Wall clock time and date at job start Sat Apr 11 2020 06:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.53555 * 2 1 4 4 N 1.47319 * 110.59511 * 237.00840 * 2 1 3 5 5 C 1.34526 * 106.61422 * 241.24913 * 4 2 1 6 6 O 1.21543 * 123.76717 * 180.20845 * 5 4 2 7 7 N 1.33787 * 112.46277 * 0.38417 * 5 4 2 8 8 C 1.46500 * 124.18130 * 179.86018 * 7 5 4 9 9 C 1.52997 * 109.47473 * 269.70212 * 8 7 5 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 7 11 11 O 1.45198 * 109.46884 * 180.02562 * 10 9 8 12 12 C 1.34231 * 116.99983 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00142 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99870 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.47065 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47458 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47458 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47065 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00127 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99841 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00192 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99877 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.46846 * 90.00637 * 22 20 18 24 24 H 1.48503 * 109.47024 * 210.00244 * 22 20 18 25 25 H 1.48497 * 109.47104 * 330.00190 * 22 20 18 26 26 C 1.34762 * 111.64272 * 359.59632 * 7 5 4 27 27 O 1.21233 * 127.16150 * 180.19654 * 26 7 5 28 28 H 1.08998 * 109.46741 * 297.16517 * 1 2 3 29 29 H 1.08992 * 109.47162 * 57.16594 * 1 2 3 30 30 H 1.09002 * 109.47073 * 177.16583 * 1 2 3 31 31 H 1.09003 * 109.46873 * 182.82764 * 3 2 1 32 32 H 1.08993 * 109.47143 * 302.83123 * 3 2 1 33 33 H 1.09003 * 109.46777 * 62.83521 * 3 2 1 34 34 H 0.96989 * 126.69291 * 61.43905 * 4 2 1 35 35 H 1.09002 * 109.47129 * 149.69955 * 8 7 5 36 36 H 1.08998 * 109.46845 * 29.70762 * 8 7 5 37 37 H 1.09002 * 109.47153 * 59.99757 * 9 8 7 38 38 H 1.09001 * 109.46832 * 299.99948 * 9 8 7 39 39 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 40 40 H 1.08992 * 109.47399 * 59.99823 * 10 9 8 41 41 H 1.09005 * 109.47107 * 299.99311 * 14 12 11 42 42 H 1.08998 * 109.47871 * 59.99674 * 14 12 11 43 43 H 1.09001 * 109.47487 * 299.99879 * 15 14 12 44 44 H 1.08998 * 109.47295 * 59.99586 * 15 14 12 45 45 H 1.09001 * 109.47474 * 300.00328 * 16 15 14 46 46 H 1.09008 * 109.46853 * 59.99733 * 16 15 14 47 47 H 1.09005 * 109.46784 * 300.00147 * 17 16 15 48 48 H 1.08998 * 109.47295 * 59.99994 * 17 16 15 49 49 H 0.96995 * 119.99857 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 7 2.0482 -0.7509 -1.1567 5 6 2.7640 -1.7761 -0.6603 6 8 3.3369 -2.5966 -1.3502 7 7 2.7715 -1.7940 0.6774 8 6 3.4687 -2.7994 1.4832 9 6 2.5253 -3.9703 1.7658 10 6 3.2533 -5.0200 2.6079 11 8 2.3581 -6.1314 2.8755 12 6 2.8465 -7.1443 3.6085 13 8 3.9844 -7.1038 4.0127 14 6 1.9758 -8.3326 3.9263 15 6 2.7685 -9.3353 4.7673 16 6 1.8845 -10.5414 5.0905 17 6 2.6774 -11.5444 5.9310 18 6 1.8067 -12.7326 6.2488 19 1 0.7895 -12.7687 5.8879 20 6 2.3085 -13.7733 7.0013 21 7 1.5486 -14.8101 7.2791 22 14 4.0678 -13.7106 7.6262 23 1 4.0961 -13.0600 8.9607 24 1 4.6032 -15.0913 7.7372 25 1 4.9026 -12.9307 6.6774 26 6 2.0634 -0.7694 1.1921 27 8 1.8886 -0.5161 2.3648 28 1 -0.3633 0.4692 0.9143 29 1 -0.3633 0.5572 -0.8634 30 1 -0.3633 -1.0264 -0.0508 31 1 3.1554 1.4129 -0.0507 32 1 1.6724 1.9684 -0.8635 33 1 1.7548 1.9375 0.9144 34 1 1.9040 -0.5446 -2.0933 35 1 3.7865 -2.3532 2.4256 36 1 4.3419 -3.1594 0.9391 37 1 2.2075 -4.4165 0.8234 38 1 1.6522 -3.6102 2.3099 39 1 4.1266 -5.3802 2.0641 40 1 3.5706 -4.5736 3.5501 41 1 1.0997 -8.0022 4.4845 42 1 1.6575 -8.8084 2.9988 43 1 3.6444 -9.6657 4.2089 44 1 3.0871 -8.8598 5.6949 45 1 1.0088 -10.2108 5.6491 46 1 1.5655 -11.0171 4.1630 47 1 3.5528 -11.8749 5.3719 48 1 2.9967 -11.0690 6.8584 49 1 1.9018 -15.5424 7.8082 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805698501.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:41 Heat of formation + Delta-G solvation = -157.106129 kcal Electronic energy + Delta-G solvation = -28438.868005 eV Core-core repulsion = 24173.260019 eV Total energy + Delta-G solvation = -4265.607986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.14824 -40.51352 -39.20251 -37.50347 -36.99391 -36.20218 -35.10092 -33.31494 -32.61284 -31.83616 -30.32285 -28.30552 -27.58314 -26.03999 -24.73938 -23.23727 -22.30902 -21.94044 -20.96629 -20.41757 -20.07763 -18.58558 -17.63437 -17.38526 -17.05523 -16.79743 -16.58358 -16.39746 -16.30586 -15.79207 -15.43794 -15.11291 -14.76065 -14.49492 -14.29225 -14.19332 -13.44654 -13.42293 -13.32283 -13.24418 -13.02973 -13.01143 -12.66528 -12.45102 -12.36633 -12.23976 -11.96526 -11.75137 -11.67246 -11.32617 -11.15735 -10.79340 -10.75452 -10.70651 -10.58653 -10.57249 -10.36254 -10.14225 -9.87155 -9.67596 -9.53058 -9.13449 -8.49688 -6.00705 -3.98425 1.01365 1.53375 2.22980 2.35097 2.44253 2.62883 3.23460 3.35025 3.42190 3.47621 3.78050 3.98680 4.21374 4.35247 4.42070 4.49694 4.60138 4.73459 4.76047 4.77739 4.80488 4.87089 4.90110 5.00407 5.07230 5.10633 5.20298 5.20956 5.22669 5.31459 5.34041 5.47633 5.56424 5.69486 5.95692 6.05772 6.15084 6.31277 6.36865 6.42994 6.61943 6.75952 6.76245 6.95863 7.35826 7.48567 7.53221 7.74953 7.84157 8.57813 9.04298 9.62446 11.12770 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.031234 B = 0.001395 C = 0.001387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.242396 B =20071.493211 C =20177.039859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.117 3.883 3 C -0.148 4.148 4 N -0.721 5.721 5 C 0.702 3.298 6 O -0.537 6.537 7 N -0.575 5.575 8 C 0.121 3.879 9 C -0.137 4.137 10 C 0.071 3.929 11 O -0.360 6.360 12 C 0.461 3.539 13 O -0.506 6.506 14 C -0.112 4.112 15 C -0.111 4.111 16 C -0.102 4.102 17 C -0.015 4.015 18 C -0.521 4.521 19 H 0.071 0.929 20 C 0.065 3.935 21 N -0.905 5.905 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.265 1.265 26 C 0.529 3.471 27 O -0.458 6.458 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.440 0.560 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.016 0.984 48 H 0.012 0.988 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.917 38.409 -19.198 42.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.027 3.973 3 C -0.206 4.206 4 N -0.386 5.386 5 C 0.403 3.597 6 O -0.410 6.410 7 N -0.321 5.321 8 C 0.000 4.000 9 C -0.175 4.175 10 C -0.004 4.004 11 O -0.277 6.277 12 C 0.305 3.695 13 O -0.393 6.393 14 C -0.149 4.149 15 C -0.149 4.149 16 C -0.140 4.140 17 C -0.053 4.053 18 C -0.559 4.559 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.544 5.544 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.189 1.189 26 C 0.315 3.685 27 O -0.326 6.326 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.285 0.715 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.034 0.966 48 H 0.030 0.970 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.290 37.905 -18.638 42.240 hybrid contribution 0.941 0.038 -0.030 0.942 sum 0.651 37.943 -18.668 42.292 Atomic orbital electron populations 1.22025 0.89862 1.04097 1.04667 1.21506 0.97441 0.94275 0.84116 1.22018 1.02119 0.91763 1.04678 1.45706 1.54717 1.29012 1.09172 1.15881 0.79887 0.82333 0.81631 1.91056 1.47974 1.41182 1.60769 1.46360 1.49629 1.28212 1.07934 1.21543 0.95129 0.87288 0.96063 1.21860 0.99559 0.94423 1.01653 1.22760 0.92246 0.85330 1.00068 1.86503 1.45516 1.29185 1.66543 1.24196 0.87610 0.83402 0.74314 1.90668 1.19875 1.79052 1.49722 1.21590 0.98868 0.91060 1.03414 1.21608 0.98763 0.95273 0.99255 1.21478 0.98063 0.94121 1.00346 1.19578 0.96203 0.94656 0.94832 1.21177 1.00148 1.01580 1.32952 0.91042 1.25037 0.97540 0.95255 0.95706 1.69918 1.36487 1.08503 1.39538 0.86776 0.85690 0.77158 0.79675 1.20323 1.21432 1.18940 1.20852 0.77249 0.80373 0.90037 1.90828 1.56228 1.68997 1.16555 0.89569 0.90036 0.91158 0.91307 0.90042 0.89574 0.71536 0.88090 0.87831 0.89758 0.90057 0.90710 0.90786 0.87684 0.87674 0.91514 0.91533 0.92578 0.92551 0.96569 0.97011 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.32 8.98 37.16 0.33 0.01 16 2 C 0.12 0.41 1.37 -132.09 -0.18 0.23 16 3 C -0.15 -0.27 8.99 37.16 0.33 0.07 16 4 N -0.72 -2.88 5.91 -52.93 -0.31 -3.20 16 5 C 0.70 5.41 8.62 -88.02 -0.76 4.65 16 6 O -0.54 -6.08 17.48 5.33 0.09 -5.99 16 7 N -0.58 -4.11 2.60 -120.73 -0.31 -4.42 16 8 C 0.12 0.82 5.70 -4.04 -0.02 0.80 16 9 C -0.14 -1.06 5.92 -26.73 -0.16 -1.22 16 10 C 0.07 0.68 5.47 37.16 0.20 0.88 16 11 O -0.36 -4.35 10.22 -39.26 -0.40 -4.75 16 12 C 0.46 6.39 7.96 36.01 0.29 6.68 16 13 O -0.51 -8.44 15.73 -18.75 -0.29 -8.73 16 14 C -0.11 -1.44 5.81 -27.88 -0.16 -1.60 16 15 C -0.11 -1.82 4.50 -26.73 -0.12 -1.94 16 16 C -0.10 -1.99 5.15 -26.73 -0.14 -2.12 16 17 C -0.02 -0.37 4.04 -27.88 -0.11 -0.49 16 18 C -0.52 -15.10 9.66 -34.44 -0.33 -15.44 16 19 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 20 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 21 N -0.91 -28.35 13.96 55.43 0.77 -27.58 16 22 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 26 C 0.53 3.56 6.98 -10.56 -0.07 3.49 16 27 O -0.46 -4.23 17.76 5.60 0.10 -4.13 16 28 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 33 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.44 0.77 8.96 -40.82 -0.37 0.40 16 35 H 0.10 0.59 8.00 -51.93 -0.42 0.17 16 36 H 0.10 0.67 7.85 -51.93 -0.41 0.26 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 40 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 41 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 44 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 47 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 48 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 49 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 412.57 15.07 6.22 6.22 Total: -1.00 -37.07 412.57 -8.11 -45.19 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -8.30 Total: -6.08 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -1.00 Total: -4.16 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.15 Total: -35.20 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.50 Total: -23.60 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -37.07 -8.11 -45.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805698501.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.920 kcal (2) G-P(sol) polarization free energy of solvation -37.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds