1.6080 -0.6854 4.4827 48 1 2.3176 -1.9570 3.4591 49 1 4.2310 -2.1730 6.5977 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805568561.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:27 Heat of formation + Delta-G solvation = -156.667981 kcal Electronic energy + Delta-G solvation = -30559.045053 eV Core-core repulsion = 26293.456067 eV Total energy + Delta-G solvation = -4265.588987 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.58274 -41.24926 -40.31328 -38.97158 -38.01397 -36.75245 -35.03426 -34.90890 -33.10512 -32.18539 -29.73836 -29.55699 -27.72750 -27.12697 -25.91429 -24.51772 -24.43149 -23.38154 -21.94547 -20.77657 -20.47185 -19.28548 -18.71367 -18.66887 -18.00856 -17.64533 -17.63391 -17.06483 -16.54316 -16.31835 -15.90609 -15.83356 -15.46545 -15.17735 -14.97004 -14.87319 -14.50616 -14.46280 -14.37250 -14.17194 -13.90461 -13.69063 -13.55278 -13.36177 -13.11538 -12.87371 -12.84219 -12.76323 -12.71617 -12.65386 -12.53455 -12.26399 -12.24114 -12.09253 -11.88141 -11.74121 -11.56849 -11.36059 -10.76349 -10.66107 -10.59204 -9.96771 -9.54737 -8.25316 -6.39935 -0.21274 0.50466 1.34903 1.38633 1.47976 1.56452 1.66025 1.91174 2.33781 2.43616 3.02110 3.04847 3.33442 3.61927 3.74282 3.76509 3.80931 3.84147 4.03687 4.27304 4.29376 4.33102 4.43819 4.52548 4.57563 4.64368 4.70186 4.71673 4.73114 4.86951 4.87393 4.89583 4.94253 5.03528 5.05284 5.08397 5.11170 5.15439 5.20112 5.34846 5.35571 5.49068 5.51100 5.75206 5.78838 6.01461 6.06768 6.53773 6.58182 6.68667 7.17508 7.33571 8.82136 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013559 B = 0.002602 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.606288 B =10756.699657 C =11738.300772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.075 3.925 3 H 0.132 0.868 4 O -0.324 6.324 5 C 0.461 3.539 6 O -0.467 6.467 7 C 0.528 3.472 8 O -0.528 6.528 9 N -0.568 5.568 10 C 0.064 3.936 11 C -0.129 4.129 12 C -0.091 4.091 13 C -0.146 4.146 14 C -0.126 4.126 15 C 0.104 3.896 16 C 0.497 3.503 17 O -0.581 6.581 18 N -0.597 5.597 19 C 0.066 3.934 20 C 0.259 3.741 21 C -0.546 4.546 22 H 0.053 0.947 23 C 0.009 3.991 24 N -0.926 5.926 25 Si 0.968 3.032 26 H -0.259 1.259 27 H -0.281 1.281 28 H -0.275 1.275 29 H 0.116 0.884 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.049 0.951 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.050 0.950 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.036 0.964 48 H -0.002 1.002 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.941 14.525 -26.443 30.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 H 0.149 0.851 4 O -0.238 6.238 5 C 0.300 3.700 6 O -0.355 6.355 7 C 0.310 3.690 8 O -0.405 6.405 9 N -0.303 5.303 10 C -0.056 4.056 11 C -0.167 4.167 12 C -0.109 4.109 13 C -0.203 4.203 14 C -0.164 4.164 15 C -0.016 4.016 16 C 0.283 3.717 17 O -0.461 6.461 18 N -0.329 5.329 19 C -0.075 4.075 20 C 0.139 3.861 21 C -0.585 4.585 22 H 0.071 0.929 23 C -0.191 4.191 24 N -0.566 5.566 25 Si 0.792 3.208 26 H -0.184 1.184 27 H -0.207 1.207 28 H -0.200 1.200 29 H 0.134 0.866 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.138 0.862 34 H 0.068 0.932 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.123 0.877 44 H 0.104 0.896 45 H 0.095 0.905 46 H 0.110 0.890 47 H 0.054 0.946 48 H 0.016 0.984 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.636 13.604 -26.299 29.970 hybrid contribution 1.049 -0.326 0.880 1.408 sum -3.587 13.278 -25.420 28.902 Atomic orbital electron populations 1.22342 0.88521 1.04569 1.06569 1.22839 0.98380 0.97101 0.79942 0.85105 1.86764 1.75573 1.41746 1.19705 1.23708 0.75422 0.85395 0.85441 1.90539 1.46284 1.14962 1.83703 1.18859 0.80344 0.86499 0.83304 1.90818 1.52764 1.15033 1.81889 1.48106 1.63982 1.08961 1.09235 1.23100 0.99130 0.76340 1.07046 1.22112 0.95540 1.02283 0.96815 1.21174 0.99322 0.94225 0.96226 1.21804 0.95810 1.01488 1.01186 1.22000 0.95253 0.96480 1.02692 1.22061 0.98710 0.99170 0.81650 1.20641 0.80264 0.85470 0.85294 1.90702 1.42348 1.26284 1.86750 1.48047 1.53989 1.25485 1.05387 1.22250 0.96510 0.84345 1.04394 1.18857 0.93992 0.91734 0.81551 1.21686 1.02196 1.23164 1.11451 0.92877 1.25851 1.02402 0.94910 0.95906 1.70041 1.39930 1.28888 1.17726 0.85417 0.78708 0.78399 0.78292 1.18421 1.20662 1.20038 0.86619 0.91731 0.88585 0.88280 0.86236 0.93239 0.88437 0.89035 0.91678 0.91785 0.93745 0.93133 0.88085 0.90099 0.87683 0.89589 0.90525 0.88964 0.94607 0.98367 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 9.27 71.98 0.67 -3.06 16 2 C 0.08 2.41 2.17 29.85 0.06 2.47 16 3 H 0.13 3.57 6.15 -2.39 -0.01 3.55 16 4 O -0.32 -11.83 9.29 -45.91 -0.43 -12.26 16 5 C 0.46 13.69 7.85 70.84 0.56 14.25 16 6 O -0.47 -11.88 12.43 20.64 0.26 -11.62 16 7 C 0.53 15.23 7.73 87.26 0.67 15.91 16 8 O -0.53 -19.15 16.40 9.23 0.15 -19.00 16 9 N -0.57 -11.45 2.97 -819.68 -2.43 -13.88 16 10 C 0.06 0.97 6.01 86.51 0.52 1.49 16 11 C -0.13 -1.60 5.38 30.82 0.17 -1.44 16 12 C -0.09 -0.87 2.68 -10.77 -0.03 -0.90 16 13 C -0.15 -1.27 9.19 71.98 0.66 -0.61 16 14 C -0.13 -1.49 5.36 30.67 0.16 -1.33 16 15 C 0.10 1.57 6.44 86.36 0.56 2.12 16 16 C 0.50 21.99 7.10 87.66 0.62 22.62 16 17 O -0.58 -32.99 16.09 15.72 0.25 -32.73 16 18 N -0.60 -25.29 2.86 -851.12 -2.43 -27.72 16 19 C 0.07 1.83 8.92 127.77 1.14 2.97 16 20 C 0.26 14.03 5.16 85.63 0.44 14.47 16 21 C -0.55 -31.73 9.39 25.60 0.24 -31.49 16 22 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 23 C 0.01 0.50 5.46 84.66 0.46 0.96 16 24 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 25 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 26 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 27 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 28 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 29 H 0.12 2.07 5.12 -2.38 -0.01 2.06 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.12 2.26 4.30 -48.66 -0.21 2.05 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 39 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.10 0.78 8.14 -2.39 -0.02 0.77 16 42 H 0.08 1.53 7.01 -2.39 -0.02 1.52 16 43 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.09 1.82 7.02 -2.39 -0.02 1.80 16 45 H 0.08 2.20 8.07 -2.39 -0.02 2.18 16 46 H 0.09 1.93 6.07 -2.39 -0.01 1.92 16 47 H 0.04 1.91 8.07 -2.39 -0.02 1.89 16 48 H 0.00 -0.11 7.42 -2.38 -0.02 -0.13 16 49 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -82.81 395.36 5.35 -77.46 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.75 Total: 10.00 kcal Atomic # 6 Polarization: 31.53 SS G_CDS: 6.91 Total: 38.44 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -4.58 Total: -97.59 kcal Atomic # 8 Polarization: -75.85 SS G_CDS: 0.23 Total: -75.62 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -82.81 5.35 -77.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805568561.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.208 kcal (2) G-P(sol) polarization free energy of solvation -82.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds